scholarly journals Complete Circular Genome Sequence of a Multidrug-Resistant Escherichia coli Strain from Cuba Obtained with Nanopore and Illumina Hybrid Assembly

2019 ◽  
Vol 8 (48) ◽  
Author(s):  
Rosa Elena Hernández-Fillor ◽  
Michael Brilhante ◽  
Ivette Espinosa ◽  
Vincent Perreten
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Antibiotic Resistance Genes ◽  
Generation Cephalosporin ◽  
Multidrug Resistant ◽  
Coli Strain ◽  
Hybrid Assembly ◽  
Content Type ◽  
Long Reads ◽  
Cephalosporin Resistance

The complete genome sequence of a multidrug-resistant Escherichia coli strain isolated from a healthy pig in Cuba was determined using short and long reads. This strain carried four plasmids, including a 42,683-kb IncX1 plasmid, which contains the third-generation cephalosporin resistance gene bla CTX-M-32 together with other disinfectant and antibiotic resistance genes.

scholarly journals Draft Genome Sequence of Multidrug-Resistant Escherichia coli NIVEDI-P44, Isolated from a Chicken Fecal Sample in Northeast India

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Rituparna Tewari ◽  
Susweta Das Mitra ◽  
Sangita Das ◽  
Sudhir Jadhao ◽  
Gayatri Mishra ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Fecal Sample ◽  
Draft Genome ◽  
Antibiotic Resistance Genes ◽  
Multidrug Resistant ◽  
Northeast India ◽  
Draft Genome Sequence ◽  
Multiple Antibiotic Resistance ◽  
Content Type

ABSTRACT We report here the draft genome sequence of a multidrug-resistant Escherichia coli strain (NIVEDI-P44) isolated from a chicken fecal sample. The estimated genome size is 4.76 Mb, with a G+C content of 50.65%. The genome harbors multiple antibiotic resistance genes, bla DHA-1 , mph (A), strA , strB , dfrA14 , sul-2 , tet (A), and qnrS1 .

scholarly journals Draft Genome Sequence of a Pathogenic O86:H25 Sequence Type 57 Escherichia coli Strain Isolated from Poultry and Carrying 12 Acquired Antibiotic Resistance Genes

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Daniela Jones-Dias ◽  
Vera Manageiro ◽  
Daniel Ataíde Sampaio ◽  
Luís Vieira ◽  
Manuela Caniça
Keyword(s):  
Escherichia Coli ◽  
Antibiotic Resistance ◽  
Genome Sequence ◽  
Draft Genome ◽  
Antibiotic Resistance Genes ◽  
Multidrug Resistant ◽  
Coli Strain ◽  
Draft Genome Sequence ◽  
E Coli ◽  
Acquired Antibiotic Resistance

Escherichia coli is a commensal bacterium that is frequently associated with multidrug-resistant zoonotic and foodborne infections. Here, we report the 5.6-Mbp draft genome sequence of an E. coli recovered from poultry, which encodes multiple acquired antibiotic resistance determinants, virulence factors, pathogenicity determinants, and mobile genetic elements.

scholarly journals Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies

2021 ◽  
Vol 10 (4) ◽  
Author(s):  
Håkon Kaspersen ◽  
Thomas H. A. Haverkamp ◽  
Hanna Karin Ilag ◽  
Øivind Øines ◽  
Camilla Sekse ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Complete Genome ◽  
Flow Cell ◽  
Hybrid Assembly ◽  
Genome Sequences ◽  
Content Type ◽  
Short Reads ◽  
Long Reads ◽  
Long Read ◽  
Hybrid Assemblies

ABSTRACT In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.

scholarly journals Draft Genome Sequence of the First NDM-4-Producing Escherichia coli Strain (AK1), Isolated from Sewage Water of a North Indian Hospital

2017 ◽  
Vol 5 (50) ◽  
Author(s):  
Asad U. Khan ◽  
Ayesha Z. Beg ◽  
Praveen K. Verma
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Draft Genome ◽  
Sewage Water ◽  
Coli Strain ◽  
Draft Genome Sequence ◽  
Content Type

ABSTRACT We report here the draft genome sequence of the first isolated NDM-4-producing Escherichia coli strain, isolated from sewage water at a North Indian hospital. The genome has an assembly size of 5,076,053 bp, arranged in 129 contigs, with 5,271 genes and a G+C content of 50.47%.

scholarly journals Draft Genome Sequence of a Canine Uropathogenic Escherichia coli Strain Isolated in New Zealand

2019 ◽  
Vol 8 (10) ◽  
Author(s):  
Vuong V. H. Le ◽  
Ian Bruce ◽  
Patrick J. Biggs ◽  
Jasna Rakonjac
Keyword(s):  
Escherichia Coli ◽  
New Zealand ◽  
Genome Sequence ◽  
Draft Genome ◽  
Coli Strain ◽  
Uropathogenic Escherichia Coli ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Tract Infections ◽  
Human Infections

Escherichia coli P50 is a canine uropathogenic isolate sampled in the Wellington region of New Zealand. We report the draft genome sequence of this isolate, which contains characteristic virulence genes for urinary tract infections and is predicted to be capable of causing human infections.

scholarly journals Complete Genome Sequence of a Carbapenem-Resistant Escherichia coli Isolate with blaNDM-5 from a Dog in the United States

2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Gregory H. Tyson ◽  
Cong Li ◽  
Olgica Ceric ◽  
Renate Reimschuessel ◽  
Stephen Cole ◽  
...  
Keyword(s):  
United States ◽  
Escherichia Coli ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Carbapenem Resistance ◽  
The United States ◽  
Multidrug Resistant ◽  
Content Type ◽  
E Coli

The carbapenem resistance gene bla NDM-5 was identified in an Escherichia coli strain isolated from a dog. We report here the complete genome sequence of this E. coli strain; the bla NDM-5 gene was present on a large IncFII multidrug-resistant plasmid. This is the first bla NDM-5-carrying E. coli strain from an animal in the United States.

scholarly journals Whole-Genome Sequence of Salmonella enterica subsp. enterica Serovar Typhimurium Strain WG49 and Escherichia coli Strain WG5 Used in South Africa for Phage Detection in Water Samples

2018 ◽  
Vol 6 (26) ◽  
Author(s):  
L. Bothma ◽  
D. Gonzalez-Ibeas ◽  
C. Mienie ◽  
C. C. Bezuidenhout ◽  
R. Adeleke
Keyword(s):  
Escherichia Coli ◽  
South Africa ◽  
Genome Sequence ◽  
Water Samples ◽  
Salmonella Enterica ◽  
Coli Strain ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Serovar Typhimurium

Salmonella enterica subsp. enterica serovar Typhimurium WG49 is widely used for enumeration of F-specific RNA (F-RNA) coliphages in water.

scholarly journals Biochemical Analysis of Metallo-β-Lactamase NDM-3 from a Multidrug-Resistant Escherichia coli Strain Isolated in Japan

2014 ◽  
Vol 58 (6) ◽  
pp. 3538-3540 ◽  
Author(s):  
Tatsuya Tada ◽  
Tohru Miyoshi-Akiyama ◽  
Kayo Shimada ◽  
Teruo Kirikae
Keyword(s):  
Escherichia Coli ◽  
Biochemical Analysis ◽  
Multidrug Resistant ◽  
Coli Strain ◽  
Enzymatic Activities ◽  
New Delhi ◽  
Content Type ◽  
Genetic Context

ABSTRACTNew Delhi metallo-β-lactamase-3 (NDM-3) was identified in a multidrug-resistantEscherichia coliisolate, NCGM77, obtained from the feces of a patient in Japan. The enzymatic activities of NDM-3 against β-lactams were similar to those of NDM-1, although NDM-3 showed slightly lowerkcat/Kmratios for all the β-lactams tested except for doripenem. The genetic context forblaNDM-3wastnpA-blaNDM-3-bleMBL-trpF-dsbC-tnpA-sulI-qacEdeltaI-aadA2-dfrA1, which was present on an approximately 250-kb plasmid.

scholarly journals Genome Sequence of Enterotoxigenic Escherichia coli Strain FMU073332

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Zeus Saldaña-Ahuactzi ◽  
Ariadnna Cruz-Córdova ◽  
Gerardo E. Rodea ◽  
Helena Porta ◽  
Armando Navarro-Ocaña ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Coli Strain ◽  
Enterotoxigenic Escherichia Coli ◽  
Content Type ◽  
Etec Strain ◽  
Diarrheal Illness

ABSTRACT Enterotoxigenic Escherichia coli (ETEC) is an important cause of bacterial diarrheal illness, affecting practically every population worldwide, and was estimated to cause 120,800 deaths in 2010. Here, we report the genome sequence of ETEC strain FMU073332, isolated from a 25-month-old girl from Tlaltizapán, Morelos, México.

scholarly journals Fluoroquinolone and Third-Generation-Cephalosporin Resistance among Hospitalized Patients with Urinary Tract Infections Due to Escherichia coli: Do Rates Vary by Hospital Characteristics and Geographic Region?

2016 ◽  
Vol 60 (5) ◽  
pp. 3170-3173 ◽  
Author(s):  
Monique R. Bidell ◽  
Melissa Palchak ◽  
John Mohr ◽  
Thomas P. Lodise
Keyword(s):  
Escherichia Coli ◽  
Urinary Tract ◽  
Generation Cephalosporin ◽  
Hospitalized Patients ◽  
Third Generation ◽  
Content Type ◽  
Cephalosporin Resistance ◽  
Tract Infections ◽  
Resistance Rates ◽  
Hospital Characteristics

ABSTRACTThis analysis of nearly 10,000 hospital-associated urinary tract infection (UTI) episodes due toEscherichia colishowed that fluoroquinolone and third-generation-cephalosporin resistance rates were 34.5% and 8.6%, respectively; the rate of concurrent resistance to both agents was 7.3%. Fluoroquinolone resistance rates exceeded 25% regardless of geographic location or hospital characteristics. The findings suggest that fluoroquinolones should be reserved and third-generation cephalosporins be used with caution as empirical agents for hospitalized patients with UTIs due toE. coli.

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