Incorporating asymmetric PCR and microarray hybridization protocols onto an integrated microfluidic device, screening for the Escherichia coli ssrA gene

2018 ◽  
Vol 261 ◽  
pp. 325-334 ◽  
Author(s):  
Des Brennan ◽  
Barry Glynn ◽  
Gemma Keegan ◽  
Colette McDonagh ◽  
Thomas Barry ◽  
...  
2009 ◽  
Vol 52 (3) ◽  
pp. 1031-1039
Author(s):  
J.-Y. Yoon ◽  
J.-H. Han ◽  
C. Y. Choi ◽  
M. Bui ◽  
R. G. Sinclair

Talanta ◽  
2017 ◽  
Vol 170 ◽  
pp. 36-40
Author(s):  
Tereza Mašková ◽  
Lenka Hárendarčíková ◽  
Jan Petr

2011 ◽  
Vol 3 (9) ◽  
pp. 1988 ◽  
Author(s):  
Jun Sha ◽  
Yaolei Wang ◽  
Jianchun Wang ◽  
Wenming Liu ◽  
Qin Tu ◽  
...  

Lab on a Chip ◽  
2006 ◽  
Vol 6 (9) ◽  
pp. 1163 ◽  
Author(s):  
Hyun Ho Lee ◽  
James Smoot ◽  
Zack McMurray ◽  
David A. Stahl ◽  
Paul Yager

2010 ◽  
Vol 77 (4) ◽  
pp. 1536-1539 ◽  
Author(s):  
Nobuyasu Yamaguchi ◽  
Masashi Torii ◽  
Yuko Uebayashi ◽  
Masao Nasu

ABSTRACTA microfluidic device-based system for the rapid and semiautomated counting of bacteria in freshwater was fabricated and examined. Bacteria in groundwater and in potable water, as well as starvedEscherichia coliO157:H7 spiked in pond water, were able to be on-chip stained and enumerated within 1 h using this system.


2022 ◽  
Author(s):  
Xueying Zhao ◽  
Roseanne M Ford

In natural systems bacteria are exposed to many chemical stimulants; some attract chemotactic bacteria as they promote survival, while others repel bacteria because they inhibit survival. When faced with a mixture of chemoeffectors, it is not obvious which direction the population will migrate. Predicting this direction requires an understanding of how bacteria process information about their surroundings. We used a multiscale mathematical model to relate molecular level details of their two-component signaling system to the probability that an individual cell changes its swimming direction to the chemotactic velocity of a bacterial population. We used a microfluidic device designed to maintain a constant chemical gradient to compare model predictions to experimental observations. We obtained parameter values for the multiscale model of Escherichia coli chemotaxis to individual stimuli, α-methylaspartate and nickel ion, separately. Then without any additional fitting parameters, we predicted the response to chemoeffector mixtures. Migration of E. coli toward α-methylaspartate was modulated by adding increasing concentrations of nickel ion. Thus, the migration direction was controlled by the relative concentrations of competing chemoeffectors in a predictable way. This study demonstrated the utility of a multiscale model to predict the migration direction of bacteria in the presence of competing chemoeffectors.


The Analyst ◽  
2020 ◽  
Vol 145 (21) ◽  
pp. 6831-6845 ◽  
Author(s):  
Matthias Geissler ◽  
Daniel Brassard ◽  
Liviu Clime ◽  
Ana Victoria C. Pilar ◽  
Lidija Malic ◽  
...  

Automated workflow that starts with a colony isolate and ends with a fluorescence signal on a DNA microarray.


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