A stream by any other name: does β-diversity differ between Nearctic and Neotropical streams?

Hydrobiologia ◽  
2021 ◽  
Author(s):  
John W. McCreadie ◽  
Neusa Hamada ◽  
Maria E. Grillet ◽  
Peter H. Adler
Keyword(s):  
Β Diversity ◽  
Neotropical Streams

Patterns in diversity and composition of the microbenthos of subarctic intertidal beaches with different morphodynamics

2020 ◽  
Vol 648 ◽  
pp. 19-38
Author(s):  
AI Azovsky ◽  
YA Mazei ◽  
MA Saburova ◽  
PV Sapozhnikov
Keyword(s):  
Species Abundance ◽  
Abundance Ratio ◽  
Wave Action ◽  
Coarse Grained ◽  
Sediment Properties ◽  
Β Diversity ◽  
Α Diversity ◽  
Wide Range ◽  
Similar Mode ◽  
Abundance And Diversity

Diversity and composition of benthic diatom algae and ciliates were studied at several beaches along the White and Barents seas: from highly exposed, reflective beaches with coarse-grained sands to sheltered, dissipative silty-sandy flats. For diatoms, the epipelic to epipsammic species abundance ratio was significantly correlated with the beach index and mean particle size, while neither α-diversity measures nor mean cell length were related to beach properties. In contrast, most of the characteristics of ciliate assemblages (diversity, total abundance and biomass, mean individual weight and percentage of karyorelictids) demonstrated a strong correlation to beach properties, remaining low at exposed beaches but increasing sharply in more sheltered conditions. β-diversity did not correlate with beach properties for either diatoms or ciliates. We suggest that wave action and sediment properties are the main drivers controlling the diversity and composition of the intertidal microbenthos. Diatoms and ciliates, however, demonstrated divergent response to these factors. Epipelic and epipsammic diatoms exhibited 2 different strategies to adapt to their environments and therefore were complementarily distributed along the environmental gradient and compensated for each other in diversity. Most ciliates demonstrated a similar mode of habitat selection but differed in their degree of tolerance. Euryporal (including mesoporal) species were relatively tolerant to wave action and therefore occurred under a wide range of beach conditions, though their abundance and diversity were highest in fine, relatively stable sediments on sheltered beaches, whereas the specific interstitial (i.e. genuine microporal) species were mostly restricted to only these habitats.

Fish communities critically depend on forest subsidies in small neotropical streams with high biodiversity value

Biotropica ◽  
2021 ◽  
Author(s):  
Jean‐Marc Roussel ◽  
Raphael Covain ◽  
Regis Vigouroux ◽  
Luc Allard ◽  
Anne Treguier ◽  
...  
Keyword(s):  
Fish Communities ◽  
Neotropical Streams

scholarly journals Effect of hay type on cecal and fecal microbiome and fermentation parameters in horses

2020 ◽  
Author(s):  
Rachel J Sorensen ◽  
James S Drouillard ◽  
Teresa L Douthit ◽  
Qinghong Ran ◽  
Douglas G Marthaler ◽  
...  
Keyword(s):  
Fixed Effects ◽  
Volatile Fatty Acids ◽  
Random Effect ◽  
Alpha Diversity ◽  
Sampling Location ◽  
Rrna Gene ◽  
Illumina Hiseq ◽  
Fecal Microbiome ◽  
Β Diversity ◽  
Fermentation Parameters

Abstract The effect of hay type on the microbiome of the equine gastrointestinal tract is relatively unexplored. Our objective was to characterize the cecal and fecal microbiome of mature horses consuming alfalfa or Smooth Bromegrass (brome) hay. Six cecally cannulated horses were used in a split plot design run as a crossover in 2 periods. Whole plot treatment was ad libitum access to brome or alfalfa hay fed over two 21-d acclimation periods with subplots of sampling location (cecum and rectum) and sampling hour. Each acclimation period was followed by a 24-h collection period where cecal and fecal samples were collected every 3 h for analysis of pH and volatile fatty acids (VFA). Fecal and cecal samples were pooled and sent to a commercial lab (MR DNA, Shallowater, TX) for amplification of the V4 region of the 16S rRNA gene and sequenced using Illumina HiSeq. Main effects of hay on VFA, pH, and taxonomic abundances were analyzed using the MIXED procedure of SAS 9.4 with fixed effects of hay, hour, location, period, all possible interactions and random effect of horse. Alpha and β diversity were analyzed using the R Dame package. Horses fed alfalfa had greater fecal than cecal pH (P ≤ 0.05) whereas horses fed brome had greater cecal than fecal pH (P ≤ 0.05). Regardless of hay type, total volatile fatty acid (VFA) concentrations were greater (P ≤ 0.05) in the cecum than in feces, and alfalfa resulted in greater (P ≤ 0.05) VFA concentrations than brome in both sampling locations. Alpha diversity was greater (P ≤ 0.05) in fecal compared to cecal samples. Microbial community structure within each sampling location and hay type differed from one another (P ≤ 0.05). Bacteroidetes were greater (P ≤ 0.05) in the cecum compared to the rectum, regardless of hay type. Firmicutes and Firmicutes:Bacteroidetes were greater (P ≤ 0.05) in the feces compared to cecal samples of alfalfa-fed horses. In all, fermentation parameters and bacterial abundances were impacted by hay type and sampling location in the hindgut.

scholarly journals Oral and Intravenous Iron Therapy Differentially Alter the On- and Off-Tumor Microbiota in Anemic Colorectal Cancer Patients

Cancers ◽  
2021 ◽  
Vol 13 (6) ◽  
pp. 1341
Author(s):  
Oliver Phipps ◽  
Hafid O. Al-Hassi ◽  
Mohammed N. Quraishi ◽  
Edward A. Dickson ◽  
Jonathan Segal ◽  
...  
Keyword(s):  
Colorectal Cancer ◽  
Ferrous Sulphate ◽  
Intravenous Iron ◽  
Oral Iron ◽  
Iron Therapy ◽  
Deficiency Anemia ◽  
Ferric Carboxymaltose ◽  
Β Diversity ◽  
Post Surgery ◽  
Intravenous Iron Therapy

Iron deficiency anemia is a common complication of colorectal cancer and may require iron therapy. Oral iron can increase the iron available to gut bacteria and may alter the colonic microbiota. We performed an intervention study to compare oral and intravenous iron therapy on the colonic tumor-associated (on-tumor) and paired non-tumor-associated adjacent (off-tumor) microbiota. Anemic patients with colorectal adenocarcinoma received either oral ferrous sulphate (n = 16) or intravenous ferric carboxymaltose (n = 24). On- and off-tumor biopsies were obtained post-surgery and microbial profiling was performed using 16S ribosomal RNA analysis. Off-tumor α- and β-diversity were significantly different between iron treatment groups. No differences in on-tumor diversity were observed. Off-tumor microbiota of oral iron-treated patients showed higher abundances of the orders Clostridiales, Cytophagales, and Anaeroplasmatales compared to intravenous iron-treated patients. The on-tumor microbiota was enriched with the orders Lactobacillales and Alteromonadales in the oral and intravenous iron groups, respectively. The on- and off-tumor microbiota associated with intravenous iron-treated patients infers increased abundances of enzymes involved in iron sequestration and anti-inflammatory/oncogenic metabolite production, compared to oral iron-treated patients. Collectively, this suggests that intravenous iron may be a more appropriate therapy to limit adverse microbial outcomes compared to oral iron.

scholarly journals Monitoring of Neotropical Streams Using Macroinvertebrate Communities: Evidence from Honduras

Environments ◽  
2021 ◽  
Vol 8 (4) ◽  
pp. 27
Author(s):  
Stefano Fenoglio ◽  
Alberto Doretto
Keyword(s):  
Water Quality ◽  
Working Party ◽  
Biological Indicators ◽  
Environmental Conservation ◽  
Taxon Richness ◽  
Macroinvertebrate Communities ◽  
Class A ◽  
Neotropical Streams ◽  
Local Contribution ◽  
Level Identification

Assessing the water quality by using biological indicators is a reliable and economically feasible way to promote environmental conservation in developing tropical countries. Here, we report one of the few examples of river biomonitoring in Honduras. In June 2005, benthic macroinvertebrates were collected from six sites in the Río Cangrejal basin. An adapted version of the Biological Monitoring Working Party index (BMWP) was used to assess the water quality because it is simple, consolidated, relatively easy to use, and needs a family-level identification. Moreover, two other community metrics were calculated, namely the total taxon richness and local contribution to beta diversity (LCBD). Differences in the biomonitoring and diversity metrics among sites and their correlations were statistically tested. Thirty-nine macroinvertebrate taxa were collected and, despite significant differences in the BMWP score, all sampling sites were classified in the high environmental quality class. A very strong and positive correlation between the BMPW and taxon richness was found, while LCBD did not vary significantly and did not correlate with the other metrics. Our results suggest that taxon richness could be used as a surrogate indicator to assess the water quality when consolidate biomonitoring methods are not available.

scholarly journals Seasonal feeding plasticity can facilitate coexistence of dominant omnivores in Neotropical streams

2021 ◽  
Author(s):  
Mayara P. Neves ◽  
Pavel Kratina ◽  
Rosilene L. Delariva ◽  
J. Iwan Jones ◽  
Clarice B. Fialho
Keyword(s):  
Seasonal Variation ◽  
Fish Species ◽  
Resource Availability ◽  
Seasonal Changes ◽  
Dry Season ◽  
Diet Overlap ◽  
Isotopic Niche ◽  
Neotropical Streams ◽  
Feeding Plasticity ◽  
The Impact

AbstractCoexistence of ecomorphologically similar species in diverse Neotropical ecosystems has been a focus of long-term debate among ecologists and evolutionary biologists. Such coexistence can be promoted by trophic plasticity and seasonal changes in omnivorous feeding. We combined stomach content and stable isotope analyses to determine how seasonal variation in resource availability influences the consumption and assimilation of resources by two syntopic fish species, Psalidodon aff. gymnodontus and P. bifasciatus, in the Lower Iguaçu basin. We also tested the impact of seasonality on trophic niche breadth and diet overlap of these two dominant omnivores. Seasonal changes in resource availability strongly influenced the consumption and assimilation of resources by the two fish species. Both species exhibited high levels of omnivory, characterized by high diversity of allochthonous resources in the wet season. Terrestrial invertebrates were the main component of diet during this season. However, in the dry season, both species reduced their isotopic niches, indicating diet specialization. High diet overlap was observed in both seasons, but the isotopic niche overlap was smaller in the dry season. Substantial reduction in the isotopic niche of P. bifascistus and a shift toward aquatic invertebrates can facilitate coexistence during this season of resource shortage. Feeding plasticity allows omnivorous fish to adjust their trophic niches according to seasonality, promoting the exploitation of different resources during periods of greater resource diversity. This seasonal variation could be an important mechanism that contributes to the resource partitioning and coexistence of dominant omnivores in Neotropical streams.

scholarly journals Decomposing multiple β‐diversity reveals non‐random assembly of the waterbird communities across anthropogenic subsidence wetlands

2021 ◽  
Author(s):  
Chunlin Li ◽  
Xue Wang ◽  
Baowei Zhang ◽  
Peng Cui ◽  
Gang Feng ◽  
...  
Keyword(s):  
Β Diversity

Unraveling the drivers of plant taxonomic and phylogenetic β-diversity in a human-modified tropical dry forest

2021 ◽  
Author(s):  
Kátia F. Rito ◽  
Víctor Arroyo-Rodríguez ◽  
Jeannine Cavender-Bares ◽  
Edgar E. Santo-Silva ◽  
Gustavo Souza ◽  
...  
Keyword(s):  
Tropical Dry Forest ◽  
Dry Forest ◽  
Β Diversity

Gut microbiome of the emerald ash borer, Agrilus planipennis Fairmaire, and its relationship with insect population density

2020 ◽  
Vol 96 (8) ◽  
Author(s):  
Judith Mogouong ◽  
Philippe Constant ◽  
Robert Lavallée ◽  
Claude Guertin
Keyword(s):  
Population Density ◽  
Gut Microbiome ◽  
Emerald Ash Borer ◽  
Agrilus Planipennis ◽  
Economic Damage ◽  
Taxonomic Structure ◽  
Rrna Gene ◽  
Local Conditions ◽  
Β Diversity ◽  
Α Diversity

ABSTRACT The gut microbial communities of beetles play crucial roles in their adaptive capacities. Environmental factors such as temperature or nutrition naturally affect the insect microbiome, but a shift in local conditions like the population density on a host tree could also lead to changes in the microbiota. The emerald ash borer (EAB), Agrilus planipennis Fairmaire, is an exotic wood borer that causes environmental and economic damage to ash trees in North America. This study aimed to describe the taxonomic structure of the EAB gut microbiome and explore its potential relationship with borer population size. The number of EAB adults collected per tree through a 75 km transect from an epicenter allowed the creation of distinct classes of population density. The Gammaproteobacteria and Ascomycota predominated in bacterial and fungal communities respectively, as determined by sequencing of the bacterial 16S rRNA gene and the fungal internal transcribed spacer ITS2. Species richness and diversity of the bacterial community showed significant dependence on population density. Moreover, α-diversity and β-diversity analysis revealed some indicator amplicon sequence variants suggesting that the plasticity of the gut microbiome could be related to the EAB population density in host trees.

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