The Effects of SELEX Conditions on the Resultant Aptamer Pools in the Selection of Aptamers Binding to Bacterial Cells

2015 ◽  
Vol 81 (5-6) ◽  
pp. 194-209 ◽  
Author(s):  
Camille L. A. Hamula ◽  
Hanyong Peng ◽  
Zhixin Wang ◽  
Ashley M. Newbigging ◽  
Gregory J. Tyrrell ◽  
...  
Keyword(s):  
2020 ◽  
Vol 16 (6) ◽  
pp. 891-899 ◽  
Author(s):  
Wissam Zam

Probiotics are viable microorganisms widely used for their claimed beneficial effects on the host health. A wide number of researchers proved that the intake of probiotic bacteria has numerous health benefits which created a big market of probiotic foods worldwide. The biggest challenge in the development of these products is to maintain the viability of bacterial cells during the storage of the product as well as throughout the gastrointestinal tract transit after consumption, so that the claimed health benefits can be delivered to the consumer. Different approaches have been proposed for increasing the resistance of these sensitive microorganisms, including the selection of resistant strains, incorporation of micronutrients, and most recently the use of microencapsulation techniques. Microencapsulation has resulted in enhancing the viability of these microorganisms which allows its wide use in the food industry. In this review, the most common techniques used for microencapsulation of probiotics will be presented, as well as the most usual microcapsule shell materials.


Author(s):  
А.А. Грибанькова ◽  
М.А. Агиевич ◽  
О.А. Евтуховская ◽  
В.В. Гурченко ◽  
С. Чжай ◽  
...  

В основе работы лежит исследование воздействия органического соединения (ОС) – гидрокоричной (3-фенилпропановой) кислоты на бактериальные клетки СРБ (сульфатредуцирующих бактерий) являющиеся стимуляторами коррозионных процессов. Подбор условий использования и количественная оценка эффективности ингибирующего (биоцидного) действия исследуемого ОС, которое может быть применено для защиты стали от коррозии в средах, содержащих сульфатредуцирующие бактерии. В ходе исследования было изучено влияние ОС на развитие сульфатредуцирующих бактерий и определены такие параметры, как изменение значения pH и окислительно-восстановительного потенциала образцов в среде, численности бактерий и содержания биогенного сероводорода в зависимости от концентрации используемого ОС. Сделаны основные выводы о ингибирующем коррозию и биоцидном действиях испытуемого органического соединения путем оценки скорости коррозии образцов стали и защитном эффекте в зависимости от выбранных концентраций органического соединения методом гравиметрии. Дополнительная оценка ингибирующего действия была проведена методом электрохимической импедансной спектроскопии и методом снятия поляризационных кривых испытуемых образцов. The study is based on the study of the effect of an organic compound (OC) – hydrocinnamic (3-phenylpropanoic) acid on the bacterial cells of SRB (sulfate-reducing bacteria), which are stimulants of corrosion processes. Selection of conditions of use and a quantitative assessment of the effectiveness of the inhibitory (biocidal) action of the studied OC, which can be used to protect steel from corrosion in environments containing SRB. In the course of the study, the effect of OC on the development of SRB was studied and such parameters as the change in the pH value and the redox potential of the samples in the medium, the number of bacteria and the content of biogenic hydrogen sulfide depending on the concentration of the used OC were determined. The main conclusions are drawn about the inhibitory corrosion and biocidal actions of the test OC by assessing the corrosion rate of steel samples and the protective effect depending on the selected concentrations of the OC by gravimetry. An additional assessment of the inhibitory effect was carried out by the method of electrochemical impedance spectroscopy and by the method of taking the polarization curves of the test samples.


Toxins ◽  
2021 ◽  
Vol 13 (9) ◽  
pp. 644
Author(s):  
Agnieszka Necel ◽  
Sylwia Bloch ◽  
Bożena Nejman-Faleńczyk ◽  
Aleksandra Dydecka ◽  
Gracja Topka-Bielecka ◽  
...  

Shiga toxin-producing Escherichia coli (STEC) can cause severe infections in humans, leading to serious diseases and dangerous complications, such as hemolytic-uremic syndrome. Although cattle are a major reservoir of STEC, the most commonly occurring source of human infections are food products (e.g., vegetables) contaminated with cow feces (often due to the use of natural fertilizers in agriculture). Since the use of antibiotics against STEC is controversial, other methods for protection of food against contaminations by these bacteria are required. Here, we propose a validation system for selection of bacteriophages against STEC contamination. As a model system, we have employed a STEC-specific bacteriophage vB_Eco4M-7 and the E. coli O157:H7 strain no. 86-24, bearing Shiga toxin-converting prophage ST2-8624 (Δstx2::cat gfp). When these bacteria were administered on the surface of sliced cucumber (as a model vegetable), significant decrease in number viable E. coli cells was observed after 6 h of incubation. No toxicity of vB_Eco4M-7 against mammalian cells (using the Balb/3T3 cell line as a model) was detected. A rapid decrease of optical density of STEC culture was demonstrated following addition of a vB_Eco4M-7 lysate. However, longer incubation of susceptible bacteria with this bacteriophage resulted in the appearance of phage-resistant cells which predominated in the culture after 24 h incubation. Interestingly, efficiency of selection of bacteria resistant to vB_Eco4M-7 was higher at higher multiplicity of infection (MOI); the highest efficiency was evident at MOI 10, while the lowest occurred at MOI 0.001. A similar phenomenon of selection of the phage-resistant bacteria was also observed in the experiment with the STEC-contaminated cucumber after 24 h incubation with phage lysate. On the other hand, bacteriophage vB_Eco4M-7 could efficiently develop in host bacterial cells, giving plaques at similar efficiency of plating at 37, 25 and 12 °C, indicating that it can destroy STEC cells at the range of temperatures commonly used for vegetable short-term storage. These results indicate that bacteriophage vB_Eco4M-7 may be considered for its use in food protection against STEC contamination; however, caution should be taken due to the phenomenon of the appearance of phage-resistant bacteria.


Author(s):  
Carlos F. Amábile-Cuevas ◽  
Leticia Martínez ◽  
Irma Rosas

Aims: Some bacterial responses to oxidative stress also diminish antibiotic susceptibility; also, some antibiotics do increase oxidative stress within bacterial cells. Linkage or cross-resistance to prooxidants and antibiotics could facilitate the selection of antibiotic resistance and/or virulence. We made this survey in order to detect this possible linkage in Escherichia coli isolates. Methodology: The susceptibility of 102 E. coli clinical (causative of urinary or gastrointestinal infections) and environmental (rural or urban dust) isolates towards paraquat, H2O2, and antibiotics was measured using disc assays. Catalase and superoxide-dismutase (SOD) activities were measured. Results: Susceptibility to prooxidants was similar across isolates of all four sources, but urinary and urban dust isolates were more resistant to antibiotics. H2O2 "resistant" organisms had more antibiotic resistance phenotypes, particularly towards sulfadiazine and tetracycline. Paraquat "resistance" seems associated to beta-lactam resistance; but paraquat "susceptibility" seems associated to resistance towards chloramphenicol, gentamicin, ciprofloxacin and nitrofurantoin. Prooxidant disc assays correlate to catalase and superoxide-dismutase activities. A weak relationship H2O2/antibiotic-resistance, but not superoxide/antibiotic-resistance, is suggested. Conclusion: Overall, antibiotics exerting their action through oxidative stress, do not seem to have resulted in the co-selection of oxidative stress resistance, or vice versa. However, a possible link between resistance to some antibiotics and to H2O2 might contribute to co-selection between these two chemical insults.


2008 ◽  
Vol 80 (20) ◽  
pp. 7812-7819 ◽  
Author(s):  
Camille L. A. Hamula ◽  
Hongquan Zhang ◽  
Le Luo Guan ◽  
Xing-Fang Li ◽  
X. Chris Le

2005 ◽  
Vol 71 (12) ◽  
pp. 8201-8206 ◽  
Author(s):  
Eva S. Lindström ◽  
Miranda P. Kamst-Van Agterveld ◽  
Gabriel Zwart

ABSTRACT The distribution of 15 typical freshwater bacterial groups in 15 diverse lakes in northern Europe was investigated using reverse line blot hybridization. Statistical evaluation of the data in relation to the characteristics of the lakes showed that pH, temperature, and the theoretical hydrological retention time of the lakes were most strongly related to variations in the distribution of bacterial taxa. This suggests that pH and temperature are steering factors in the selection of taxa and supports the notion that communities in lakes with short water turnover times are influenced by the input of bacterial cells from the drainage areas. Within the beta subdivision of the Proteobacteria (Betaproteobacteria), as well as within the divisions Actinobacteria and Verrucomicrobia, different subgroups were associated differently with environmental variables.


IUCrJ ◽  
2017 ◽  
Vol 4 (2) ◽  
pp. 185-198 ◽  
Author(s):  
Marko Mihelič ◽  
Kristina Vlahoviček-Kahlina ◽  
Miha Renko ◽  
Stephane Mesnage ◽  
Andreja Doberšek ◽  
...  

Peptidoglycan is a giant molecule that forms the cell wall that surrounds bacterial cells. It is composed of alternatingN-acetylglucosamine (NAG) andN-acetylmuramic acid (NAM) residues connected by β-(1,4)-glycosidic bonds and cross-linked with short polypeptide chains. Owing to the increasing antibiotic resistance against drugs targeting peptidoglycan synthesis, studies of enzymes involved in the degradation of peptidoglycan, such asN-acetylglucosaminidases, may expose new, valuable drug targets. The scientific challenge addressed here is how lysozymes, muramidases which are likely to be the most studied enzymes ever, and bacterialN-acetylglucosaminidases discriminate between two glycosidic bonds that are different in sequence yet chemically equivalent in the same NAG-NAM polymers. In spite of more than fifty years of structural studies of lysozyme, it is still not known how the enzyme selects the bond to be cleaved. Using macromolecular crystallography, chemical synthesis and molecular modelling, this study explains how these two groups of enzymes based on an equivalent structural core exhibit a difference in selectivity. The crystal structures ofStaphylococcus aureusN-acetylglucosaminidase autolysin E (AtlE) alone and in complex with fragments of peptidoglycan revealed thatN-acetylglucosaminidases and muramidases approach the substrate at alternate glycosidic bond positions from opposite sides. The recognition pocket for NAM residues in the active site ofN-acetylglucosaminidases may make them a suitable drug target.


1986 ◽  
Vol 18 (4-5) ◽  
pp. 149-153 ◽  
Author(s):  
R. N. Purdy ◽  
B. N. Dancer ◽  
M. J. Day ◽  
D. J. Stickler

Vegetative bacterial cells, bacterial spores and bacterial viruses have all been used to trace the dispersion of sewage from coastal outfalls. The phages are considered to have advantages over other mlcroblal tracers in that they can be prepared in high titres (lO13 particles ml−1) and can be assayed In less than 8h. Furthermore, because these viruses only Infect bacteria they represent no health risk. In this paper we describe the selection of five Bacillus phages. from our collection, for use as tracers. They each have distinct, clear plaque morphologies and specific bacterial host ranges. The stability of these phages in sea water was compared to that of E. coll and some other phages. We report on the use of a membrane filtration technique to assay phages in 100ml volumes of sea water and present data from a field study where one of these tracers was released from a coastal outfall.


2014 ◽  
Vol 174 (7) ◽  
pp. 2548-2556 ◽  
Author(s):  
Iêda Mendes Ferreira ◽  
Camila Maria de Souza Lacerda ◽  
Lígia Santana de Faria ◽  
Cristiane Rodrigues Corrêa ◽  
Antero Silva Ribeiro de Andrade
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