scholarly journals Comparing Methods for Assessing Chimpanzee (Pan troglodytes schweinfurthii) Party Size: Observations, Camera Traps, and Bed Counts from a Savanna–Woodland Mosaic in the Issa Valley, Tanzania

2020 ◽  
Vol 41 (6) ◽  
pp. 901-915 ◽  
Author(s):  
Daphne N. Vink ◽  
Fiona A. Stewart ◽  
Alex K. Piel

AbstractStudying animal grouping behavior is important for understanding the causes and consequences of sociality and has implications for conservation. Chimpanzee (Pan troglodytes) party size is often assessed by counting individuals or extracted indirectly from camera trap footage or the number of nests. Little is known, however, about consistency across methods for estimating party size. We collected party size data for wild chimpanzees in the Issa valley, western Tanzania, using direct observations, camera traps, and nest counts over six years (2012–2018). We compared mean monthly party size estimates calculated using each method and found that estimates derived from direct observations were weakly positively correlated with those derived from camera traps. Estimates from nest counts were not significantly correlated with either direct observations or camera traps. Overall observed party size was significantly larger than that estimated from both camera traps and nest counts. In both the dry and wet seasons, observed party size was significantly larger than camera trap party size, but not significantly larger than nest party size. Finally, overall party size and wet season party size estimated from camera traps were significantly smaller than nest party size, but this was not the case in the dry season. Our results reveal how data collection methods influence party size estimates in unhabituated chimpanzees and have implications for comparative analysis within and across primate communities. Specifically, future work must consider how estimates were calculated before we can reliably investigate environmental influences on primate behavior.

Camera traps are used to recover images of animals in their habitats to help in the conservation of fauna. Millions of images are captured by camera traps and extracting information from these data delays and consumes enough resources so sometimes millions of images cannot be used due to lack of resources. That is why researchers have proposed solution approaches using Convolutional Neural Networks (CNNs) and object detection models to be able to automate the retrieval of information from these images. We used Faster R-CNN and data augmentation techniques on Gold Standard Snapshot Serengeti Dataset to detect animals in images and count them. The performances of the two models (the one trained on the original dataset and the one trained on the augmented dataset) were compared to show the importance of having more data for this task. Using the augmented dataset, we trained our model which reached an accuracy of 98.26% for classification of the proposed regions, an accuracy of 79.55% for counting the species present on the images and a mAP of 95.3%. For future work, the model can be trained to recognize the actions and characteristics of animals and tuned to be more efficient for counting task.


2020 ◽  
pp. 1-16
Author(s):  
S. THOBEKA GUMEDE ◽  
DAVID A. EHLERS SMITH ◽  
YVETTE C. EHLERS SMITH ◽  
SAMUKELISIWE P. NGCOBO ◽  
MBALENHLE T. SOSIBO ◽  
...  

Summary Establishing the specific habitat requirements of forest specialists in fragmented natural habitats is vital for their conservation. We used camera-trap surveys and microhabitat-scale covariates to assess the habitat requirements, probability of occupancy and detection of two terrestrial forest specialist species, the Orange Ground-thrush Geokichla gurneyi and the Lemon Dove Aplopelia larvata during the breeding and non-breeding seasons of 2018–2019 in selected Southern Mistbelt Forests of KwaZulu-Natal and the Eastern Cape, South Africa. A series of camera-trap surveys over 21 days were conducted in conjunction with surveys of microhabitat structural covariates. During the wet season, percentage of leaf litter cover, short grass cover, short herb cover, tall herb cover and saplings 0–2 m, stem density of trees 6–10 m and trees 16–20 m were significant structural covariates for influencing Lemon Dove occupancy. In the dry season, stem density of 2–5 m and 10–15 m trees, percentage tall herb cover, short herb cover and 0–2 m saplings were significant covariates influencing Lemon Dove occupancy. Stem density of trees 2–5 m and 11–15 m, percentage of short grass cover and short herb cover were important site covariates influencing Orange Ground-thrush occupancy in the wet season. Our study highlighted the importance of a diverse habitat structure for both forest species. A high density of tall/mature trees was an essential microhabitat covariate, particularly for sufficient cover and food for these ground-dwelling birds. Avian forest specialists play a vital role in providing ecosystem services perpetuating forest habitat functioning. Conservation of the natural heterogeneity of their habitat is integral to management plans to prevent the decline of such species.


Primates ◽  
2021 ◽  
Author(s):  
Laura Martínez-Íñigo ◽  
Pauline Baas ◽  
Harmonie Klein ◽  
Simone Pika ◽  
Tobias Deschner

AbstractIntercommunity competition in chimpanzees (Pan troglodytes) has been widely studied in eastern (P. t. schweinfurthii) and western (P. t. verus) communities. Both subspecies show hostility towards neighboring communities but differ in rates of lethal attacks and female involvement. However, relatively little is known about the territorial behavior of the two other subspecies, central (P. t. troglodytes) and Nigeria-Cameroon chimpanzees (P. t. ellioti). Here, we present the first insights into intercommunity interactions of individuals of a community of central chimpanzees living in the Loango National Park in Gabon. The presence of individuals of neighboring communities in the Rekambo home range was assessed using 27 camera traps. Information was compiled on intergroup interactions recorded before (2005–2016) and after (January 2017–June 2019) the habituation of the community. Individuals from neighboring communities entered the core area, where nine out of 16 recorded intercommunity encounters occurred. Males were the main participants in territorial patrols and intercommunity aggressions. Females were part of all six territorial patrols recorded and dependent offspring participated in five patrols. Females were involved in intercommunity aggression in five out of twelve recorded encounters in which there was visual contact between communities. While the intercommunity encounter rate was lower than that reported across most other long-term chimpanzee sites, the annual intercommunity killing rate was among the highest. These results suggest that the frequency of lethal attacks at Loango is comparable to that reported for the eastern subspecies. In contrast, female involvement in intercommunity interactions mirrors that of the western subspecies.


PLoS ONE ◽  
2021 ◽  
Vol 16 (3) ◽  
pp. e0247536
Author(s):  
Bart J. Harmsen ◽  
Nicola Saville ◽  
Rebecca J. Foster

Population assessments of wide-ranging, cryptic, terrestrial mammals rely on camera trap surveys. While camera trapping is a powerful method of detecting presence, it is difficult distinguishing rarity from low detection rate. The margay (Leopardus wiedii) is an example of a species considered rare based on its low detection rates across its range. Although margays have a wide distribution, detection rates with camera traps are universally low; consequently, the species is listed as Near Threatened. Our 12-year camera trap study of margays in protected broadleaf forest in Belize suggests that while margays have low detection rate, they do not seem to be rare, rather that they are difficult to detect with camera traps. We detected a maximum of 187 individuals, all with few or no recaptures over the years (mean = 2.0 captures/individual ± SD 2.1), with two-thirds of individuals detected only once. The few individuals that were recaptured across years exhibited long tenures up to 9 years and were at least 10 years old at their final detection. We detected multiple individuals of both sexes at the same locations during the same survey, suggesting overlapping ranges with non-exclusive territories, providing further evidence of a high-density population. By studying the sparse annual datasets across multiple years, we found evidence of an abundant margay population in the forest of the Cockscomb Basin, which might have been deemed low density and rare, if studied in the short term. We encourage more long-term camera trap studies to assess population status of semi-arboreal carnivore species that have hitherto been considered rare based on low detection rates.


2019 ◽  
Author(s):  
Sadoune Ait Kaci Azzou ◽  
Liam Singer ◽  
Thierry Aebischer ◽  
Madleina Caduff ◽  
Beat Wolf ◽  
...  

SummaryCamera traps and acoustic recording devices are essential tools to quantify the distribution, abundance and behavior of mobile species. Varying detection probabilities among device locations must be accounted for when analyzing such data, which is generally done using occupancy models. We introduce a Bayesian Time-dependent Observation Model for Camera Trap data (Tomcat), suited to estimate relative event densities in space and time. Tomcat allows to learn about the environmental requirements and daily activity patterns of species while accounting for imperfect detection. It further implements a sparse model that deals well will a large number of potentially highly correlated environmental variables. By integrating both spatial and temporal information, we extend the notation of overlap coefficient between species to time and space to study niche partitioning. We illustrate the power of Tomcat through an application to camera trap data of eight sympatrically occurring duiker Cephalophinae species in the savanna - rainforest ecotone in the Central African Republic and show that most species pairs show little overlap. Exceptions are those for which one species is very rare, likely as a result of direct competition.


2020 ◽  
Author(s):  
Thel Lucie ◽  
Chamaillé-Jammes Simon ◽  
Keurinck Léa ◽  
Catala Maxime ◽  
Packer Craig ◽  
...  

AbstractEcologists increasingly rely on camera trap data to estimate a wide range of biological parameters such as occupancy, population abundance or activity patterns. Because of the huge amount of data collected, the assistance of non-scientists is often sought after, but an assessment of the data quality is a prerequisite to their use.We tested whether citizen science data from one of the largest citizen science projects - Snapshot Serengeti - could be used to study breeding phenology, an important life-history trait. In particular, we tested whether the presence of juveniles (less than one or 12 months old) of three ungulate species in the Serengeti: topi Damaliscus jimela, kongoni Alcelaphus buselaphus and Grant’s gazelle Nanger granti could be reliably detected by the “naive” volunteers vs. trained observers. We expected a positive correlation between the proportion of volunteers identifying juveniles and their effective presence within photographs, assessed by the trained observers.We first checked the agreement between the trained observers for age classes and species and found a good agreement between them (Fleiss’ κ > 0.61 for juveniles of less than one and 12 month(s) old), suggesting that morphological criteria can be used successfully to determine age. The relationship between the proportion of volunteers detecting juveniles less than a month old and their actual presence plateaued at 0.45 for Grant’s gazelle and reached 0.70 for topi and 0.56 for kongoni. The same relationships were however much stronger for juveniles younger than 12 months, to the point that their presence was perfectly detected by volunteers for topi and kongoni.Volunteers’ classification allows a rough, moderately accurate, but quick, sorting of photograph sequences with/without juveniles. Obtaining accurate data however appears more difficult. We discuss the limitations of using citizen science camera traps data to study breeding phenology, and the options to improve the detection of juveniles, such as the addition of aging criteria on the online citizen science platforms, or the use of machine learning.


2020 ◽  
Vol 20 (4) ◽  
Author(s):  
Paula Ribeiro Prist ◽  
Guilherme S. T. Garbino ◽  
Fernanda Delborgo Abra ◽  
Thais Pagotto ◽  
Osnir Ormon Giacon

Abstract The water opossum (Chironectes minimus) is a semi-aquatic mammal that is infrequently sampled in Atlantic rainforest areas in Brazil. Here we report on new records of C. minimus in the state of São Paulo, southeastern Brazil, and comment on its behavior and ecology. We placed nine camera traps in culverts and cattle boxes under a highway, between 2017 and 2019. From a total of 6,750 camera-trap-days, we obtained 16 records of C. minimus (0.24 records/100 camera-trap-days) in two cameras placed in culverts over streams. Most of the records were made between May and August, in the dry season and in the first six hours after sunset. The new records are from a highly degraded area with some riparian forests. The records lie approximately 30 km away from the nearest protected area where the species is known to occur. We suggest that C. minimus has some tolerance to degraded habitats, as long as the water bodies and riparian forests are minimally preserved. The new records presented here also fill a distribution gap in western São Paulo state.


2018 ◽  
Vol 40 (1) ◽  
pp. 118 ◽  
Author(s):  
Bronwyn A. Fancourt ◽  
Mark Sweaney ◽  
Don B. Fletcher

Camera traps are being used increasingly for wildlife management and research. When choosing camera models, practitioners often consider camera trigger speed to be one of the most important factors to maximise species detections. However, factors such as detection zone will also influence detection probability. As part of a rabbit eradication program, we performed a pilot study to compare rabbit (Oryctolagus cuniculus) detections using the Reconyx PC900 (faster trigger speed, narrower detection zone) and the Ltl Acorn Ltl-5310A (slower trigger speed, wider detection zone). Contrary to our predictions, the slower-trigger-speed cameras detected rabbits more than twice as often as the faster-trigger-speed cameras, suggesting that the wider detection zone more than compensated for the relatively slower trigger time. We recommend context-specific field trials to ensure cameras are appropriate for the required purpose. Missed detections could lead to incorrect inferences and potentially misdirected management actions.


2019 ◽  
Author(s):  
◽  
Hayder Yousif

[ACCESS RESTRICTED TO THE UNIVERSITY OF MISSOURI AT REQUEST OF AUTHOR.] Camera traps are a popular tool to sample animal populations because they are noninvasive, detect a variety of species, and can record many thousands of animal detections per deployment. Cameras are typically set to take bursts of multiple images for each detection, and are deployed in arrays of dozens or hundreds of sites, often resulting in millions of images per study. The task of converting images to animal detection records from such large image collections is daunting, and made worse by situations that generate copious empty pictures from false triggers (e.g. camera malfunction or moving vegetation) or pictures of humans. We offer the first widely available computer vision tool for processing camera trap images. Our results show that the tool is accurate and results in substantial time savings for processing large image datasets, thus improving our ability to monitor wildlife across large scales with camera traps. In this dissertation, we have developed new image/video processing and computer vision algorithms for efficient and accurate object detection and sequence-level classiffication from natural scene camera-trap images. This work addresses the following five major tasks: (1) Human-animal detection. We develop a fast and accurate scheme for human-animal detection from highly cluttered camera-trap images using joint background modeling and deep learning classification. Specifically, first, We develop an effective background modeling and subtraction scheme to generate region proposals for the foreground objects. We then develop a cross-frame image patch verification to reduce the number of foreground object proposals. Finally, We perform complexity-accuracy analysis of deep convolutional neural networks (DCNN) to develop a fast deep learning classification scheme to classify these region proposals into three categories: human, animals, and background patches. The optimized DCNN is able to maintain high level of accuracy while reducing the computational complexity by 14 times. Our experimental results demonstrate that the proposed method outperforms existing methods on the camera-trap dataset. (2) Object segmentation from natural scene. We first design and train a fast DCNN for animal-human-background object classification, which is used to analyze the input image to generate multi-layer feature maps, representing the responses of different image regions to the animal-human-background classifier. From these feature maps, we construct the so-called deep objectness graph for accurate animal-human object segmentation with graph cut. The segmented object regions from each image in the sequence are then verfied and fused in the temporal domain using background modeling. Our experimental results demonstrate that our proposed method outperforms existing state-of-the-art methods on the camera-trap dataset with highly cluttered natural scenes. (3) DCNN domain background modeling. We replaced the background model with a new more efficient deep learning based model. The input frames are segmented into regions through the deep objectness graph then the region boundaries of the input frames are multiplied by each other to obtain the regions of movement patches. We construct the background representation using the temporal information of the co-located patches. We propose to fuse the subtraction and foreground/background pixel classiffcation of two representation : a) chromaticity and b) deep pixel information. (4) Sequence-level object classiffcation. We proposed a new method for sequence-level video recognition with application to animal species recognition from camera trap images. First, using background modeling and cross-frame patch verification, we developed a scheme to generate candidate object regions or object proposals in the spatiotemporal domain. Second, we develop a dynamic programming optimization approach to identify the best temporal subset of object proposals. Third, we aggregate and fuse the features of these selected object proposals for efficient sequence-level animal species classification.


2020 ◽  
Vol 47 (4) ◽  
pp. 326 ◽  
Author(s):  
Harry A. Moore ◽  
Jacob L. Champney ◽  
Judy A. Dunlop ◽  
Leonie E. Valentine ◽  
Dale G. Nimmo

Abstract ContextEstimating animal abundance often relies on being able to identify individuals; however, this can be challenging, especially when applied to large animals that are difficult to trap and handle. Camera traps have provided a non-invasive alternative by using natural markings to individually identify animals within image data. Although camera traps have been used to individually identify mammals, they are yet to be widely applied to other taxa, such as reptiles. AimsWe assessed the capacity of camera traps to provide images that allow for individual identification of the world’s fourth-largest lizard species, the perentie (Varanus giganteus), and demonstrate other basic morphological and behavioural data that can be gleaned from camera-trap images. MethodsVertically orientated cameras were deployed at 115 sites across a 10000km2 area in north-western Australia for an average of 216 days. We used spot patterning located on the dorsal surface of perenties to identify individuals from camera-trap imagery, with the assistance of freely available spot ID software. We also measured snout-to-vent length (SVL) by using image-analysis software, and collected image time-stamp data to analyse temporal activity patterns. ResultsNinety-two individuals were identified, and individuals were recorded moving distances of up to 1975m. Confidence in identification accuracy was generally high (91%), and estimated SVL measurements varied by an average of 6.7% (min=1.8%, max=21.3%) of individual SVL averages. Larger perenties (SVL of >45cm) were detected mostly between dawn and noon, and in the late afternoon and early evening, whereas small perenties (SVL of <30cm) were rarely recorded in the evening. ConclusionsCamera traps can be used to individually identify large reptiles with unique markings, and can also provide data on movement, morphology and temporal activity. Accounting for uneven substrates under cameras could improve the accuracy of morphological estimates. Given that camera traps struggle to detect small, nocturnal reptiles, further research is required to examine whether cameras miss smaller individuals in the late afternoon and evening. ImplicationsCamera traps are increasingly being used to monitor reptile species. The ability to individually identify animals provides another tool for herpetological research worldwide.


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