scholarly journals Mitigate SIR epidemic spreading via contact blocking in temporal networks

2022 ◽  
Vol 7 (1) ◽  
Author(s):  
Shilun Zhang ◽  
Xunyi Zhao ◽  
Huijuan Wang

AbstractProgress has been made in how to suppress epidemic spreading on temporal networks via blocking all contacts of targeted nodes or node pairs. In this work, we develop contact blocking strategies that remove a fraction of contacts from a temporal (time evolving) human contact network to mitigate the spread of a Susceptible-Infected-Recovered epidemic. We define the probability that a contact c(i, j, t) is removed as a function of a given centrality metric of the corresponding link l(i, j) in the aggregated network and the time t of the contact. The aggregated network captures the number of contacts between each node pair. A set of 12 link centrality metrics have been proposed and each centrality metric leads to a unique contact removal strategy. These strategies together with a baseline strategy (random removal) are evaluated in empirical contact networks via the average prevalence, the peak prevalence and the time to reach the peak prevalence. We find that the epidemic spreading can be mitigated the best when contacts between node pairs that have fewer contacts and early contacts are more likely to be removed. A strategy tends to perform better when the average number contacts removed from each node pair varies less. The aggregated pruned network resulted from the best contact removal strategy tends to have a large largest eigenvalue, a large modularity and probably a small largest connected component size.

Author(s):  
S. Moore ◽  
T. Rogers

Having knowledge of the contact network over which an infection is spreading opens the possibility of making individualized predictions for the likelihood of different nodes to become infected. When multiple infective strains attempt to spread simultaneously we may further ask which strain, or strains, are most likely to infect a particular node. In this article we investigate the heterogeneity in likely outcomes for different nodes in two models of multi-type epidemic spreading processes. For models allowing co-infection we derive message-passing equations whose solution captures how the likelihood of a given node receiving a particular infection depends on both the position of the node in the network and the interaction between the infection types. For models of competing epidemics in which co-infection is impossible, a more complicated analysis leads to the simpler result that node vulnerability factorizes into a contribution from the network topology and a contribution from the infection parameters.


2011 ◽  
Vol 278 (1724) ◽  
pp. 3544-3550 ◽  
Author(s):  
Gregory M. Ames ◽  
Dylan B. George ◽  
Christian P. Hampson ◽  
Andrew R. Kanarek ◽  
Cayla D. McBee ◽  
...  

Recent studies have increasingly turned to graph theory to model more realistic contact structures that characterize disease spread. Because of the computational demands of these methods, many researchers have sought to use measures of network structure to modify analytically tractable differential equation models. Several of these studies have focused on the degree distribution of the contact network as the basis for their modifications. We show that although degree distribution is sufficient to predict disease behaviour on very sparse or very dense human contact networks, for intermediate density networks we must include information on clustering and path length to accurately predict disease behaviour. Using these three metrics, we were able to explain more than 98 per cent of the variation in endemic disease levels in our stochastic simulations.


2016 ◽  
Vol 57 (4) ◽  
pp. 429-444 ◽  
Author(s):  
K. MCCULLOCH ◽  
M. G. ROBERTS ◽  
C. R. LAING

We investigate the dynamics of a susceptible infected recovered (SIR) epidemic model on small networks with different topologies, as a stepping stone to determining how the structure of a contact network impacts the transmission of infection through a population. For an SIR model on a network of$N$nodes, there are$3^{N}$configurations that the network can be in. To simplify the analysis, we group the states together based on the number of nodes in each infection state and the symmetries of the network. We derive analytical expressions for the final epidemic size of an SIR model on small networks composed of three or four nodes with different topological structures. Differential equations which describe the transition of the network between states are also derived and solved numerically to confirm our analysis. A stochastic SIR model is numerically simulated on each of the small networks with the same initial conditions and infection parameters to confirm our results independently. We show that the structure of the network, degree of the initial infectious node, number of initial infectious nodes and the transmission rate all significantly impact the final epidemic size of an SIR model on small networks.


2021 ◽  
Author(s):  
Christian Selinger ◽  
Marc Choisy ◽  
Samuel Alizon

Coronavirus disease (COVID-19) was detected in Wuhan, China in 2019 and spread worldwide within few weeks. The COVID-19 epidemic started to gain traction in France in March 2020. Sub-national hospital admissions and deaths were then recorded daily and served as the main policy indicators. Concurrently, mobile phone positioning data have been curated to determine the frequency of users being colocalized within a given distance. Contrarily to individual tracking data, these can provide a proxy of human contact networks between subnational administrative units. Motivated by numerous studies correlating human mobility data and disease incidence, we developed predictive time series models of hospital incidence between July 2020 and April 2021. Adding human contact network analytics such as clustering coefficients, contact network strength, null links or curvature as regressors, we found that predictions can be improved substantially (more than 50%) both at the national and sub-national for up to two weeks. Our sub-national analysis also revealed the importance of spatial structure, as incidence in colocalized administrative units improved predictions. This original application of network analytics from co-localisation data to epidemic spread opens new perspectives for epidemics forecasting and public health.


Author(s):  
Gerrit Großmann ◽  
Michael Backenköhler ◽  
Verena Wolf

AbstractIn the recent COVID-19 pandemic, computer simulations are used to predict the evolution of the virus propagation and to evaluate the prospective effectiveness of non-pharmaceutical interventions. As such, the corresponding mathematical models and their simulations are central tools to guide political decision-making. Typically, ODE-based models are considered, in which fractions of infected and healthy individuals change deterministically and continuously over time.In this work, we translate an ODE-based COVID-19 spreading model from literature to a stochastic multi-agent system and use a contact network to mimic complex interaction structures. We observe a large dependency of the epidemic’s dynamics on the structure of the underlying contact graph, which is not adequately captured by existing ODE-models. For instance, existence of super-spreaders leads to a higher infection peak but a lower death toll compared to interaction structures without super-spreaders. Overall, we observe that the interaction structure has a crucial impact on the spreading dynamics, which exceeds the effects of other parameters such as the basic reproduction number R0. We conclude that deterministic models fitted to COVID-19 outbreak data have limited predictive power or may even lead to wrong conclusions while stochastic models taking interaction structure into account offer different and probably more realistic epidemiological insights.


Author(s):  
Ginestra Bianconi

Epidemic processes are relevant to studying the propagation of infectious diseases, but their current use extends also to the study of propagation of ideas in the society or memes and news in online social media. In most of the relevant applications epidemic spreading does not actually take place on a single network but propagates in a multilayer network where different types of interaction play different roles. This chapter provides a comprehensive view of the effect that multilayer network structures have on epidemic processes. The Susceptible–Infected–Susceptible (SIS) Model and the Susceptible–Infected–Removed (SIR) Model are characterized on multilayer networks. Additionally, it is shown that the multilayer networks framework can also allow us to study interacting Awareness and epidemic spreading, competing networks and epidemics in temporal networks.


2019 ◽  
Vol 4 (1) ◽  
Author(s):  
Jack Leitch ◽  
Kathleen A. Alexander ◽  
Srijan Sengupta

AbstractEpidemiological contact network models have emerged as an important tool in understanding and predicting spread of infectious disease, due to their capacity to engage individual heterogeneity that may underlie essential dynamics of a particular host-pathogen system. Just as fundamental are the changes that real-world contact networks undergo over time, both independently of and in response to pathogen spreading. These dynamics play a central role in determining whether a disease will die out or become epidemic within a population, known as the epidemic threshold. In this paper, we provide an overview of methods to predict the epidemic threshold for temporal contact network models, and discuss areas that remain unexplored.


2016 ◽  
Vol 446 ◽  
pp. 129-137 ◽  
Author(s):  
Cunlai Pu ◽  
Siyuan Li ◽  
XianXia Yang ◽  
Zhongqi Xu ◽  
Zexuan Ji ◽  
...  

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