In this study, the effects of exogenously applied salicylic acid (0.5 and 5 mM SA) on the rates of photosystem II (PSII) activity was analysed in 4-week-old barley (<em>Hordeum vulgare‘</em>Bahman’ ) seedlings using chlorophyll (Chl) <em>a</em> fluorescence transient (<em>OJIP</em>) measurements. No evident changes in Chl and carotenoid contents as well as chlorophyll fluorescence transient curves were observed in either of the studied concentrations after 24 h of SA application. After 5 d, low SA concentration (0.5 mM) increased PSII activity, Chl <em>b</em> and carotenoid contents in barley seedlings. In contrary, 5 days after 5 mM SA treatment, the maximal quantum efficiency of PSII (<em>F</em><sub>v</sub>/<em>F</em><sub>m</sub>) and the Performance Index (PI<sub>ABS</sub>), as an indicator of PSII structure and functioning, were significantly decreased. This lower <em>F</em><sub>v</sub>/<em>F</em><sub>m</sub> and PI<sub>ABS</sub> coupled with lower levels of Chl <em>b</em> and carotenoids, and lower values of photosynthetic electron transport chain components including the electron transport flux (<em>φ</em>E<sub>o</sub>) and the inferred oxygen evolving complex activity (<em>F</em><sub>v</sub>/<em>F</em><sub>o</sub>). By monitoring the chlorophyll <em>a</em> fluorescence rise kinetics, from the initial “<em>O</em>” level to the “<em>P</em>” (the peak) level, a dramatic increase in “<em>OJ</em>” phase was detected, which coincides with an increased photo-reduction of Q<sub>A</sub> as a result of blockage of electron flow. This study provided the evidence that the high concentration of SA induced damage to different sites of the PSII.