Genome sequence of a multidrug-resistant Campylobacter coli strain isolated from a newborn with severe diarrhea in Lebanon

2022 ◽  
Author(s):  
Fatima Bachir Halimeh ◽  
Rayane Rafei ◽  
Seydina M. Diene ◽  
Marwan Osman ◽  
Issmat I. Kassem ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Multidrug Resistant ◽  
Coli Strain ◽  
Campylobacter Coli ◽  
Severe Diarrhea

scholarly journals Whole-Genome Sequence of Multidrug-Resistant Campylobacter coli Strain COL B1-266, Isolated from the Colombian Poultry Chain

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Johan F. Bernal ◽  
Pilar Donado-Godoy ◽  
Alejandra Arévalo ◽  
Carolina Duarte ◽  
María E. Realpe ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Multidrug Resistant ◽  
Coli Strain ◽  
Whole Genome Sequence ◽  
Campylobacter Coli ◽  
Whole Genome ◽  
Genome Sequences ◽  
Food Borne ◽  
Antimicrobial Resistance Genes ◽  
Food Borne Illness

Campylobacter coli is considered one of the main causes of food-borne illness worldwide. We report here the whole-genome sequence of multidrug-resistant Campylobacter coli strain COL B1-266, isolated from the Colombian poultry chain. The genome sequences encode genes for a variety of antimicrobial resistance genes, including aminoglycosides, β-lactams, lincosamides, fluoroquinolones, and tetracyclines.

scholarly journals Complete Circular Genome Sequence of a Multidrug-Resistant Escherichia coli Strain from Cuba Obtained with Nanopore and Illumina Hybrid Assembly

2019 ◽  
Vol 8 (48) ◽  
Author(s):  
Rosa Elena Hernández-Fillor ◽  
Michael Brilhante ◽  
Ivette Espinosa ◽  
Vincent Perreten
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Antibiotic Resistance Genes ◽  
Generation Cephalosporin ◽  
Multidrug Resistant ◽  
Coli Strain ◽  
Hybrid Assembly ◽  
Content Type ◽  
Long Reads ◽  
Cephalosporin Resistance

The complete genome sequence of a multidrug-resistant Escherichia coli strain isolated from a healthy pig in Cuba was determined using short and long reads. This strain carried four plasmids, including a 42,683-kb IncX1 plasmid, which contains the third-generation cephalosporin resistance gene bla CTX-M-32 together with other disinfectant and antibiotic resistance genes.

scholarly journals Draft Genome Sequence of a Pathogenic O86:H25 Sequence Type 57 Escherichia coli Strain Isolated from Poultry and Carrying 12 Acquired Antibiotic Resistance Genes

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Daniela Jones-Dias ◽  
Vera Manageiro ◽  
Daniel Ataíde Sampaio ◽  
Luís Vieira ◽  
Manuela Caniça
Keyword(s):  
Escherichia Coli ◽  
Antibiotic Resistance ◽  
Genome Sequence ◽  
Draft Genome ◽  
Antibiotic Resistance Genes ◽  
Multidrug Resistant ◽  
Coli Strain ◽  
Draft Genome Sequence ◽  
E Coli ◽  
Acquired Antibiotic Resistance

Escherichia coli is a commensal bacterium that is frequently associated with multidrug-resistant zoonotic and foodborne infections. Here, we report the 5.6-Mbp draft genome sequence of an E. coli recovered from poultry, which encodes multiple acquired antibiotic resistance determinants, virulence factors, pathogenicity determinants, and mobile genetic elements.

scholarly journals Complete genome sequence of multidrug-resistant avian pathogenic Escherichia coli strain APEC-O2-MS1170

2020 ◽  
Vol 23 ◽  
pp. 401-403
Author(s):  
Tianmin Li ◽  
Claudia D. Castañeda ◽  
Mark A. Arick ◽  
Chuan-Yu Hsu ◽  
Aaron S. Kiess ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Multidrug Resistant ◽  
Coli Strain ◽  
Avian Pathogenic Escherichia Coli ◽  
Pathogenic Escherichia Coli

scholarly journals Diarrhea in an infant due to Shigella flexneri 1 carrying multiple cephalosporinase-encoding genes

Gut Pathogens ◽  
2021 ◽  
Vol 13 (1) ◽  
Author(s):  
M. John Albert ◽  
Prashant Purohit ◽  
Laurent Poirel ◽  
Glen Carter ◽  
Dieter Bulach
Keyword(s):  
Shigella Flexneri ◽  
Multidrug Resistant ◽  
Stool Culture ◽  
Whole Genome Sequence ◽  
Watery Diarrhea ◽  
Severe Diarrhea ◽  
Amoxicillin Clavulanic Acid ◽  
One Year ◽  
Multiple Resistance Genes ◽  
Encoding Genes

Abstract Background Infections caused by multidrug-resistant shigellae resistant to broad-spectrum cephalosporins are becoming more prevalent in the Middle East. We report a case of severe diarrhea due to a multiresistant Shigella flexneri 1 strain carrying four different ß-lactamase genes. Case presentation A one-year-old Syrian infant presented with severe acute diarrhea, vomiting and dehydration. She did not respond to empirical treatment with amoxicillin-clavulanic acid followed by cefotaxime. Later, stool culture revealed S. flexneri 1 resistant to both these drugs. The patient was successfully treated with meropenem to which S. flexneri 1 was susceptible. The isolate was resistant to eight classes of antibiotics, and the whole genome sequence (WGS) identified four ß-lactamase genes (blaCTX-M-15, blaEC-8, blaOXA-1, and blaTEM-1) along with genes mediating resistance to seven other antibiotic classes. The WGS also identified several virulence genes including senA that encodes ShET-2 which induces watery diarrhea. Phylogenetically, the isolate was closely related to isolates from South Asia. Conclusions This report highlights the emergence of extremely resistant Shigella that has acquired multiple resistance genes to cephalosporins rendering these drugs ineffective.

scholarly journals Draft Genome Sequence of Neisseria gonorrhoeae Sequence Type 1407, a Multidrug-Resistant Clinical Isolate

2015 ◽  
Vol 3 (4) ◽  
Author(s):  
A. Anselmo ◽  
A. Ciammaruconi ◽  
A. Carannante ◽  
A. Neri ◽  
C. Fazio ◽  
...  
Keyword(s):  
Neisseria Gonorrhoeae ◽  
Clinical Isolate ◽  
Genome Sequence ◽  
Draft Genome ◽  
Multidrug Resistant ◽  
Sequence Type ◽  
Draft Genome Sequence

scholarly journals Draft Genome Sequence of Streptococcus agalactiae Serotype Ia Strain M19, a Multidrug-Resistant Isolate from a Cow with Bovine Mastitis

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Feng Yang ◽  
Hongsheng Li ◽  
Shidong Zhang ◽  
Xurong Wang
Keyword(s):  
Genome Sequence ◽  
Streptococcus Agalactiae ◽  
Draft Genome ◽  
Bovine Mastitis ◽  
Multidrug Resistant ◽  
Draft Genome Sequence ◽  
Resistant Isolate ◽  
Draft Sequence ◽  
Autonomous Region ◽  
Ningxia Hui Autonomous Region

Streptococcus agalactiae is a major contagious pathogen causing bovine mastitis worldwide. We report here the draft sequence of S. agalactiae Ia strain M19, a multidrug-resistant isolate from a bovine mastitis case in Ningxia Hui autonomous region, China.

Urban wastewater disinfection for agricultural reuse: effect of solar driven AOPs in the inactivation of a multidrug resistant E. coli strain

2015 ◽  
Vol 178 ◽  
pp. 65-73 ◽  
Author(s):  
Giovanna Ferro ◽  
Antonino Fiorentino ◽  
María Castro Alferez ◽  
M. Inmaculada Polo-López ◽  
Luigi Rizzo ◽  
...  
Keyword(s):  
Multidrug Resistant ◽  
Coli Strain ◽  
Urban Wastewater ◽  
E Coli ◽  
Wastewater Disinfection
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