scholarly journals Scaling gene expression for cell size control and senescence in Saccharomyces cerevisiae

2020 ◽  
Author(s):  
Yuping Chen ◽  
Bruce Futcher

Abstract Cells divide with appropriate frequency by coupling division to growth—that is, cells divide only when they have grown sufficiently large. This process is poorly understood, but has been studied using cell size mutants. In principle, mutations affecting cell size could affect the mean size (“set-point” mutants), or they could affect the variability of sizes (“homeostasis” mutants). In practice, almost all known size mutants affect set-point, with little effect on size homeostasis. One model for size-dependent division depends on a size-dependent gene expression program: Activators of cell division are over-expressed at larger and larger sizes, while inhibitors are under-expressed. At sufficiently large size, activators overcome inhibitors, and the cell divides. Amounts of activators and inhibitors determine the set-point, but the gene expression program (the rate at which expression changes with cell size) determines the breadth of the size distribution (homeostasis). In this model, set-point mutants identify cell cycle activators and inhibitors, while homeostasis mutants identify regulators that couple expression of activators and inhibitors to size. We consider recent results suggesting that increased cell size causes senescence, and suggest that at very large sizes, an excess of DNA binding proteins leads to size induced senescence.

2021 ◽  
Author(s):  
Michael C Lanz ◽  
Evgeny Zatulovskiy ◽  
Matthew P Swaffer ◽  
Lichao Zhang ◽  
Shuyuan Zhang ◽  
...  

Cell size is tightly controlled in healthy tissues, but it is poorly understood how cell size affects cell physiology. To address this, we measured how the proteome changes with cell size. Protein concentration changes are widespread, depend on the DNA-to-cell size ratio, and are predicted by subcellular localization, size-dependent mRNA concentrations, and protein turnover. As proliferating cells grow larger, concentration changes associated with cellular senescence are increasingly pronounced, suggesting that large size may be a cause rather than just a consequence of cell senescence. Consistent with this hypothesis, larger cells are prone to replicative-, DNA damage-, and CDK4/6i-induced senescence. More broadly, our findings show how cell size could impact many aspects of cell physiology through remodeling the proteome, thereby providing a rationale for cell size control to optimize cell function.


2021 ◽  
Author(s):  
Chen Jia ◽  
Abhyudai Singh ◽  
Ramon Grima

Intracellular reaction rates depend on concentrations and hence their levels are often regulated. However classical models of stochastic gene expression lack a cell size description and cannot be used to predict noise in concentrations. Here, we construct a model of gene product dynamics that includes a description of cell growth, cell division, size-dependent gene expression, gene dosage compensation, and size control mechanisms that can vary with the cell cycle phase. We obtain expressions for the approximate distributions and power spectra of concentration fluctuations which lead to insight into the emergence of concentration homeostasis. Furthermore, we find that (i) the conditions necessary to suppress cell division-induced concentration oscillations are difficult to achieve; (ii) mRNA concentration and number distributions can have different number of modes; (iii) certain size control strategies are ideal because they maintain constant mean concentrations whilst minimising concentration noise. Predictions are confirmed using lineage data for E. coli, fission yeast and budding yeast.


2002 ◽  
Vol 277 (48) ◽  
pp. 46840
Author(s):  
Christophe Grundschober ◽  
Maria Luisa Malosio ◽  
Laura Astolfi ◽  
Tiziana Giordano ◽  
Patrick Nef ◽  
...  

2018 ◽  
Vol 154 (6) ◽  
pp. S-585
Author(s):  
Sarah F. Andres ◽  
Kathy N. Williams ◽  
Kathryn E. Hamilton ◽  
Rei Mizuno ◽  
Jeff Headd ◽  
...  

2017 ◽  
Vol 1 (Special Issue) ◽  
pp. 108-108
Author(s):  
Aksheev Bhambri ◽  
Neeraj Dhaunta ◽  
Surendra Singh Patel ◽  
Beena Pillai

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