QTL mapping of yield, agronomic and quality traits in tetraploid potato (Solanum tuberosum subsp. tuberosum)

2007 ◽  
Vol 116 (2) ◽  
pp. 193-211 ◽  
Author(s):  
John E. Bradshaw ◽  
Christine A. Hackett ◽  
Barnaly Pande ◽  
Robbie Waugh ◽  
Glenn J. Bryan
Heredity ◽  
2021 ◽  
Author(s):  
Guilherme da Silva Pereira ◽  
Marcelo Mollinari ◽  
Mitchell J. Schumann ◽  
Mark E. Clough ◽  
Zhao-Bang Zeng ◽  
...  

AbstractThere are many challenges involved with the genetic analyses of autopolyploid species, such as the tetraploid potato, Solanum tuberosum (2n = 4x = 48). The development of new analytical methods has made it valuable to re-analyze an F1 population (n = 156) derived from a cross involving ‘Atlantic’, a widely grown chipping variety in the USA. A fully integrated genetic map with 4285 single nucleotide polymorphisms, spanning 1630 cM, was constructed with MAPpoly software. We observed that bivalent configurations were the most abundant ones (51.0~72.4% depending on parent and linkage group), though multivalent configurations were also observed (2.2~39.2%). Seven traits were evaluated over four years (2006–8 and 2014) and quantitative trait loci (QTL) mapping was carried out using QTLpoly software. Based on a multiple-QTL model approach, we detected 21 QTL for 15 out of 27 trait-year combination phenotypes. A hotspot on linkage group 5 was identified with co-located QTL for maturity, plant yield, specific gravity, and internal heat necrosis resistance evaluated over different years. Additional QTL for specific gravity and dry matter were detected with maturity-corrected phenotypes. Among the genes around QTL peaks, we found those on chromosome 5 that have been previously implicated in maturity (StCDF1) and tuber formation (POTH1). These analyses have the potential to provide insights into the biology and breeding of tetraploid potato and other autopolyploid species.


Author(s):  
Guilherme da Silva Pereira ◽  
Marcelo Mollinari ◽  
Mitchell J. Schumann ◽  
Mark E. Clough ◽  
Zhao-Bang Zeng ◽  
...  

AbstractThere are many challenges involved with the genetic analyses of autopolyploid species, such as the tetraploid potato, Solanum tuberosum (2n = 4x = 48). The development of new analytical methods has made it valuable to re-analyze an F1 population (n = 156) derived from a cross involving ‘Atlantic’, a widely grown chipping variety in the USA. A fully integrated genetic map with 4,285 single nucleotide polymorphisms, spanning 1,630 cM, was constructed with MAPpoly software. We observed that bivalent configurations were the most abundant ones (51.0∼72.4% depending on parent and linkage group), though multivalent configurations were also observed (2.2∼39.2%). Seven traits were evaluated over four years (2006-8 and 2014) and quantitative trait loci (QTL) mapping was carried out using QTLpoly software. Based on a multiple-QTL model approach, we detected 21 QTL for 15 out of 27 trait-year combination phenotypes. A hotspot on linkage group 5 was identified as QTL for maturity, plant yield, specific gravity and internal heat necrosis resistance over different years were co-located. Additional QTL for specific gravity and dry matter were detected with maturity-corrected phenotypes. Among the genes around QTL peaks, we found those on chromosome 5 that have been previously implicated in maturity (StCDF1) and tuber formation (POTH1). These analyses have the potential to provide insights into the biology and breeding of tetraploid potato and other autopolyploid species.


PLoS ONE ◽  
2013 ◽  
Vol 8 (5) ◽  
pp. e63939 ◽  
Author(s):  
Christine A. Hackett ◽  
Karen McLean ◽  
Glenn J. Bryan

2004 ◽  
Vol 109 (3) ◽  
pp. 630-639 ◽  
Author(s):  
G. Aluko ◽  
C. Martinez ◽  
J. Tohme ◽  
C. Castano ◽  
C. Bergman ◽  
...  

PLoS ONE ◽  
2018 ◽  
Vol 13 (7) ◽  
pp. e0199716 ◽  
Author(s):  
Juan David Santa ◽  
Jhon Berdugo-Cely ◽  
Liliana Cely-Pardo ◽  
Mauricio Soto-Suárez ◽  
Teresa Mosquera ◽  
...  

Plants ◽  
2020 ◽  
Vol 9 (6) ◽  
pp. 738 ◽  
Author(s):  
Oksana Lastochkina ◽  
Liudmila Pusenkova ◽  
Darya Garshina ◽  
Ruslan Yuldashev ◽  
Irina Shpirnaya ◽  
...  

The effect of endophytic Bacillus subtilis (strains 10-4, 26D) and their compositions with salicylic acid (SA) on some resistance and quality traits of stored potatoes infected with Fusarium dry rot were studied. The experiments were carried out on hydroponically grown Solanum tuberosum L. tubers that were infected before storage with Fusarium oxysporum and coated with B. subtilis 10-4, 26D with and without exogenous SA, and then stored for six months. It has been shown that 10-4, 26D, 10-4 + SA, and 26D + SA reduced in different levels (up to 30–50%) the incidence of F. oxysporum-caused dry rot (with the highest effect for 10-4 + SA). SA notably enhanced the positive effect of 10-4, while for 26D, such an effect was not observed. All of the tested treatments increased amylase (AMY) and AMY inhibitors activity in infected tubers, while decreased Fusarium-induced protease activity (except in the case of 10-4 + SA, which promoted a slight increase) was revealed. 10-4, 26D, and their compositions with SA decreased (in different degrees) the pathogen-caused lipid peroxidation, proline, and reducing sugars accumulation in potatoes after long-term storage. It was also discovered 10-4 and 26D, regardless of SA presence, decrease pathogen-induced glycoalkaloids α-Solanine and α-Chaconine accumulation and preserved increased levels of starch and total dry matter in infected stored potatoes. The findings indicate endophytic B. subtilis and its compositions with SA is a promising eco-friendly and bio-safe approach to cope with postharvest decays of potato during long-term storage; however, when developing preparations-compositions it should take into account the strain-dependent manner of B. subtilis action together with SA.


Rice ◽  
2016 ◽  
Vol 9 (1) ◽  
Author(s):  
Yeo-Tae Yun ◽  
Chong-Tae Chung ◽  
Young-Ju Lee ◽  
Han-Jung Na ◽  
Jae-Chul Lee ◽  
...  

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