Statistical performance of a multicomparison method for generalized species diversity indices under realistic empirical scenarios

2017 ◽  
Vol 72 ◽  
pp. 545-552 ◽  
Author(s):  
Davi Butturi-Gomes ◽  
Miguel Petrere ◽  
Henrique C. Giacomini ◽  
Silvio Sandoval Zocchi
ENTOMON ◽  
2021 ◽  
Vol 46 (4) ◽  
pp. 279-284
Author(s):  
S. Barathy ◽  
T. Sivaruban ◽  
Srinivasan Pandiarajan ◽  
Isack Rajasekaran ◽  
M. Bernath Rosi

In the study on the diversity and community structure of Ephemeroptera in the freshwater stream of Chinnasuruli falls on Megamalai hills, a total of 523 specimens belonging to thirteen genera and five families were collected in six month periods. Of the five families, Teloganodidae and Leptophlebiidae exhibited high diversity and Caenidae showed low diversity. Choroterpes alagarensis (Leptophlebiidae) is the most dominant species. Diversity indices such as Shannon and Simpson indices showed that diversity was maximum in November and December and it was minimum in August and January. Canonical Correspondence Analysis revealed that rainfall, water flow, turbidity, and air temperature were the major stressors in affecting the Ephemeropteran community structure.


2021 ◽  
Vol 886 (1) ◽  
pp. 012047
Author(s):  
A Achmad ◽  
U Damayanti ◽  
R I Maulany

Abstract Lower mountain forest in the complex of Mount Bulusaraung Bantimurung Bulusaraung National Park, is a one of bird’s habitat in the South Sulawesi. This area is a tourist destination, especially mountain climbing activities. Thus, it is necessary to know the diversity of animals, especially birds on this hiking trail, so that the information can be used to support ecotourism activities. This study aims to analyze the diversity of bird species in the complex of Bulusaraung Mountain, Bantimurung Bulusaraung National Park in order to support ecotourism activities. This research was conducted from April to June 2018. Data was collected using the line transect method on three lines, namely the Balleanging, Kattokaddaro and Tompobulu lines. The second and third paths are hiking trails, while the rest are trails leading to community agricultural areas. The geographical position of the transect line was recorded using GPS. The GIS method was used to generate a bird watching trail map. Data analysis was carried out to calculate the individual density and frequency of bird presence. In addition, the species diversity indices, species evenness indices, and species richness indices were also calculated. The results showed that there were 44 species of birds found in the study area, which were 16 species in the Balleanging line, 27 species in the Kattokaddaro line and 37 species in the Tompobulu line. The highest bird species diversity indices value was found on the Tompobulu line (H' = 2.93), while on the Kattokaddaro line it was H' = 2.73 and the Balleanging H' = 2.55. The results of this study will support the management strategy in Bantimurung Bulusaraung National Park in order to harmonize the conservation of biological resources through ecotourism activities that involve local communities to increase their economic income.


Author(s):  
Xianhua Xie ◽  
Yuanlin Ma ◽  
Zuguo Yu ◽  
Guosheng Han

Species diversity in microbiome is a cutting-edge concept in metagenomic research. In this study, we propose a multifractal analysis for metagenomic research. From the chaos game representation (CGR) visualization of simulated and real metagenomes, we find that there exists self-similarity in the visualization of metagenomes. Then we compute the multifractal dimensions for simulated and real metagenomes. For simulated metagenomes, we also compute their diversity indices, such as species richness indices, Shannon’s diversity indices and Simpson’s diversity indices respectively for varying value of . Fom the Pearson correlation coefficients between their multifractal dimensions and traditional species diversity indices, we find that the correlation coefficients between the multifractal dimensions and species richness indices and Shannon diversity indices reach their maximums at respectively. The correlation coefficients between the multifractal dimensions and Simpson’s diversity indices reach their maximums at nearly. So the traditional diversity indices can be unified by the frame of multifractal analysis. These results coincided with the similar results in macrobial ecology. Finally, we apply our methods to real metagenomes of 100 infants’ gut microbiomes when they are newborn, 4 months and 12 months. Our results show that multifractal dimensions of infants’ gut microbiomes can discriminate the age difference.


2015 ◽  
Vol 6 (1) ◽  
pp. 47 ◽  
Author(s):  
Suprapto Suprapto

Perairan Tarakan termasuk daerah penangkapan sumber daya ikan demersal dan udang cukup potensial di KalimantanUtara. Tingginya tingkat eksploitasi ikan demersal dengan menggunakan trawlmenyebabkan keragaman jenisnya rendah. Penelitian ikan demersal dilakukan di perairan Tarakan pada bulanMei,Agustus dan Nopember 2012. Tujuan penelitian adalah untuk memperoleh indeks keanekaragaman jenis ikan demersal. Data spesies ikan demersal dikumpulkan dari hasil tangkapan jaring trawl yang dioperasikan oleh kapal motor 20GT dengan metode sapuan area. Hasil penelitian menunjukkan bahwa jumlah taksa ikan demersal sebanyak 86 spesies yang tergolong kedalam45 famili. Komposisi jenis hasil tangkapan trawl didominasi oleh famili Leiognathidae (ikan petek), Sciaenidae (ikan gulama), Harpadontidae (ikan nomei),Apogonidae (ikan serinding) danMullidae (ikan bijinangka). Status keanekaragaman jenis termasuk dalamkategori sedang dengan indeks “Shanon-Wiener” (H’)berkisar antara 1,7-2,5 sedangkan indeks kekayaan “Margalef” (R1 ) berkisar antara 7-8. Penyebaran spesies ikan demersal bersifat sedang dengan indeks kemerataan jenis (E) rata-rata sebesra 0,5.Kelimpahan ikan demersal tidak ada yang dominan, ditunjukkan oleh nilai indeks kemerataan jenis “Pielou” (E) rata-rata sebesar 0,4.Tarakan and adjacent waters is one of potentially fishing ground of demersal fish resources in north Kalimantan. High exploitation by trawler tend to decreased of biodiversity of demersal fish in this area. Research has been conducted in the waters of Tarakan duringMay, August and November 2012. The aim of this research is to get species diversity indices of demersal fish, which is expected to be useful as one of the data capacity for sustainable fisheries management policy. Data obtained by using trawl fishing gear with a sweept area method.The results showed that demersal fish species richness 86 species, belonging to 45 families. Dominant family are Leiognathidae, Sciaenidae, Harpadontidae, Apogonidae andMullidae. Result of analysis indicate that species diversity in Tarakan waters in the medium category. Status of biodiversity consist of: range value diversityindices “Shanon-Wiener” (H’) was 1.7 to 2.5; species richness indices of “Margalef” (R1 ) are between 7-8; evenness indices of “Pielou” (E 1) was 0,5 and dominant indices “Pielou” (E) an average of 0.4.


2012 ◽  
Vol 2012 ◽  
pp. 1-7 ◽  
Author(s):  
Dongping Meng ◽  
Jin-Tun Zhang ◽  
Min Li

Study on plant diversity is the base of woodland conservation. The Guancen Mountains are the northern end of Luliang mountain range in North China. Fifty-three quadrats of10 m×20 mof woodland communities were randomly established along an altitudinal gradient. Data for species composition and environmental variables were measured and recorded in each quadrat. To investigate the variation of woodland communities, a Two-Way Indicator Species Analysis (TWINSPAN) and a Canonical Correspondence Analysis (CCA) were conducted, while species diversity indices were used to analyse the relationships between species diversity and environmental variables in this study. The results showed that there were eight communities of woodland vegetation; each of them had their own characteristics in composition, structure, and environment. The variation of woodland communities was significantly related to elevation and also related to slope, slope aspect, and litter thickness. The cumulative percentage variance of species-environment relation for the first three CCA axes was 93.5%. Elevation was revealed as the factor which most influenced community distribution and species diversity. Species diversity was negatively correlated with elevation, slope aspect, and litter thickness, but positively with slope. Species richness and heterogeneity increased first and then decreased but evenness decreased significantly with increasing elevation. Species diversity was correlated with slope, slope aspect, and litter thickness.


PLoS ONE ◽  
2013 ◽  
Vol 8 (7) ◽  
pp. e69594 ◽  
Author(s):  
Hideyuki Doi ◽  
Kwang-Hyeon Chang ◽  
Yuichiro Nishibe ◽  
Hiroyuki Imai ◽  
Shin-ichi Nakano

2021 ◽  
Vol 13 (13) ◽  
pp. 2467
Author(s):  
Sabelo Madonsela ◽  
Moses A. Cho ◽  
Abel Ramoelo ◽  
Onisimo Mutanga

The emergence of the spectral variation hypothesis (SVH) has gained widespread attention in the remote sensing community as a method for deriving biodiversity information from remotely sensed data. SVH states that spectral heterogeneity on remotely sensed imagery reflects environmental heterogeneity, which in turn is associated with high species diversity and, therefore, could be useful for characterizing landscape biodiversity. However, the effect of phenology has received relatively less attention despite being an important variable influencing plant species spectral responses. The study investigated (i) the effect of phenology on the relationship between spectral heterogeneity and plant species diversity and (ii) explored spectral angle mapper (SAM), the coefficient of variation (CV) and their interaction effect in estimating species diversity. Stratified random sampling was adopted to survey all tree species with a diameter at breast height of > 10 cm in 90 × 90 m plots distributed throughout the study site. Tree species diversity was quantified by the Shannon diversity index (H′), Simpson index of diversity (D2) and species richness (S). SAM and CV were employed on Landsat-8 data to compute spectral heterogeneity. The study applied linear regression models to investigate the relationship between spectral heterogeneity metrics and species diversity indices across four phenological stages. The results showed that the end of the growing season was the most ideal phenological stage for estimating species diversity, following the SVH concept. During this period, SAM and species diversity indices (S, H′, D2) had an r2 of 0.14, 0.24, and 0.20, respectively, while CV had an r2 of 0.22, 0.22, and 0.25, respectively. The interaction of SAM and CV improved the relationship between the spectral data and H′ and D2 (from r2 of 0.24 and 0.25 to r2 of 0.32 and 0.28, respectively) at the end of the growing season. The two spectral heterogeneity metrics showed differential sensitivity to components of plant diversity. SAM had a high relationship with H′ followed by D2 and then a lower relationship with S throughout the different phenological stages. Meanwhile, CV had a higher relationship with D2 than other plant diversity indices and its relationship with S and H′ remained similar. Although the coefficient of determination was comparatively low, the relationship between spectral heterogeneity metrics and species diversity indices was statistically significant (p < 0.05) and this supports the assertion that SVH could be implemented to characterize plant species diversity. Importantly, the application of SVH should consider (i) the choice of spectral heterogeneity metric in line with the purpose of the SVH application since these metrics relate to components of species diversity differently and (ii) vegetation phenology, which affects the relationship that spectral heterogeneity has with plant species diversity.


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