Renal tumors segmentation in abdomen CT Images using 3D-CNN and ConvLSTM

2022 ◽  
Vol 72 ◽  
pp. 103334
Author(s):  
Li Kang ◽  
Ziqi Zhou ◽  
Jianjun Huang ◽  
Wenzhong Han
Keyword(s):  
2021 ◽  
pp. 20210038
Author(s):  
Wutian Gan ◽  
Hao Wang ◽  
Hengle Gu ◽  
Yanhua Duan ◽  
Yan Shao ◽  
...  

Objective: A stable and accurate automatic tumor delineation method has been developed to facilitate the intelligent design of lung cancer radiotherapy process. The purpose of this paper is to introduce an automatic tumor segmentation network for lung cancer on CT images based on deep learning. Methods: In this paper, a hybrid convolution neural network (CNN) combining 2D CNN and 3D CNN was implemented for the automatic lung tumor delineation using CT images. 3D CNN used V-Net model for the extraction of tumor context information from CT sequence images. 2D CNN used an encoder–decoder structure based on dense connection scheme, which could expand information flow and promote feature propagation. Next, 2D features and 3D features were fused through a hybrid module. Meanwhile, the hybrid CNN was compared with the individual 3D CNN and 2D CNN, and three evaluation metrics, Dice, Jaccard and Hausdorff distance (HD), were used for quantitative evaluation. The relationship between the segmentation performance of hybrid network and the GTV volume size was also explored. Results: The newly introduced hybrid CNN was trained and tested on a dataset of 260 cases, and could achieve a median value of 0.73, with mean and stand deviation of 0.72 ± 0.10 for the Dice metric, 0.58 ± 0.13 and 21.73 ± 13.30 mm for the Jaccard and HD metrics, respectively. The hybrid network significantly outperformed the individual 3D CNN and 2D CNN in the three examined evaluation metrics (p < 0.001). A larger GTV present a higher value for the Dice metric, but its delineation at the tumor boundary is unstable. Conclusions: The implemented hybrid CNN was able to achieve good lung tumor segmentation performance on CT images. Advances in knowledge: The hybrid CNN has valuable prospect with the ability to segment lung tumor.


2009 ◽  
Vol 36 (3) ◽  
pp. 835-844 ◽  
Author(s):  
Bohyoung Kim ◽  
Kyoung Ho Lee ◽  
Kil Joong Kim ◽  
Thomas Richter ◽  
Heung-Sik Kang ◽  
...  

Author(s):  
Sota Oguro ◽  
Kemal Tuncali ◽  
Haytham Elhawary ◽  
Paul R. Morrison ◽  
Nobuhiko Hata ◽  
...  

Medical Image Segmentation is the important tool for diagnosing tumor and for planning how to do treatment. The intention of this study is to detect tumor from CT liver images. Initially, liver is segmented from abdomen CT images. Then SVM Classification is included to classify the normal and abnormal liver structure. If it is abnormal then the tumor will be segmented from liver structure. This technique is computed using sensitivity, specificity and accuracy and is providing good result.


2021 ◽  
Vol 2078 (1) ◽  
pp. 012048
Author(s):  
Jiasheng Ni

Abstract Remote medical prognosis application is a category of medical tests tool designed to collect patients’ body conditions and offer diagnosis results synchronously. However, most online applications are predicated on a simple chat bot which typically redirect patients to other online medical websites, which undermines the user experience and may prompt useless information for their reference. To tackle these issues, this paper proposed a medical prognosis application with deep learning techniques for a more responsive and intelligent medical prognosis procedure. This application can be break down into three parts-lung cancer detection, a database-supporting medical QA bot and a Hierarchical Bidirectional LSTM model (HBDA). A 3D-CNN model is built for the lung cancer detection, with a sequence of sliced CT images as inputs and outputs a probability scaler for tumor indications. A knowledge graph is applied in the medical QA bot implementation and the HBDA model is designed for semantic segmentation in order to better capture users’ intention in medical questions. For the performance of the medical prognosis, since we have limited computer memory, the 3D-CNN didn’t perform very well on detecting tumor conditions in the CT images with accuracy at around 70%. The knowledge graph-based medical QA bot intelligently recognize the underlying pattern in patients’ question and delivered decent medical response. The HBDA model performs well on distinguish the similarities and disparities between various medical questions, reaching accuracy at 90%. These results shed light for the feasibility of utilizing deep learning techniques such as 3D-CNN, Knowledge Graph, and Hierarchical Bi-directional LSTM to simulate the medical prognosis process.


2020 ◽  
Vol 38 (6_suppl) ◽  
pp. 626-626
Author(s):  
Nicholas Heller ◽  
Sean McSweeney ◽  
Matthew Thomas Peterson ◽  
Sarah Peterson ◽  
Jack Rickman ◽  
...  

626 Background: The 2019 Kidney and Kidney Tumor Segmentation challenge (KiTS19) was an international competition held in conjunction with the 2019 International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) and sought to stimulate progress on this automatic segmentation frontier. Growing rates of kidney tumor incidence led to research into the use of artificial inteligence (AI) to radiographically differentiate and objectively characterize these tumors. Automated segmentation using AI objectively quantifies complexity and aggression of renal tumors to better differentiate and describe the tumors for improved treatment decision making. Methods: A training set of over 31,000 CT images from 210 patients with kidney tumors was publicly released with corresponding semantic segmentation masks. 106 teams from five continents used this data to develop automated deep learning systems to predict the true segmentation masks on a test set of an additional 13,500 CT images in 90 patients for which the corresponding ground truth segmentations were kept private. These predictions were scored and ranked according to their average Sørensen-Dice coefficient between kidney and tumor across the 90 test cases. Results: The winning team achieved a Dice of 0.974 for kidney and 0.851 for tumor, approaching the human inter-annotator performance on kidney (0.983) but falling short on tumor (0.923). This challenge has now entered an “open leaderboard” phase where it serves as a challenging benchmark in 3D semantic segmentation. Conclusions: Results of the KiTS19 challenge show deep learning methods are fully capable of reliable segmentation of kidneys and kidney tumors. The KiTS19 challenge attracted a high number of submissions and serves as an important and challenging benchmark in 3D segmentation. The publicly available data will further propel the use of automated 3D segmentation analysis. Fully segmented kidneys and tumors allow for automated calculation of all types of nephrometry, tumor textural variation and discovery of new predictive features important for personalized medicine and accurate prediction of patient relevant outcomes.


2008 ◽  
Vol 15 (3) ◽  
pp. 314-325 ◽  
Author(s):  
Bohyoung Kim ◽  
Kyoung Ho Lee ◽  
Kil Joong Kim ◽  
Rafal Mantiuk ◽  
Vasundhara Bajpai ◽  
...  

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