In order to determine the changes in the main indicators characterizing the complexes of soil fungi, under the influence of the technologies of crops cultivation of fodder crop rotation, in 2017, a sod-podzolic medium loamy soil was studied. The experiment included the following factors: crops (annual grasses + perennial grasses - perennial grasses 1 - perennial grasses 2 - perennial grasses 3 - fallow - barley - corn for silage), tillage system of soil (plowing and combined), 5 cultivation technologies (differ in the intensity of fertilizer and plant protection systems), the experiment was repeated three times. The studies allowed to establish the total number of micromycetes (10-28 thousand Kfu/g) and their systemat-ic affiliation (2 genera of the Zigomikot department, 7 genera of the Ascomicot department, two yeasts of the Basidiomycot department), with the largest number of variants of intensive technology. The structure of soil fungi complexes was determined by the cultivated crops and the conditions created by them with the highest frequency of occurrence in the Penicillium and Botrytis genera; in general, their composition and number were typical for the soils of taiga-forest zone. Phytopathogenic genera did not get high dis-tribution (Fusarium), which, along with the activity of saprotrophic genera of fungi, contributed to ob-taining high yields of cultivated crops when applying fertilizer in intensive technologies. The obtained results show the advantage of intensive technology in comparison with the ecological one both in terms of the structural organization of soil fungi and in the yield of t grown crops (the increase was 2-4 times).