Gene-specific DNA methylation in occupational exposure to VOC mixtures

2016 ◽  
Vol 259 ◽  
pp. S18
Author(s):  
O. Jiménez Garza
2019 ◽  
Vol 28 (15) ◽  
pp. 2477-2485 ◽  
Author(s):  
Diana A van der Plaat ◽  
Judith M Vonk ◽  
Natalie Terzikhan ◽  
Kim de Jong ◽  
Maaike de Vries ◽  
...  

Abstract Many workers are daily exposed to occupational agents like gases/fumes, mineral dust or biological dust, which could induce adverse health effects. Epigenetic mechanisms, such as DNA methylation, have been suggested to play a role. We therefore aimed to identify differentially methylated regions (DMRs) upon occupational exposures in never-smokers and investigated if these DMRs associated with gene expression levels. To determine the effects of occupational exposures independent of smoking, 903 never-smokers of the LifeLines cohort study were included. We performed three genome-wide methylation analyses (Illumina 450 K), one per occupational exposure being gases/fumes, mineral dust and biological dust, using robust linear regression adjusted for appropriate confounders. DMRs were identified using comb-p in Python. Results were validated in the Rotterdam Study (233 never-smokers) and methylation-expression associations were assessed using Biobank-based Integrative Omics Study data (n = 2802). Of the total 21 significant DMRs, 14 DMRs were associated with gases/fumes and 7 with mineral dust. Three of these DMRs were associated with both exposures (RPLP1 and LINC02169 (2×)) and 11 DMRs were located within transcript start sites of gene expression regulating genes. We replicated two DMRs with gases/fumes (VTRNA2-1 and GNAS) and one with mineral dust (CCDC144NL). In addition, nine gases/fumes DMRs and six mineral dust DMRs significantly associated with gene expression levels. Our data suggest that occupational exposures may induce differential methylation of gene expression regulating genes and thereby may induce adverse health effects. Given the millions of workers that are exposed daily to occupational exposures, further studies on this epigenetic mechanism and health outcomes are warranted.


Author(s):  
Diana van der Plaat ◽  
Kim de Jong ◽  
Judith Vonk ◽  
Cleo van Diemen ◽  
Ivana Nedeljkovic ◽  
...  

2018 ◽  
Vol 75 (6) ◽  
pp. 427-435 ◽  
Author(s):  
Diana A van der Plaat ◽  
Kim de Jong ◽  
Maaike de Vries ◽  
Cleo C van Diemen ◽  
Ivana Nedeljković ◽  
...  

ObjectivesOccupational pesticide exposure is associated with a wide range of diseases, including lung diseases, but it is largely unknown how pesticides influence airway disease pathogenesis. A potential mechanism might be through epigenetic mechanisms, like DNA methylation. Therefore, we assessed associations between occupational exposure to pesticides and genome-wide DNA methylation sites.Methods1561 subjects of LifeLines were included with either no (n=1392), low (n=108) or high (n=61) exposure to any type of pesticides (estimated based on current or last held job). Blood DNA methylation levels were measured using Illumina 450K arrays. Associations between pesticide exposure and 420 938 methylation sites (CpGs) were assessed using robust linear regression adjusted for appropriate confounders. In addition, we performed genome-wide stratified and interaction analyses by gender, smoking and airway obstruction status, and assessed associations between gene expression and methylation for genome-wide significant CpGs (n=2802).ResultsIn total for all analyses, high pesticide exposure was genome-wide significantly (false discovery rate P<0.05) associated with differential DNA methylation of 31 CpGs annotated to 29 genes. Twenty of these CpGs were found in subjects with airway obstruction. Several of the identified genes, for example, RYR1, ALLC, PTPRN2, LRRC3B, PAX2 and VTRNA2-1, are genes previously linked to either pesticide exposure or lung-related diseases. Seven out of 31 CpGs were associated with gene expression levels.ConclusionsWe show for the first time that occupational exposure to pesticides is genome-wide associated with differential DNA methylation. Further research should reveal whether this differential methylation plays a role in the airway disease pathogenesis induced by pesticides.


2015 ◽  
Vol 56 (8) ◽  
pp. 684-693 ◽  
Author(s):  
Huiqi Li ◽  
Maria Hedmer ◽  
Tomasz Wojdacz ◽  
Mohammad Bakhtiar Hossain ◽  
Christian H. Lindh ◽  
...  

2019 ◽  
Vol 39 (9) ◽  
pp. 1311-1319 ◽  
Author(s):  
Xing‐xu Zhang ◽  
Zhen He ◽  
Bin Feng ◽  
Hua Shao

2018 ◽  
Author(s):  
Jinming Zhang ◽  
Luoping Zhang ◽  
Roel Vermeulen ◽  
Wei Hu ◽  
Bryan A. Bassig ◽  
...  

2018 ◽  
Vol 39 (7) ◽  
pp. 869-878 ◽  
Author(s):  
Ayman Alhamdow ◽  
Christian Lindh ◽  
Jessika Hagberg ◽  
Pål Graff ◽  
Håkan Westberg ◽  
...  

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