scholarly journals A new era for plant science: spatial single-cell transcriptomics

2021 ◽  
Vol 60 ◽  
pp. 102041
Author(s):  
Stefania Giacomello
Keyword(s):  
2021 ◽  
Vol 23 (7) ◽  
Author(s):  
Sally Yu Shi ◽  
Xin Luo ◽  
Tracy M. Yamawaki ◽  
Chi-Ming Li ◽  
Brandon Ason ◽  
...  

Abstract Purpose of Review Cardiac fibroblast activation contributes to fibrosis, maladaptive remodeling and heart failure progression. This review summarizes the latest findings on cardiac fibroblast activation dynamics derived from single-cell transcriptomic analyses and discusses how this information may aid the development of new multispecific medicines. Recent Findings Advances in single-cell gene expression technologies have led to the discovery of distinct fibroblast subsets, some of which are more prevalent in diseased tissue and exhibit temporal changes in response to injury. In parallel to the rapid development of single-cell platforms, the advent of multispecific therapeutics is beginning to transform the biopharmaceutical landscape, paving the way for the selective targeting of diseased fibroblast subpopulations. Summary Insights gained from single-cell technologies reveal critical cardiac fibroblast subsets that play a pathogenic role in the progression of heart failure. Combined with the development of multispecific therapeutic agents that have enabled access to previously “undruggable” targets, we are entering a new era of precision medicine.


2018 ◽  
Vol 1 (1) ◽  
pp. 2-6 ◽  
Author(s):  
Huidan Zhang ◽  
Naiwen Cui ◽  
Yamei Cai ◽  
Fengyang Lei ◽  
David A. Weitz

2020 ◽  
Vol 1 ◽  
Author(s):  
Olivier Hamant

Abstract Like many scientific communities, plant science has moved to a new era with the rise of quantitative approaches. This is not merely about high-resolution quantification methods or the generation of massive datasets through omics; the quantitative revolution is much deeper because it unfolds the rich complexity behind plant life.


Lab on a Chip ◽  
2014 ◽  
Vol 14 (18) ◽  
pp. 3629-3639 ◽  
Author(s):  
Tríona M. O'Connell ◽  
Damien King ◽  
Chandra K. Dixit ◽  
Brendan O'Connor ◽  
Dermot Walls ◽  
...  

It is now widely recognised that the earliest changes that occur on a cell when it is stressed or becoming diseased are alterations in its surface glycosylation.


Author(s):  
Maria Teresa Di Martino ◽  
Stefania Meschini ◽  
Katia Scotlandi ◽  
Chiara Riganti ◽  
Enrico De Smaele ◽  
...  

2008 ◽  
Vol 1 (1) ◽  
pp. 1 ◽  
Author(s):  
Sheng Luan ◽  
Xiao-Ya Chen ◽  
Natasha Raikhel ◽  
Winslow Briggs
Keyword(s):  

2021 ◽  
Author(s):  
Hongjie Li ◽  
Jasper Janssens ◽  
Maxime De Waegeneer ◽  
Sai Saroja Kolluru ◽  
Kristofer Davie ◽  
...  

The ability to obtain single cell transcriptomes for stable cell types and dynamic cell states is ushering in a new era for biology. We created the Tabula Drosophilae, a single cell atlas of the adult fruit fly which includes 580k cells from 15 individually dissected sexed tissues as well as the entire head and body. Over 100 researchers from the fly community contributed annotations to >250 distinct cell types across all tissues. We provide an in-depth analysis of cell type-related gene signatures and transcription factor markers, as well as sexual dimorphism, across the whole animal. Analysis of common cell types that are shared between tissues, such as blood and muscle cells, allowed the discovery of rare cell types and tissue-specific subtypes. This atlas provides a valuable resource for the entire Drosophila community and serves as a comprehensive reference to study genetic perturbations and disease models at single-cell resolution.


2021 ◽  
Vol 15 ◽  
Author(s):  
Patricia R. Nano ◽  
Claudia V. Nguyen ◽  
Jessenya Mil ◽  
Aparna Bhaduri

The cerebral cortex derives its cognitive power from a modular network of specialized areas processing a multitude of information. The assembly and organization of these regions is vital for human behavior and perception, as evidenced by the prevalence of area-specific phenotypes that manifest in neurodevelopmental and psychiatric disorders. Generations of scientists have examined the architecture of the human cortex, but efforts to capture the gene networks which drive arealization have been hampered by the lack of tractable models of human neurodevelopment. Advancements in “omics” technologies, imaging, and computational power have enabled exciting breakthroughs into the molecular and structural characteristics of cortical areas, including transcriptomic, epigenomic, metabolomic, and proteomic profiles of mammalian models. Here we review the single-omics atlases that have shaped our current understanding of cortical areas, and their potential to fuel a new era of multi-omic single-cell endeavors to interrogate both the developing and adult human cortex.


2020 ◽  
Vol 2020 ◽  
pp. 1-19 ◽  
Author(s):  
Andrés Noé ◽  
Tamsin N. Cargill ◽  
Carolyn M. Nielsen ◽  
Andrew J. C. Russell ◽  
Eleanor Barnes

Single-cell RNA sequencing allows highly detailed profiling of cellular immune responses from limited-volume samples, advancing prospects of a new era of systems immunology. The power of single-cell RNA sequencing offers various opportunities to decipher the immune response to infectious diseases and vaccines. Here, we describe the potential uses of single-cell RNA sequencing methods in prophylactic vaccine development, concentrating on infectious diseases including COVID-19. Using examples from several diseases, we review how single-cell RNA sequencing has been used to evaluate the immunological response to different vaccine platforms and regimens. By highlighting published and unpublished single-cell RNA sequencing studies relevant to vaccinology, we discuss some general considerations how the field could be enriched with the widespread adoption of this technology.


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