scholarly journals Heat profiles of ‘superhot’ and New Mexican type chile peppers (Capsicum spp.)

2021 ◽  
Vol 283 ◽  
pp. 110088
Author(s):  
Dennis N. Lozada ◽  
Danise L. Coon ◽  
Ivette Guzmán ◽  
Paul W. Bosland
2020 ◽  
Author(s):  
Vivian Bernau ◽  
Lev Jardón Barbolla ◽  
Leah K. McHale ◽  
Kristin L. Mercer

AbstractResponses to drought within a single species may vary based on plant development stage, drought severity, and the avoidance or tolerance mechanisms employed. Early drought stress can restrict emergence and seedling growth. Thus, in areas where water availability is limited, rapid germination leading to early plant establishment may be beneficial. Alternatively, germination without sufficient water to support the seedling may lead to early senescence, so reduced germination under low moisture conditions may be adaptive at the level of the population. We studied the germination response to osmotic stress of diverse chile pepper germplasm collected in southern Mexico from varied ecozones, cultivation systems, and of named landraces. Drought stress was simulated using polyethylene glycol solutions. Overall, survival time analysis revealed delayed germination at the 20% concentration of PEG across all ecozones. The effect was most pronounced in the genotypes from hotter, drier ecozones. Additionally, accessions from wetter and cooler ecozones had the fastest rate of germination. Moreover, accessions of the landraces Costeño Rojo and Tusta germinated more slowly and incompletely if sourced from a drier ecozone than a wetter one, indicating that slower, reduced germination under drought stress may be an adaptive avoidance mechanism. Significant differences were also observed between named landraces, with more domesticated types from intensive cultivation systems nearly always germinating faster than small-fruited backyard- or wild-types, perhaps due to the fact that the smaller-fruited accessions have generally undergone less selection. Thus, we conclude that there is evidence of local adaptation to both ecozone of origin and source cultivation system in germination characteristics of diverse chile peppers.


HortScience ◽  
1992 ◽  
Vol 27 (6) ◽  
pp. 623d-623
Author(s):  
Marisa M. Wall ◽  
Charles L. Biles

New Mexican chile peppers were harvested at weekly intervals beginning 105 days after planting (DAP), and evaluated for ethylene (C2H4) production, respiration rates, chlorophyll content, beta-galactosidase activity, polygalacturonase (PG) activity, and fruit firmness. Physiological changes were most apparent in peppers harvested 139-154 DAP. Beta-galactosidase activity increased rapidly beginning 147 DAP, and reached a peak of 24.5 mmol·gfw-1 when peppers were harvested 160 DAP. Polygalacturonase was not detectable at any stage of maturation. Fruit firmness was greatest (35.8 N) at 139 DAP and decreased significantly at 160 DAP. Carbon dioxide production and chlorophyll content were highest in young pods harvested 105 DAP, and decreased steadily thereafter. Ethylene production peaked (0.185-0.202 nl·gfw-1·h-1) in peppers harvested between 146-154 DAP.


2021 ◽  
Author(s):  
Dennis N. Lozada ◽  
Lanie Whelpley ◽  
Andrea Acuña-Galindo

Abstract Chile peppers (Capsicum spp.) are among the most important vegetable crops in the world due to their health-related, economic, and industrial uses. In recent years, quantitative trait loci (QTL) mapping approaches have been widely implemented to identify genomic regions affecting variation for different traits for marker-assisted selection (MAS) in peppers. Meta-QTL analysis for different traits in Capsicum remains lacking, and therefore it would be necessary to re-evaluate identified QTL for a more precise MAS for genetic improvement. We report the first known meta-QTL analysis for diverse traits in the chile pepper QTLome. A literature survey using 29 published linkage mapping studies identified 766 individual QTL from five different trait classes. A total of 311 QTL were projected into a consensus map. Meta-analysis identified 30 meta-QTL regions distributed across the 12 chromosomes of Capsicum. MQTL5.1 and MQTL5.2 related to Phytophthora capsici fruit and root rot resistance were delimited to < 1.0 cM confidence intervals in chromosome P5. Candidate gene analysis for the flanking sequences for the P5 meta-QTL revealed biological functions related to DNA repair and transcription regulation. Moreover, epigenetic mechanisms such as histone and RNA methylation and demethylation were predicted, indicating the potential role of epigenetics for P. capsici resistance. Allele specific SNP markers for the meta-QTL will be developed and validated using different breeding populations of Capsicum for MAS of P. capsici resistant lines. Altogether, results from meta-QTL analysis for chile pepper QTLome rendered further insights into the genetic architecture of different traits for this valuable horticultural crop.


1993 ◽  
Vol 118 (4) ◽  
pp. 476-480 ◽  
Author(s):  
Charles Lee Biles ◽  
Marisa M. Wall ◽  
Kevin Blackstone

New Mexican Chile peppers (Capsicum annuum L. `New Mexico 6-4') were harvested at weekly intervals beginning 20 days after flowering (DAF), and were evaluated for ethylene (C2 H4) production, respiration rates, chlorophyll content, degradative enzyme activity (cellulase, polygalacturonase, ß-galactosidase), and fruit firmness. Morphological and physiological changes were most apparent in peppers harvested 54 to 69 DAF. ß-galactosidase activity increased rapidly beginning 54 DAF and reached a peak by 89 DAF. Fruit firmness was highest (36 newtons) at 54 DAF and had decreased significantly by 69 DAF. Carbon dioxide production and chlorophyll content were highest in young pods harvested 20 DAF and decreased steadily thereafter. A climacteric increase of CO, was absent. There were two peaks in C2 H4 production: one associated with rapid fruit growth and the other with color change (61 to 69 DAF). Fruit harvested on the same day but at different developmental stages (green to red) were similar to those observed in fruit harvested over the season for the physiological characteristics tested. Separation of pepper fruit soluble proteins on SDS-PAGE demonstrated increased intensity in protein bands at 27, 35, and 40 kDa and decreased intensity of 51 kDa band as the fruit matured. Several biochemical processes appeared to be enhanced in Chile pepper fruit from 47 to 69 DAF.


Horticulturae ◽  
2021 ◽  
Vol 7 (8) ◽  
pp. 227
Author(s):  
Dennis N. Lozada ◽  
Madelin Whelpley ◽  
Andrea Acuña-Galindo

In recent years, quantitative trait loci (QTL) mapping approaches have been widely implemented to identify genomic regions affecting variation for different traits for marker-assisted selection (MAS). Meta-QTL analysis for different traits in chile peppers (Capsicum spp.) remains lacking, and therefore it would be necessary to re-evaluate identified QTL for a more precise MAS for genetic improvement. We report the first known meta-QTL analysis for diverse traits in the chile pepper QTLome. A literature survey using 29 published linkage mapping studies identified 766 individual QTL from five different trait classes. A total of 311 QTL were projected into a consensus map. Meta-analysis identified 30 meta-QTL regions distributed across the 12 chromosomes of Capsicum. MQTL5.1 and MQTL5.2 related to Phytophthora capsici fruit and root rot resistance were delimited to < 1.0 cM confidence intervals in chromosome P5. Candidate gene analysis for the P5 meta-QTL revealed functions related to histone methylation and demethylation, indicating the potential role of epigenetics for P. capsici resistance. Allele-specific markers for the meta-QTL will be developed and validated for MAS of P. capsici resistant lines. Altogether, results from meta-QTL analysis for chile pepper QTLome rendered further insights into the genetic architecture of different traits for this valuable horticultural crop.


2014 ◽  
Vol 24 (3) ◽  
pp. 281-284 ◽  
Author(s):  
Stephanie J. Walker ◽  
Paul A. Funk

New Mexican-type red and green chile (Capsicum annuum) is important to New Mexico’s identity and economy. Producers began experimenting with mechanical harvest in the mid-1960s, but efforts stalled in the 1970s. Adverse impact to production following the implementation of the North American Free Trade Agreement spurred renewed interest in chile mechanization. Through private and public collaboration, the red chile industry in New Mexico has successfully transitioned with more than 80% of domestic acreage currently mechanized. Green chile has proven to be more challenging with fruit damage and lack of efficient mechanical stem removal posing key obstacles. Recent identification and developments in equipment have provided necessary components for mechanization of green chile, but must be scaled-up to production volumes.


2021 ◽  
Author(s):  
Dennis N. Lozada ◽  
Madhav Bhatta ◽  
Danise Coon ◽  
Paul W. Bosland

Abstract Background: Chile peppers (Capsicum spp.) are among the most important horticultural crops in the world due to their number of uses. They are considered a major cultural and economic crop in the state of New Mexico in the United States. Evaluating genetic diversity in current New Mexican germplasm would facilitate genetic improvement for different traits. This study assessed genetic diversity, population structure, and linkage disequilibrium (LD) among 165 chile pepper genotypes using single nucleotide polymorphism (SNP) markers derived from genotyping-by-sequencing (GBS). Results: A GBS approach identified 66,750 high-quality SNP markers with known map positions distributed across the 12 chromosomes of Capsicum. Principal components analysis revealed four distinct clusters based on species. Neighbor-joining phylogenetic analysis among New Mexico State University (NMSU) chile pepper varieties showed two main clusters, where the C. annuum genotypes grouped together based on fruit or pod type. A Bayesian clustering approach for the Capsicum population inferred K= 2 as the optimal number of clusters, where the C. chinense and C. frutescens grouped in a single cluster. Analysis of molecular variance revealed majority of variation to be between the Capsicum species (76.08%). Extensive LD decay (~5.59 Mb) across the whole Capsicum population was observed, demonstrating that a lower number of markers would be required for implementing genomewide association studies for different traits in New Mexican type chile peppers. Tajima’s D values demonstrated positive selection, population bottleneck, and balancing selection for the New Mexico Capsicum population. Genetic diversity for the New Mexican chile peppers was relatively low, indicating the need to introduce new alleles in the breeding program to broaden the genetic base of current germplasm. Conclusions: Analysis of genetic diversity among New Mexican chile peppers were evaluated using GBS-derived SNP markers and genetic relatedness on the species level was observed. Introducing novel alleles from other breeding programs or from wild species could help increase diversity in current germplasm. We present valuable information for future association mapping and genomic selection for different traits for New Mexican chile peppers for genetic improvement through marker-assisted breeding.


BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Dennis N. Lozada ◽  
Madhav Bhatta ◽  
Danise Coon ◽  
Paul W. Bosland

Abstract Background Chile peppers (Capsicum spp.) are among the most important horticultural crops in the world due to their number of uses. They are considered a major cultural and economic crop in the state of New Mexico in the United States. Evaluating genetic diversity in current New Mexican germplasm would facilitate genetic improvement for different traits. This study assessed genetic diversity, population structure, and linkage disequilibrium (LD) among 165 chile pepper genotypes using single nucleotide polymorphism (SNP) markers derived from genotyping-by-sequencing (GBS). Results A GBS approach identified 66,750 high-quality SNP markers with known map positions distributed across the 12 chromosomes of Capsicum. Principal components analysis revealed four distinct clusters based on species. Neighbor-joining phylogenetic analysis among New Mexico State University (NMSU) chile pepper cultivars showed two main clusters, where the C. annuum genotypes grouped together based on fruit or pod type. A Bayesian clustering approach for the Capsicum population inferred K = 2 as the optimal number of clusters, where the C. chinense and C. frutescens grouped in a single cluster. Analysis of molecular variance revealed majority of variation to be between the Capsicum species (76.08 %). Extensive LD decay (~ 5.59 Mb) across the whole Capsicum population was observed, demonstrating that a lower number of markers would be required for implementing genome wide association studies for different traits in New Mexican type chile peppers. Tajima’s D values demonstrated positive selection, population bottleneck, and balancing selection for the New Mexico Capsicum population. Genetic diversity for the New Mexican chile peppers was relatively low, indicating the need to introduce new alleles in the breeding program to broaden the genetic base of current germplasm. Conclusions Genetic diversity among New Mexican chile peppers was evaluated using GBS-derived SNP markers and genetic relatedness on the species level was observed. Introducing novel alleles from other breeding programs or from wild species could help increase diversity in current germplasm. We present valuable information for future association mapping and genomic selection for different traits for New Mexican chile peppers for genetic improvement through marker-assisted breeding.


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