Systematic analysis reveals O-methyltransferase gene family members involved in flavonoid biosynthesis in grape

Author(s):  
Suwen Lu ◽  
Yaxian Zhuge ◽  
Tianyi Hao ◽  
Zhongjie Liu ◽  
Mengwei Zhang ◽  
...  
Genes ◽  
2020 ◽  
Vol 12 (1) ◽  
pp. 31
Author(s):  
Zheng Chen ◽  
Zijie Shen ◽  
Da Zhao ◽  
Lei Xu ◽  
Lijun Zhang ◽  
...  

The lysin motif (LysM) family comprise a number of defense proteins that play important roles in plant immunity. The LysM family includes LysM-containing receptor-like proteins (LYP) and LysM-containing receptor-like kinase (LYK). LysM generally recognizes the chitin and peptidoglycan derived from bacteria and fungi. Approximately 4000 proteins with the lysin motif (Pfam PF01476) are found in prokaryotes and eukaryotes. Our study identified 57 LysM genes and 60 LysM proteins in wheat and renamed these genes and proteins based on chromosome distribution. According to the phylogenetic and gene structure of intron–exon distribution analysis, the 60 LysM proteins were classified into seven groups. Gene duplication events had occurred among the LysM family members during the evolution process, resulting in an increase in the LysM gene family. Synteny analysis suggested the characteristics of evolution of the LysM family in wheat and other species. Systematic analysis of these species provided a foundation of LysM genes in crop defense. A comprehensive analysis of the expression and cis-elements of LysM gene family members suggested that they play an essential role in defending against plant pathogens. The present study provides an overview of the LysM family in the wheat genome as well as information on systematic, phylogenetic, gene duplication, and intron–exon distribution analyses that will be helpful for future functional analysis of this important protein family, especially in Gramineae species.


Gene ◽  
2016 ◽  
Vol 575 (2) ◽  
pp. 458-472 ◽  
Author(s):  
Xiaogang Liu ◽  
Yan Luo ◽  
Hongkun Wu ◽  
Wanpeng Xi ◽  
Jie Yu ◽  
...  

1989 ◽  
Vol 264 (12) ◽  
pp. 7046-7053 ◽  
Author(s):  
C M Giachelli ◽  
J Lin-Jones ◽  
C J Omiecinski

2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Xiumei Miao ◽  
Lijing Zhang ◽  
Xiaowei Hu ◽  
Shuzhen Nan ◽  
Xiaolong Chen ◽  
...  

Abstract Background Linoleic acid is an important polyunsaturated fatty acid, required for all eukaryotes. Microsomal delta-12 (Δ12) oleate desaturase (FAD2) is a key enzyme for linoleic acid biosynthesis. Desert shrub Artemisia sphaerocephala is rich in linoleic acid, it has a large FAD2 gene family with twenty-six members. The aim of this work is to unveil the difference and potentially functionality of AsFAD2 family members. Results Full-length cDNAs of twenty-one AsFAD2 genes were obtained from A. sphaerocephala. The putative polypeptides encoded by AsFAD2 family genes showed a high level of sequence similarity and were relatively conserved during evolution. The motif composition was also relatively conservative. Quantitative real-time PCR analysis revealed that the AsFAD2–1 gene was strongly expressed in developing seeds, which may be closely associated with the high accumulating ability of linoleic acid in A. sphaerocephala seeds. Although different AsFAD2 family members showed diverse response to salt stress, the overall mRNA levels of the AsFAD2 family genes was stable. Transient expression of AsFAD2 genes in the Nicotiana benthamiana leaves revealed that the encoded proteins were all located in the endoplasmic reticulum. Heterologous expression in Saccharomyces cerevisiae suggested that only three AsFAD2 enzymes, AsFAD2–1, − 10, and − 23, were Δ12 oleate desaturases, which could convert oleic acid to linoleic acid, whereas AsFAD2–1 and AsFAD2–10 could also produce palmitolinoleic acid. Conclusions This research reported the cloning, expression studies, subcellular localization and functional identification of the large AsFAD2 gene family. These results should be helpful in understanding fatty acid biosynthesis in A. sphaerocephala, and has the potential to be applied in the study of plant fatty acids traits.


Gene ◽  
2019 ◽  
Vol 689 ◽  
pp. 183-193
Author(s):  
Thomas Kadampanattu Uthup ◽  
Anantharamanan Rajamani ◽  
Minimol Ravindran ◽  
Thakurdas Saha

2018 ◽  
Vol 18 (1) ◽  
Author(s):  
Zhibin Wang ◽  
Qibin Yu ◽  
Wanxia Shen ◽  
Choaa A. El Mohtar ◽  
Xiaochun Zhao ◽  
...  

2007 ◽  
Vol 48 (7) ◽  
pp. 1451-1456 ◽  
Author(s):  
Andrea Dichlberger ◽  
Larry A. Cogburn ◽  
Johannes Nimpf ◽  
Wolfgang J. Schneider

1998 ◽  
Vol 22 (3) ◽  
pp. 150-157 ◽  
Author(s):  
Donald C. Morizot ◽  
Brenda B. McEntire ◽  
Luis Della Coletta ◽  
Steven Kazianis ◽  
Manfred Schartl ◽  
...  

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