scholarly journals Amazonia as the Origin and Diversification Area of Didelphidae (Mammalia: Metatheria), and a Review of the Fossil Record of the Clade

2021 ◽  
Author(s):  
Mariela C. Castro ◽  
Murilo J. Dahur ◽  
Gabriel S. Ferreira
Keyword(s):  
South America ◽  
Amazon Basin ◽  
Parametric Models ◽  
Isthmus Of Panama ◽  
Biogeographic History ◽  
Early Diversification ◽  
Northern Portion ◽  
History Of ◽  
Environmental Events ◽  
Fossil Records

AbstractDidelphidae is the largest New World radiation of marsupials, and is mostly represented by arboreal, small- to medium-sized taxa that inhabit tropical and/or subtropical forests. The group originated and remained isolated in South America for millions of years, until the formation of the Isthmus of Panama. In this study, we present the first reconstruction of the biogeographic history of Didelphidae including all major clades, based on parametric models and stratified analyses over time. We also compiled all the pre-Quaternary fossil records of the group, and contrasted these data to our biogeographic inferences, as well as to major environmental events that occurred in the South American Cenozoic. Our results indicate the relevance of Amazonia in the early diversification of Didelphidae, including the divergence of the major clades traditionally ranked as subfamilies and tribes. Cladogeneses in other areas started in the late Miocene, an interval of intense shifts, especially in the northern portion of Andes and Amazon Basin. Occupation of other areas continued through the Pliocene, but few were only colonized in Quaternary times. The comparison between the biogeographic inference and the fossil records highlights some further steps towards better understanding the spatiotemporal evolution of the clade. Finally, our results stress that the early history of didelphids is obscured by the lack of Paleogene fossils, which are still to be unearthed from low-latitude deposits of South America.

scholarly journals Evolution of Philodendron (Araceae) species along Neotropical biomes

2016 ◽  
Author(s):  
Leticia Loss-Oliveira ◽  
Cassia CMS Sakuragui ◽  
Maria de Lourdes Soares ◽  
Carlos G Schrago
Keyword(s):  
Morphological Diversity ◽  
Neotropical Region ◽  
Last Common Ancestor ◽  
Amazon Forest ◽  
Ancestral Reconstruction ◽  
Biogeographic History ◽  
Early Diversification ◽  
Sister Clade ◽  
History Of ◽  
Wide Geographic Distribution

Philodendron is the second most diverse genus of the Araceae, a tropical monocot family with significant morphological diversity along its wide geographic distribution in the Neotropics. Although evolutionary studies of Philodendron were conducted in recent years, the phylogenetic relationship among its species remains unclear. Additionally, analyses conducted to date suggested the inclusion of all American representatives of a closely related genus, Homalomena, within the Philodendron clade. A thorough evaluation of the phylogeny and timescale of these lineages is thus necessary to elucidate the tempo and mode of evolution of this large Neotropical genus and to unveil the biogeographic history of Philodendron evolution along the Amazonian and Atlantic Rain Forests, as well as open dry forests of South America. To this end, we have estimated the molecular phylogeny for 68 Philodendron species, which consists of the largest sampling assembled to date aiming the study of the evolutionary affinities. We have also performed ancestral reconstruction of species distribution along biomes. Finally, we contrasted these results with the inferred timescale of Philodendron and Homalomena lineage diversification. Our estimates indicate that American Homalomena is the sister clade to Philodendron. The early diversification of Philodendron took place in the Amazon Forest from Early to Middle Miocene, followed by colonization of the Atlantic Forest and the savanna-like landscapes, respectively. Based on the age of the last common ancestor of Philodendron, the species of this genus diversified by rapid radiations, leading to its wide extant distribution in the Neotropical region.

New Late Miocene Dromomerycine Artiodactyl from the Amazon Basin: Implications for Interchange Dynamics

2014 ◽  
Vol 88 (3) ◽  
pp. 434-443 ◽  
Author(s):  
Donald R. Prothero ◽  
Kenneth E. Campbell ◽  
Brian L. Beatty ◽  
Carl D. Frailey
Keyword(s):  
North America ◽  
South America ◽  
Late Miocene ◽  
Amazon Basin ◽  
New Taxon ◽  
Isthmus Of Panama ◽  
Great American Biotic Interchange ◽  
American Immigrant ◽  
Early Late ◽  
Ground Sloths

A new dromomerycine palaeomerycid artiodactyl, Surameryx acrensis new genus new species, from upper Miocene deposits of the Amazon Basin documents the first and only known occurrence of this Northern Hemisphere group in South America. Osteological characters place the new taxon among the earliest known dromomerycine artiodactyls, most similar to Barbouromeryx trigonocorneus, which lived in North America during the early to middle Miocene, 20–16 Ma. Although it has long been assumed that the Great American Biotic Interchange (GABI) began with the closure of the Isthmus of Panama in the late Pliocene, or ca. 3.0–2.5 Ma, the presence of this North American immigrant in Amazonia is further evidence that terrestrial connections between North America and South America through Panama existed as early as the early late Miocene, or ca. 9.5 Ma. This early interchange date was previously indicated by approximately coeval specimens of proboscideans, peccaries, and tapirs in South America and ground sloths in North America. Although palaeomerycids apparently never flourished in South America, proboscideans thrived there until the end of the Pleistocene, and peccaries and tapirs diversified and still live there today.

scholarly journals The systematic relationships and biogeographic history of ornithischian dinosaurs

PeerJ ◽  
2015 ◽  
Vol 3 ◽  
pp. e1523 ◽  
Author(s):  
Clint A. Boyd
Keyword(s):  
North America ◽  
South America ◽  
Wide Distribution ◽  
Sister Taxon ◽  
Evolutionary Patterns ◽  
Biogeographic History ◽  
Early Diversification ◽  
Systematic Relationships ◽  
Patterns And Processes ◽  
Comprehensive Framework

The systematic relationships of taxa traditionally referred to as ‘basal ornithopods’ or ‘hypsilophodontids’ remain poorly resolved since it was discovered that these taxa are not a monophyletic group, but rather a paraphyletic set of neornithischian taxa. Thus, even as the known diversity of these taxa has dramatically increased over the past two decades, our knowledge of their placement relative to each other and the major ornithischian subclades remained incomplete. This study employs the largest phylogenetic dataset yet compiled to assess basal ornithischian relationships (255 characters for 65 species level terminal taxa). The resulting strict consensus tree is the most well-resolved, stratigraphically consistent hypothesis of basal ornithischian relationships yet hypothesized. The only non-iguanodontian ornithopod (=basal ornithopod) recovered in this analysis isHypsilophodon foxii. The majority of former ‘hypsilophodontid’ taxa are recovered within a single clade (Parksosauridae) that is situated as the sister-taxon to Cerapoda. The Parksosauridae is divided between two subclades, the Orodrominae and the Thescelosaurinae. This study does not recover a clade consisting of the Asian taxaChangchunsaurus,Haya, andJeholosaurus(=Jeholosauridae). Rather, the former two taxa are recovered as basal members of Thescelosaurinae, while the latter taxon is recovered in a clade withYueosaurusnear the base of Neornithischia.The endemic South American clade Elasmaria is recovered within the Thescelosaurinae as the sister taxon toThescelosaurus. This study supports the origination of Dinosauria and the early diversification of Ornithischia within Gondwana. Neornithischia first arose in Africa by the Early Jurassic before dispersing to Asia before the late Middle Jurassic, where much of the diversification among non-cerapodan neornithischians occurred. Under the simplest scenario the Parksosauridae originated in North America, with at least two later dispersals to Asia and one to South America. However, when ghost lineages are considered, an alternate dispersal hypothesis has thescelosaurines dispersing from Asia into South America (via North America) during the Early Cretaceous, then back into North America in the latest Cretaceous. The latter hypothesis may explain the dominance of orodromine taxa prior to the Maastrichtian in North America and the sudden appearance and wide distribution of thescelosaurines in North America beginning in the early Maastrichtian. While the diversity of parksosaurids has greatly increased over the last fifteen years, a ghost lineage of over 40 myr is present between the base of Parksosauridae and Cerapoda, indicating that much of the early history and diversity of this clade is yet to be discovered. This new phylogenetic hypothesis provides a comprehensive framework for testing further hypotheses regarding evolutionary patterns and processes within Ornithischia.

scholarly journals Recent and Rapid Radiation of the Highly Endangered Harlequin Frogs (Atelopus) into Central America Inferred from Mitochondrial DNA Sequences

Diversity ◽  
2020 ◽  
Vol 12 (9) ◽  
pp. 360
Author(s):  
Juan Ramírez ◽  
César Jaramillo ◽  
Erik Lindquist ◽  
Andrew Crawford ◽  
Roberto Ibáñez
Keyword(s):  
Mitochondrial Dna ◽  
South America ◽  
Central America ◽  
Dna Sequences ◽  
Central American ◽  
Tree Model ◽  
South American Species ◽  
Biogeographic History ◽  
Museum Samples ◽  
History Of

Populations of amphibians are experiencing severe declines worldwide. One group with the most catastrophic declines is the Neotropical genus Atelopus (Anura: Bufonidae). Many species of Atelopus have not been seen for decades and all eight Central American species are considered “Critically Endangered”, three of them very likely extinct. Nonetheless, the taxonomy, phylogeny, and biogeographic history of Central American Atelopus are still poorly known. In this study, the phylogenetic relationships among seven of the eight described species in Central America were inferred based on mitochondrial DNA sequences from 103 individuals, including decades-old museum samples and two likely extinct species, plus ten South American species. Among Central American samples, we discovered two candidate species that should be incorporated into conservation programs. Phylogenetic inference revealed a ladderized topology, placing species geographically furthest from South America more nested in the tree. Model-based ancestral area estimation supported either one or two colonization events from South America. Relaxed-clock analysis of divergence times indicated that Atelopus colonized Central America prior to 4 million years ago (Ma), supporting a slightly older than traditional date for the closure of the Isthmus. This study highlights the invaluable role of museum collections in documenting past biodiversity, and these results could guide future conservation efforts. An abstract in Spanish (Resumen) is available as supplementary material.

scholarly journals An exploration of the complex biogeographical history of the Neotropical banner-wing damselflies (Odonata: Polythoridae)

2020 ◽  
Author(s):  
Melissa Sanchez Herrera ◽  
Christopher Beatty ◽  
Renato Nunes ◽  
Camilo Salazar ◽  
Jessica L Ware
Keyword(s):  
Amazon Basin ◽  
Late Eocene ◽  
Recent Common Ancestor ◽  
Northern Andes ◽  
Intrinsic Factors ◽  
Most Recent Common Ancestor ◽  
Early Diversification ◽  
Dynamic Landscape ◽  
History Of ◽  
Spatial Diversification

Abstract Background: The New World Tropics has experienced a dynamic landscape across evolutionary history and harbors a high diversity of flora and fauna. While there are some studies addressing diversification in Neotropical vertebrates and plants, there is still a lack of knowledge in arthropods. Here we examine temporal and spatial diversification patterns in the damselfly family Polythoridae, which comprises seven genera with a total of 58 species distributed across much of Central and South America. Results Our time-calibrated phylogeny for 48 species suggests that this family radiated during the late Eocene (~33 Ma), diversifying during the Miocene. As with other neotropical groups, the Most Recent Common Ancestor (MRCA) of most of the Polythoridae genera has a primary origin in the Northern Andes though the MRCA of at least one genus may have appeared in the Amazon Basin. Our molecular clock suggests correlations with some major geographical events, and our biogeographical modeling (with BioGeoBEARS and RASP) found a significant influence of the formation of the Pebas and Acre systems on the early diversification of these damselflies, though evidence for the influence of the rise of the different Andean ranges was mixed. Diversification rates have been uniform in all genera except one— Polythore —where a significant increase in the late Pliocene (~3 mya) may have been influenced by recent Andean uplift. Conclusion The biogeographical models implemented here suggest that the Pebas and Acre Systems were significant geological events associated with the diversification of this damselfly family; while diversification in the tree shows some correlation with mountain building events, it is possible that other abiotic and biotic changes during our study period have influenced diversification as well. The high diversification rate observed in Polythore could be explained by the late uplift of the Northern Andes. However, it is possible that other intrinsic factors like sexual and natural selection acting on color patterns could be involved in the diversification of this genus.

scholarly journals Phylogenetic relationships and biogeographical history of the large extinct European testudinids

2015 ◽  
Author(s):  
Evangelos Vlachos ◽  
Adán Pérez-García ◽  
Márton Rabi
Keyword(s):  
Phylogenetic Relationships ◽  
Evolutionary History ◽  
General Scheme ◽  
Morphological Characters ◽  
Limited Attention ◽  
Biogeographic History ◽  
Early Diversification ◽  
Open Questions ◽  
History Of ◽  
In The Beginning

Background. Large-sized testudinids had a long evolutionary history in Europe during the last 50 million years before becoming extinct in the beginning of the Pleistocene. Despite a 150-year long history in research and a decent fossil record, the European large testudinids have received limited attention so far. Methods. New excavations, descriptions of new specimens from Greece, Spain and Germany, revisions of previously published European taxa and comparative studies with extant testudinids now provide a major advancement in understanding the anatomy and evolutionary history of these turtles. This contribution aims to provide an updated summary of the accumulated knowledge on European large tortoises and to explore in detail their phylogenetic relationships in a global context (including small-sized extinct and extant taxa). The phylogenetic analysis is based on a new character/taxon matrix of morphological characters. Parsimony analysis was performed both with and without molecular backbone constraints. Results. We describe new material of large testudinids from Greece, Spain and Germany and revise most of the available material that has been previously published. Our morphology-based results are promising since they are consistent with recent molecular studies in identifying large testudinids traditionally referred to the Geochelone complex as polyphyletic. Furthermore, we were able to reproduce the molecular phylogeny of Mediterranean tortoises (Testudona). Discussion. The phylogenetic framework presented here allows addressing several open questions of the history of testudinids. First of all, it hints to a more complex biogeographic history of European testudinids than previously recognized. Although the early Paleogene history of testudinids cannot be accurately traced at the moment it seems probable that, besides Asia and North America, Europe also played a major role in the early diversification of Testudinidae. We demonstrate that large European testudinids do not form a monophyletic lineage. The widely recognized genus Cheirogaster should only include the Eocene type species, and exclude other large Paleogene or giant Neogene taxa so far known. Our analysis reveals that large size evolved independently in several clades and in several continents during warmer parts of the Cenozoic. Besides this general scheme other factors might have played a role regionally (e.g. changes in vegetation, island isolation).

scholarly journals Diversity and paleoenvironmental implications of an elasmobranch assemblage from the Oligocene–Miocene boundary of Ecuador

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e9051
Author(s):  
Jorge D. Carrillo-Briceño ◽  
Jaime A. Villafaña ◽  
Carlos De Gracia ◽  
F. Fernando Flores-Alcívar ◽  
René Kindlimann ◽  
...  
Keyword(s):  
South America ◽  
Evolutionary History ◽  
New Records ◽  
Tropical America ◽  
History Of ◽  
Fossil Site ◽  
The Rich ◽  
Fossil Records ◽  
Santa Elena ◽  
Open Shelf

The occurrence and diversity of elasmobranchs from the Oligocene–Miocene boundary from Tropical America is poorly known in comparison with the paleodiversity from younger Neogene intervals of the region. Here we describe a new elasmobranch assemblage from the rich fossil site of Montañita-Olón (Dos Bocas Formation, Santa Elena, Ecuador), where other vertebrates have already been described: for example, sea turtles and cetaceans. We report a total of 27 elasmobranch taxa, 19 of which are new fossil records for Ecuador, 10 new records for the Central Eastern Pacific and four new records for South America. Additionally, in order to reconstruct the environment where these marine remains were deposited, we performed abundance, paleobathymetric and habitat preference analyses, concluding that they were likely deposited in an outer neritic (open shelf) environment. The study of Oligocene and early Miocene marine elasmobranchs faunas in Tropical America is key to addressing the issues in the evolutionary history of this group.

scholarly journals Evolution of Philodendron (Araceae) species along Neotropical biomes

2016 ◽  
Author(s):  
Leticia Loss-Oliveira ◽  
Cassia CMS Sakuragui ◽  
Maria de Lourdes Soares ◽  
Carlos G Schrago
Keyword(s):  
Morphological Diversity ◽  
Neotropical Region ◽  
Last Common Ancestor ◽  
Amazon Forest ◽  
Ancestral Reconstruction ◽  
Biogeographic History ◽  
Early Diversification ◽  
Sister Clade ◽  
History Of ◽  
Wide Geographic Distribution

Philodendron is the second most diverse genus of the Araceae, a tropical monocot family with significant morphological diversity along its wide geographic distribution in the Neotropics. Although evolutionary studies of Philodendron were conducted in recent years, the phylogenetic relationship among its species remains unclear. Additionally, analyses conducted to date suggested the inclusion of all American representatives of a closely related genus, Homalomena, within the Philodendron clade. A thorough evaluation of the phylogeny and timescale of these lineages is thus necessary to elucidate the tempo and mode of evolution of this large Neotropical genus and to unveil the biogeographic history of Philodendron evolution along the Amazonian and Atlantic Rain Forests, as well as open dry forests of South America. To this end, we have estimated the molecular phylogeny for 68 Philodendron species, which consists of the largest sampling assembled to date aiming the study of the evolutionary affinities. We have also performed ancestral reconstruction of species distribution along biomes. Finally, we contrasted these results with the inferred timescale of Philodendron and Homalomena lineage diversification. Our estimates indicate that American Homalomena is the sister clade to Philodendron. The early diversification of Philodendron took place in the Amazon Forest from Early to Middle Miocene, followed by colonization of the Atlantic Forest and the savanna-like landscapes, respectively. Based on the age of the last common ancestor of Philodendron, the species of this genus diversified by rapid radiations, leading to its wide extant distribution in the Neotropical region.

scholarly journals The Origins of Coca: Museum Genomics Reveals Multiple Independent Domestications from Progenitor Erythroxylum gracilipes

2020 ◽  
Vol 70 (1) ◽  
pp. 1-13
Author(s):  
Dawson M White ◽  
Jen-Pan Huang ◽  
Orlando Adolfo Jara-Muñoz ◽  
Santiago MadriñáN ◽  
Richard H Ree ◽  
...  
Keyword(s):  
South America ◽  
Evolutionary History ◽  
Amazon Basin ◽  
Plant Domestication ◽  
Target Sequence ◽  
South American ◽  
Sequence Capture ◽  
Domestication Event ◽  
Geographic Origins ◽  
History Of

Abstract Coca is the natural source of cocaine as well as a sacred and medicinal plant farmed by South American Amerindians and mestizos. The coca crop comprises four closely related varieties classified into two species (Amazonian and Huánuco varieties within Erythroxylum coca Lam., and Colombian and Trujillo varieties within Erythroxylum novogranatense (D. Morris) Hieron.) but our understanding of the domestication and evolutionary history of these taxa is nominal. In this study, we use genomic data from natural history collections to estimate the geographic origins and genetic diversity of this economically and culturally important crop in the context of its wild relatives. Our phylogeographic analyses clearly demonstrate the four varieties of coca comprise two or three exclusive groups nested within the diverse lineages of the widespread, wild species Erythroxylum gracilipes; establishing a new and robust hypothesis of domestication wherein coca originated two or three times from this wild progenitor. The Colombian and Trujillo coca varieties are descended from a single, ancient domestication event in northwestern South America. Huánuco coca was domesticated more recently, possibly in southeastern Peru. Amazonian coca either shares a common domesticated ancestor with Huánuco coca, or it was the product of a third and most recent independent domestication event in the western Amazon basin. This chronology of coca domestication reveals different Holocene peoples in South America were able to independently transform the same natural resource to serve their needs; in this case, a workaday stimulant. [Erythroxylum; Erythroxylaceae; Holocene; Museomics; Neotropics; phylogeography; plant domestication; target-sequence capture.]

scholarly journals From Patagonia to Indonesia: plant fossils highlight West Gondwanan legacy in the Malesian flora

2021 ◽  
Vol 47 (3) ◽  
pp. 81-82
Author(s):  
Peter Wilf
Keyword(s):  
South America ◽  
New World ◽  
New Guinea ◽  
Tropical Rainforests ◽  
Living Fossil ◽  
Plant Fossils ◽  
Biogeographic History ◽  
West Sumatra ◽  
History Of

Rainforests with the chinquapin Castanopsis and the yellowwood conifer Dacrycarpus occur today throughout Indonesia and the larger Malesian ecoregion, but they represent, in part, a history of survival stretching tens of millions of years and thousands of kilometers to the palaeo-Antarctic. Unlike New World and African tropical rainforests, the Malesian flora’s history is closely tied to tectonic introductions from exotic terranes, and thus, much palaeobotanical data about the origins of the Malesian rainforest comes from those terranes. For example, South America, Antarctica, and Australia remained adjacent until the Eocene final separation of Gondwana, and warm climates promoted high-latitude dispersals among those landmasses. Australia’s subsequent northward movement led to the late Oligocene Sahul-Sunda collision and the uplift of New Guinea, allowing the introductions into Malesia of survivor taxa that were once widespread in mesic Gondwanan rainforests. In Patagonian Argentina, the prolific Laguna del Hunco (52.2 Ma) site preserves abundant and well-preserved fossils of an unexpectedly large number of lineages whose living relatives characteristically associate in perhumid, lower montane “oak-laurel” rainforests of Malesia, especially in New Guinea. These taxa include the angiosperms Castanopsis (Fagaceae), Gymnostoma (rhu, Casuarinaceae), Alatonucula (extinct engelhardioid Juglandaceae), Eucalyptus (gums, Myrtaceae), Ceratopetalum (coachwood, Cunoniaceae), Lauraceae (laurel family), and Ripogonum (supplejack, Ripogonaceae); conifers in Cupressaceae (cypress family: Papuacedrus), Araucariaceae (dammars and relatives: Agathis and Araucaria Section Eutacta), and Podocarpaceae (yellowwoods: Dacrycarpus, Podocarpus, and a species similar to Phyllocladus); and the fern Todea (king fern, Osmundaceae). Many of these records are the only occurrences of the respective taxa in South America, living or fossil, vastly extending their past ranges and thus the biogeographic history of part of the Malesian mountain flora. The living-fossil taxa inhabit, and several dominate, critical watershed areas of high endemism and biodiversity in Malesia’s endangered tropical-montane rainforests. In Malesia itself, there have been very few Cenozoic palaeobotanical investigations for about a century or more. To remedy this situation and improve understanding of the evolution of the Malesian flora in situ, we have begun palaeobotanical fieldwork in collaboration with Professor Yahdi Zaim and ITB, along with international colleagues. So far, we have discovered several promising new fossil sites in the Eocene-Oligocene of West Sumatra (Sangkarewang and Sawahlunto formations) and South Kalimantan (Tanjung Formation), and I will report preliminary observations.

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