Multi-level Mathematical Models for Cell Migration in Confined Environments

2021 ◽  
pp. 124-140
Author(s):  
Luigi Preziosi ◽  
Marco Scianna
2014 ◽  
Vol 11 (2) ◽  
pp. 1075-1109
Author(s):  
Andreas Deutsch ◽  
Thomas Hillen ◽  
Christina Surulescu ◽  
Michael Winkler

2017 ◽  
Author(s):  
Loic Fort ◽  
Jose Batista ◽  
Peter Thomason ◽  
Heather J. Spence ◽  
Jennifer Greaves ◽  
...  

AbstractActin-based protrusions driving cell migration are reinforced through positive feedback, but it is unclear how the cell restricts the eventual size of a protrusion or limits positive signals to cause splitting or retraction. We have identified an evolutionarily conserved regulator of the protrusion machinery, which we name CYRI (CYFIP-related Rac interacting) protein. CYRI shows sequence similarity to the Scar/WAVE complex member CYFIP in a Domain of Unknown Function, DUF1394. CYRI binds specifically to activated Rac1 via a common motif shared with CYFIP, establishing DUF1394 as a new Rac1 binding domain. CYRI-depleted cells have broad, Scar/WAVE-enriched lamellipodia and enhanced Rac1 signaling. Conversely, CYRI overexpression suppresses spreading and dramatically sharpens protrusions into unproductive needles. CYRI proteins use dynamic inhibition of Scar/WAVE induced actin to focus positive protrusion signals and regulate pseudopod complexity. CYRI behaves like a “local inhibitor” predicted and described in widely accepted mathematical models, but not previously identified in living cells.


2020 ◽  
Vol 177 ◽  
pp. 03022
Author(s):  
Dmitry Dubinkin ◽  
Vladimir Sadovets ◽  
Ilya Syrkin ◽  
Ivan Chicherin

The paper substantiates the need to create an autonomous dump truck control system. The scope of the unmanned mining dump truck is described. An example of the layout of the general scheme of an autonomous dump truck with control system basic elements is given, as well as some differences from the dump trucks with traditional control system are presented. The levels of automation of autonomous dump truck are formed. The enlarged tasks that need to be addressed when creating a control system for autonomous mining dump truck are highlighted. The general structure of a multi-level control system for autonomous dump truck was developed. The upper, middle and lower levels of the control system are described. The summation is drawn on the relevance of developing scientifically based approaches for creating control systems for autonomous mining truck, as well as developing mathematical models and algorithms for controlling autonomous mining trucks. The main directions for further research are identified. They are the development of requirements for a dump truck control system; the development of the structure of mathematical models and algorithms for the operation of subsystems of the dump truck control; the development of software that allows simulating the interaction of the subsystems of the dump truck control system with each other, the Smart Quarry system and the operator.


Open Biology ◽  
2016 ◽  
Vol 6 (6) ◽  
pp. 160056 ◽  
Author(s):  
Linus J. Schumacher ◽  
Paul M. Kulesa ◽  
Rebecca McLennan ◽  
Ruth E. Baker ◽  
Philip K. Maini

Mathematical models are becoming increasingly integrated with experimental efforts in the study of biological systems. Collective cell migration in developmental biology is a particularly fruitful application area for the development of theoretical models to predict the behaviour of complex multicellular systems with many interacting parts. In this context, mathematical models provide a tool to assess the consistency of experimental observations with testable mechanistic hypotheses. In this review, we showcase examples from recent years of multidisciplinary investigations of neural crest cell migration. The neural crest model system has been used to study how collective migration of cell populations is shaped by cell–cell interactions, cell–environmental interactions and heterogeneity between cells. The wide range of emergent behaviours exhibited by neural crest cells in different embryonal locations and in different organisms helps us chart out the spectrum of collective cell migration. At the same time, this diversity in migratory characteristics highlights the need to reconcile or unify the array of currently hypothesized mechanisms through the next generation of experimental data and generalized theoretical descriptions.


2020 ◽  
Vol 209 ◽  
pp. 02014
Author(s):  
Nikolay Ilkevich ◽  
Tatyana Dzyubina ◽  
Zhanna Kalinina

The article shows the relevance of hierarchical modeling in substantiating the optimal development of the gas industry in modern conditions. The questions of aggregation of calculation schemes of gas supply systems are considered. A set of mathematical models is proposed that allows us to consider it at three levels of the hierarchy, taking into account the improvement, refinement and detail of the information base being developed. Models are considered: 1) optimization of the structure of gas supply systems; 2) optimization of se-zone gas consumption, analysis and synthesis of reliability; 3) optimization of parameters of the main gas-wire taking into account reliability. The created information base on gas supply systems of the Russian Federation includes dynamics of development of demand for natural gas in the domestic and foreign markets, aggregated technical and technological, cost and reliability characteristics of system objects (main gas lines, fields, underground gas storage facilities) and forecasts of gas production. On the basis of mathematical models, studies of the development of multi-level gas supply systems in Russia for the period up to 2030 are performed: the rates and directions of development of the gas transport structure, commissioning of new fields and optimal gas flows through the Russian Federation are substantiated. A systematic assessment of the means of regulating seasonal unevenness of gas consumption and the means of ensuring the reliability of the North-Western district of the Russian Federation was carried out.


2017 ◽  
Author(s):  
Sean T. Vittadello ◽  
Scott W. McCue ◽  
Gency Gunasingh ◽  
Nikolas K. Haass ◽  
Matthew J. Simpson

AbstractFluorescent ubiquitination-based cell cycle indicator, also known as FUCCI, allows the visualisation of the G1 and S/G2/M cell cycle phases of individual cells. FUCCI consists of two fluorescent probes, so that cells in the G1 phase fluoresce red and cells in the S/G2/M phase fluoresce green. FUCCI reveals real-time information about cell cycle dynamics of individual cells, and can be used to explore how the cell cycle relates to the location of individual cells, local cell density, and different cellular microenvironments. In particular, FUCCI is used in experimental studies examining cell migration, such as malignant invasion and wound healing. Here we present new mathematical models which can describe cell migration and cell cycle dynamics as indicated by FUCCI. The fundamental model describes the two cell cycle phases, G1 and S/G2/M, which FUCCI directly labels. The extended model includes a third phase, early S, which FUCCI indirectly labels. We present experimental data from scratch assays using FUCCI-transduced melanoma cells, and show that the predictions of spatial and temporal patterns of cell density in the experiments can be described by the fundamental model. We obtain numerical solutions of both the fundamental and extended models, which can take the form of travelling waves. These solutions are mathematically interesting because they are a combination of moving wavefronts and moving pulses. We derive and confirm a simple analytical expression for the minimum wave speed, as well as exploring how the wave speed depends on the spatial decay rate of the initial condition.


2021 ◽  
Vol 285 ◽  
pp. 07019
Author(s):  
Maksim Litvinov

In this paper, we consider the study of the process of seed movement in the seed duct and the impact on the operation of a multi-level seeding system. Mathematical models of the movement of the seed material from the seeder to the plowshare group along the seed line are obtained. To a greater extent, the movement time is affected by the weight of the sown portion and the initial speed of the seeds when falling from the seeder. Also, in straight sections, the time depends on the geometric parameters of the seed line. In the future, the formula of the complete transfer of seeds from the seeder to the plowshare group will allow you to adjust the mode of adjusting the response time of the dosing system on a self-propelled seeder with a multi-level seeding system.


Author(s):  
Сергей Светуньков ◽  
Sergey Svetun'kov

A modern competition theory deals with a single-level B2C market involving product vendors (i.e., its manufacturers) and innumerable quantity of ultimate buyers. Also, several researchers study B2B competition. However, nobody has taken a shot at study of systemic interrelationship of various market levels as yet. This the first paper in this regard. It represents successive description of approaches, methods and models of various market levels and relevant competition. A cri­tical constructive analysis of modern tool base of the competition theory is performed. The paper demonstrates several ways of its advance and development by modification of existing models and coefficients, as well as application of new ones.


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