Structural analysis of a shrimp thymidylate synthase reveals species-specific interactions with dUMP and raltitrexed

2020 ◽  
Vol 38 (6) ◽  
pp. 1891-1899
Author(s):  
Changshui Liu ◽  
Kun Zang ◽  
Shihao Li ◽  
Fuhua Li ◽  
Qingjun Ma
Keyword(s):  
Structural Analysis ◽  
Thymidylate Synthase ◽  
Specific Interactions ◽  
Species Specific

Role of Glycosphingolipids in HIV-1 Entry: Requirement of Globotriosylceramide (Gb3) in CD4/CXCR4-dependent Fusion

1999 ◽  
Vol 19 (4) ◽  
pp. 317-325 ◽  
Author(s):  
Anu Puri ◽  
Peter Hug ◽  
Kristine Jernigan ◽  
Patrick Rose ◽  
Robert Blumenthal
Keyword(s):  
Structural Analysis ◽  
Cell Fusion ◽  
Envelope Glycoprotein ◽  
Human Erythrocyte ◽  
Head Group ◽  
Specific Interactions ◽  
Cd4 Cells ◽  
Fusion Site ◽  
Hiv 1

We have recently shown that addition of human erythrocyte glycosphingolipids (GSL) to non-human CD4+ or GSL-depleted human CD4+ cells rendered those cells susceptible to gp120-gp41-mediated cell fusion (Puri et al., BBRC, 1998). One GSL fraction (Fraction 3) isolated from human erythrocyte GSL mixture exhibited the highest recovery of fusion following incorporation into CD4+ non-human and GSL-depleted HeLa-CD4 cells (HeLa-CD4/GSL-). Structural analysis of Fraction 3 showed that this GSL had identical head group as the known GSL, Gal(α1→4)Gal(β1→4)Glc-Ceramide (Gb3) (Puri et al., PNAS, 1998). Here we report that presence of Gb3 in CD4+/CXCR4+ cells but not CD4+/CXCR4- cells allows fusion with HIV-1Lai-envelope glycoprotein expressing cells (TF228). Therefore, Gb3 functions in conjunction with HIV-1 co-receptor, CXCR4 to promote fusion. We propose that Gb3 functions by recruiting CD4 and/or CXCR4 at the fusion site through structurally specific interactions.

scholarly journals Lower Airway Bacterial Colonization Patterns and Species-Specific Interactions in Chronic Obstructive Pulmonary Disease

2018 ◽  
Vol 56 (10) ◽  
Author(s):  
David M. Jacobs ◽  
Heather M. Ochs-Balcom ◽  
Jiwei Zhao ◽  
Timothy F. Murphy ◽  
Sanjay Sethi
Keyword(s):  
Chronic Obstructive Pulmonary Disease ◽  
Pulmonary Disease ◽  
Bacterial Colonization ◽  
Bacterial Species ◽  
Chronic Obstructive ◽  
Specific Interactions ◽  
Obstructive Pulmonary Disease ◽  
Content Type ◽  
Copd Patients ◽  
Species Specific

ABSTRACT Little is known about interactions between nontypeable Haemophilus influenzae, Moraxella catarrhalis, Streptococcus pneumoniae, and Pseudomonas aeruginosa in the lower respiratory tract in chronic obstructive pulmonary disease (COPD) patients. We characterized colonization by these four bacterial species, determined species-specific interactions, and estimated the effects of host factors on bacterial colonization among COPD patients. We conducted a prospective cohort study in veterans with COPD that involved monthly clinical assessment and sputum cultures with an average duration of follow-up of 4.5 years. Cultures were used for bacterial identification. We analyzed bacterial interactions using generalized linear mixed models after controlling for clinical and demographic variables. The outcomes of interest were the relationships between bacteria based on clinical status (stable or exacerbation). One hundred eighty-one participants completed a total of 8,843 clinic visits, 30.8% of which had at least one of the four bacteria isolated. H. influenzae was the most common bacterium isolated (14.4%), followed by P. aeruginosa (8.1%). In adjusted models, S. pneumoniae colonization was positively associated with H. influenzae colonization (odds ratio [OR], 2.79; 95% confidence interval [CI], 2.03 to 3.73). We identified negative associations between P. aeruginosa and H. influenzae (OR, 0.15; 95% CI, 0.10 to 0.22) and P. aeruginosa and M. catarrhalis (OR, 0.51; 95% CI, 0.35 to 0.75). Associations were similar during stable and exacerbation visits. Recent antimicrobial therapy was associated with a lower prevalence of S. pneumoniae, H. influenzae, and M. catarrhalis, but not P. aeruginosa. Our findings support the presence of specific interspecies interactions between common bacteria in the lower respiratory tracts of COPD patients. Further work is necessary to elucidate the mechanisms of these complex interactions that shift bacterial species.

Spatial partitioning in the use of structural woody habitat supports the cohabitation of two cod species in a large lowland river

2016 ◽  
Vol 67 (12) ◽  
pp. 1835 ◽  
Author(s):  
J. A. Lieschke ◽  
J. P. Lyon ◽  
P. D. Moloney ◽  
S. J. Nicol
Keyword(s):  
Lowland River ◽  
Specific Interactions ◽  
Negative Consequences ◽  
Catch Per Unit Effort ◽  
Spatial Partitioning ◽  
Murray River ◽  
Eastern Australia ◽  
The Common ◽  
Species Specific ◽  
Murray Cod

Many freshwater fish worldwide have been shown to use Structural Woody Habitat (SWH) for a variety of reasons. The mid reaches of the Murray River, a large lowland river in south-eastern Australia, was surveyed by boat electrofishing, to investigate the use of SWH type (hollows, rootmass and solids), SWH distance to bank (near bank, intermediate to bank and mid-channel) and the interaction between SWH type and distance to bank. The study found that Murray cod catch per unit effort (CPUE) increased in near-bank areas when hollows were a component of the SWH. The CPUE of trout cod was higher when hollows were present. However, the interactions between distance to bank and hollow SWH were complex and dependent on presence or absence of rootmass. The species-specific interactions between SWH microhabitat and distance to bank found within this study has important relevance for stream managers. The common practice of realigning SWH favours Murray cod over trout cod, which could have negative consequences for the endangered trout cod. More broadly, managers may need to consider a balance of SWH type and where it is placed in the river for the species they are targeting when rehabilitating rivers via the introduction of SWH.

scholarly journals Nematophagous Pleurotus Species Consume Some Nematode Species but Are Themselves Consumed by Others

Forests ◽  
2019 ◽  
Vol 10 (5) ◽  
pp. 404 ◽  
Author(s):  
Maria Marlin ◽  
Avery Wolf ◽  
Maryam Alomran ◽  
Lynn Carta ◽  
George Newcombe
Keyword(s):  
Biological Control ◽  
Pleurotus Ostreatus ◽  
Nematode Species ◽  
Nematophagous Fungi ◽  
Specific Interactions ◽  
Pleurotus Pulmonarius ◽  
Pleurotus Species ◽  
Species Specific

Pleurotus species are said to be nematophagous because they paralyze and consume some bacterial-feeding nematodes. It has never been clear whether that means all nematodes. Here we tested thirteen bacterial-feeding nematode species: seven of family Rhabditidae, three of Cephalobidae (one with three populations), two of Panagrolaimidae, and one of Diplogastridae. Nematodes interacted on water agar with toxin-producing isolates of Pleurotus pulmonarius (Fr.) Quél. and Pleurotus ostreatus (Jacq.) P. Kumm. Of the thirteen species, nine were susceptible to P. pulmonarius (all individuals were paralyzed) but four (four populations of two cephalobid species, one rhabditid, and one panagrolaimid) survived exposure to P. pulmonarius. The resistant four species not only survived but multiplied their numbers by consuming P. pulmonarius. A similar trend was observed with nematodes interacting with P. ostreatus; however, six species were resistant to P. ostreatus. Interestingly, four of these six species were susceptible to P. pulmonarius, and interactions overall were differential. Pleurotus species are nematophagous toward some nematodes but are also consumed by others in three of the four families assayed. Species-specific interactions point to the need for studies of the host ranges of both “nematophagous” fungi and “fungivorous” nematodes, especially if they are to be used for biological control.

Crystal structures of thymidylate synthase from nematodes, Trichinella spiralis and Caenorhabditis elegans, as a potential template for species-specific drug design

Pteridines ◽  
2013 ◽  
Vol 24 (1) ◽  
pp. 87-91 ◽  
Author(s):  
Anna Dowierciał ◽  
Piotr Wilk ◽  
Wojciech Rypniewski ◽  
Tomasz Frączyk ◽  
Adam Jarmuła ◽  
...  
Keyword(s):  
Caenorhabditis Elegans ◽  
Crystal Structures ◽  
Thymidylate Synthase ◽  
Diffraction Data ◽  
Trichinella Spiralis ◽  
Diffusion Method ◽  
Space Group ◽  
C Elegans ◽  
Thymidylate Synthases ◽  
Species Specific

AbstractCrystal structures were solved of the binary complexes Trichinella spiralis and Caenorhabditis elegans thymidylate synthases with deoxyuridine monophosphate (dUMP), with crystals obtained by the vapor diffusion method in hanging drops. For the T. spiralis thymidylate synthase-dUMP complex, the diffraction data were collected at the BESSY Synchrotron to 1.9 Å resolution. The crystal belongs to the space group P1 with two dimers in the asymmetric unit (ASU). For the C. elegans TS-dUMP complex crystal, the diffraction data were collected at the BESSY Synchrotron to 2.48 Å resolution, and the crystal belongs to the space group P 32 2 1, with two monomers (one dimer) in the ASU. Structural comparisons were made of both structures and each of them with the corresponding mouse thymidylate synthase complex.

scholarly journals Requirement of Species-Specific Interactions for the Activation of Human γδ T Cells by Pamidronate

2003 ◽  
Vol 170 (7) ◽  
pp. 3608-3613 ◽  
Author(s):  
Yu Kato ◽  
Yoshimasa Tanaka ◽  
Hidenori Tanaka ◽  
Seiji Yamashita ◽  
Nagahiro Minato
Keyword(s):  
T Cells ◽  
Γδ T Cells ◽  
Specific Interactions ◽  
Species Specific

scholarly journals Movement of potexviruses requires species-specific interactions among the cognate triple gene block proteins, as revealed by a trans-complementation assay based on the bamboo mosaic virus satellite RNA-mediated expression system

2006 ◽  
Vol 87 (5) ◽  
pp. 1357-1367 ◽  
Author(s):  
Ming-Kuem Lin ◽  
Chung-Chi Hu ◽  
Na-Sheng Lin ◽  
Ban-Yang Chang ◽  
Yau-Heiu Hsu
Keyword(s):  
Mosaic Virus ◽  
Expression System ◽  
Triple Gene Block ◽  
Ectopic Expression ◽  
Cell Movement ◽  
Specific Interactions ◽  
Satellite Rna ◽  
Complementation Assay ◽  
Gene Block ◽  
Species Specific

The intra- and intercellular transport of potexviruses require interactions among viral RNA, coat protein and elements of the triple gene block proteins (TGBps). In this study, the requirement of bamboo mosaic virus (BaMV) TGBps for movement functions and the compatibilities with those of two potexviruses, Potato virus X (PVX) and Foxtail mosaic virus (FoMV), were examined using a satellite RNA-mediated trans-complementation assay system. Single or multiple TGBps of BaMV, PVX and FoMV were expressed from BaMV satellite RNA (satBaMV RNA) vectors to complement the functions of green fluorescent protein-tagged, movement-defective BaMV with mutation(s) in the matching gene(s). It was found that individual BaMV TGBps expressed from the satellite vector could function normally in trans, whereas bi-gene BaMV TGBp constructs in which the expression of TGBp3 might be impaired and individual TGBp genes from PVX or FoMV could not complement the movement functions of the defective helper viruses. Furthermore, alterations of the ratio among TGBps by ectopic expression of individual components of TGBps from satBaMV RNA vectors did not affect the cell-to-cell movement capabilities of wild-type BaMV significantly. The results indicate that species-specific interactions among movement proteins are obligatory for the cell-to-cell movement of BaMV and possibly other potexviruses.

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