Transcriptional profiling of Dermacentor variabilis (Acari: Ixodidae) provides insights into the role of the Haller's organ in spatial DEET recognition

2022 ◽  
Vol 13 (1) ◽  
pp. 101827
Author(s):  
Cody W Koloski ◽  
Bryan J. Cassone
Keyword(s):  
Transcriptional Profiling ◽  
Dermacentor Variabilis ◽  
Haller's Organ

scholarly journals Tick Ecdysteroid Hormone, Global Microbiota/Rickettsia Signaling in the Ovary versus Carcass during Vitellogenesis in Part-Fed (Virgin) American Dog Ticks, Dermacentor variabilis

2021 ◽  
Vol 9 (6) ◽  
pp. 1242
Author(s):  
Loganathan Ponnusamy ◽  
Haley Sutton ◽  
Robert D. Mitchell ◽  
Daniel E. Sonenshine ◽  
Charles S. Apperson ◽  
...  
Keyword(s):  
Hormonal Regulation ◽  
Natural Populations ◽  
Blood Feeding ◽  
Dermacentor Variabilis ◽  
Transovarial Transmission ◽  
Rickettsia Species ◽  
Adult Females ◽  
Dog Tick ◽  
Total Bacteria

The transovarial transmission of tick-borne bacterial pathogens is an important mechanism for their maintenance in natural populations and transmission, causing disease in humans and animals. The mechanism for this transmission and the possible role of tick hormones facilitating this process have never been studied. Injections of physiological levels of the tick hormone, 20-hydroxyecdysone (20E), into part-fed (virgin) adult females of the American dog tick, Dermacentor variabilis, attached to the host caused a reduction in density of Rickettsia montanensis in the carcass and an increase in the ovaries compared to buffer-injected controls. This injection initiates yolk protein synthesis and uptake by the eggs but has no effect on blood feeding. Francisella sp. and R. montanensis were the predominant bacteria based on the proportionality in the carcass and ovary. The total bacteria load increased in the carcass and ovaries, and bacteria in the genus Pseudomonas increased in the carcass after the 20E injection. The mechanism of how the Rickettsia species respond to changes in tick hormonal regulation needs further investigation. Multiple possible mechanisms for the proliferation of R. montanensis in the ovaries are proposed.

scholarly journals The MarR-Type Regulator PA3458 Is Involved in Osmoadaptation Control in Pseudomonas aeruginosa

2021 ◽  
Vol 22 (8) ◽  
pp. 3982
Author(s):  
Karolina Kotecka ◽  
Adam Kawalek ◽  
Kamil Kobylecki ◽  
Aneta Agnieszka Bartosik
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Binding Sites ◽  
Transcriptional Profiling ◽  
Mrna Level ◽  
Transcriptional Regulators ◽  
Resistance Mechanisms ◽  
Chronic Infections ◽  
Environmental Signals ◽  
Regulatory Systems

Pseudomonas aeruginosa is a facultative human pathogen, causing acute and chronic infections that are especially dangerous for immunocompromised patients. The eradication of P. aeruginosa is difficult due to its intrinsic antibiotic resistance mechanisms, high adaptability, and genetic plasticity. The bacterium possesses multilevel regulatory systems engaging a huge repertoire of transcriptional regulators (TRs). Among these, the MarR family encompasses a number of proteins, mainly acting as repressors, which are involved in response to various environmental signals. In this work, we aimed to decipher the role of PA3458, a putative MarR-type TR from P. aeruginosa. Transcriptional profiling of P. aeruginosa PAO1161 overexpressing PA3458 showed changes in the mRNA level of 133 genes; among them, 100 were down-regulated, suggesting the repressor function of PA3458. Concomitantly, ChIP-seq analysis identified more than 300 PA3458 binding sites in P. aeruginosa. The PA3458 regulon encompasses genes involved in stress response, including the PA3459–PA3461 operon, which is divergent to PA3458. This operon encodes an asparagine synthase, a GNAT-family acetyltransferase, and a glutamyl aminopeptidase engaged in the production of N-acetylglutaminylglutamine amide (NAGGN), which is a potent bacterial osmoprotectant. We showed that PA3458-mediated control of PA3459–PA3461 expression is required for the adaptation of P. aeruginosa growth in high osmolarity. Overall, our data indicate that PA3458 plays a role in osmoadaptation control in P. aeruginosa.

Transcriptional profiling reveals molecular basis and the role of arginine in response to low-pH stress in Pichia kudriavzevii

2019 ◽  
Author(s):  
Hao Ji ◽  
Xiameng Dong ◽  
Kailun Zhang ◽  
Libo Jin ◽  
Renyi Peng ◽  
...  
Keyword(s):  
Organic Acids ◽  
Molecular Basis ◽  
Transcriptional Profiling ◽  
Cell Aggregation ◽  
Membrane Lipid ◽  
Low Ph ◽  
Pichia Kudriavzevii ◽  
Ph Stress ◽  
Ph Conditions

Abstract BackgroundThe non-conventional yeast Pichia kudriavzevii possesses a unique ability to tolerate various environmental stresses particularly low-pH stress. Thus, it is considered to be a promising biotechnological host for the production of various organic acids under low-pH conditions. However, little is known about the low-pH stress response in P. kudriavzevii, which significantly restricts its future development. ResultsIn this study, P. kudriavzevii JLY1107 showed great tolerance to low-pH stress, but its cell aggregation upon acidic conditions is unfavorable for the development of low-pH fermentation. To explore the molecular basis, we conducted RNA-Seq to compare global gene expression in response to low-pH. Among the 429 differentially expressed genes, the genes associated with regulation of membrane lipid composition, filamentous growth and arginine metabolism were selected for in-depth discussions. The up-regulation of genes associated with arginine uptake and degradation suggests a potential role of arginine in response to low-pH strsss. We therefore present data supporting the hypothesis that P. kudriavzevii maintains intracellular homeostasis by using the ammonia produced by arginine catabolism. Furthermore, external addition of arginine significantly enhances growth and reduces cell aggregation of P. kudriavzevii under low-pH conditions.ConclusionsArginine was demonstrated to be a promising molecule for improving cell growth and preventing cell aggregation under extremely low-pH conditions. Our study is a step towards developing the non-conventional yeast P. kudriavzevii as a platform host for the production of organic acids under low-pH conditions.

scholarly journals Transcriptional profiling of the acute pulmonary inflammatory response induced by LPS: role of neutrophils

2010 ◽  
Vol 11 (1) ◽  
Author(s):  
Nejla Güngör ◽  
Jeroen LA Pennings ◽  
Ad M Knaapen ◽  
Roland K Chiu ◽  
Marco Peluso ◽  
...  
Keyword(s):  
Inflammatory Response ◽  
Transcriptional Profiling ◽  
Pulmonary Inflammatory Response

scholarly journals Role of Ndt80p in Sterol Metabolism Regulation and Azole Resistance in Candida albicans

2009 ◽  
Vol 8 (8) ◽  
pp. 1174-1183 ◽  
Author(s):  
Adnane Sellam ◽  
Faïza Tebbji ◽  
André Nantel
Keyword(s):  
Candida Albicans ◽  
Stress Responses ◽  
Efflux Pump ◽  
Transcriptional Profiling ◽  
Ergosterol Biosynthesis ◽  
Gene Promoters ◽  
Sterol Metabolism ◽  
Metabolism Regulation ◽  
Genome Wide

ABSTRACT The Ndt80p transcription factor modulates azole tolerance in Candida albicans by controlling the expression of the gene for the drug efflux pump Cdr1p. To date, the contribution of this transcriptional modulator to drug tolerance is not yet well understood. Here, we investigate the role of Ndt80p in mediating fluconazole tolerance by determining its genome-wide occupancy using chromatin immunoprecipitation coupled to high-density tiling arrays. Ndt80p was found to bind a large number of gene promoters with diverse biological functions. Gene ontology analysis of these Ndt80p targets revealed a significant enrichment in gene products related to the cell wall, carbohydrate metabolism, stress responses, hyphal development, multidrug transport, and the cell cycle. Ndt80p was found on the promoters of ergosterol biosynthesis genes, including on the azole target Erg11p. Additionally, expression profiling was used to identify fluconazole-responsive genes that require Ndt80p for their proper expression. We found that Ndt80p is crucial for the expression of numerous fluconazole-responsive genes, especially genes involved in ergosterol metabolism. Therefore, by combining genome-wide location and transcriptional profiling, we have characterized the Ndt80p fluconazole-dependent regulon and demonstrated the key role of this global transcriptional regulator in modulating sterol metabolism and drug resistance in C. albicans.

scholarly journals Immunosenescence in Choroidal Neovascularization (CNV)—Transcriptional Profiling of Naïve and CNV-Associated Retinal Myeloid Cells during Aging

2021 ◽  
Vol 22 (24) ◽  
pp. 13318
Author(s):  
Anja Schlecht ◽  
Adrian Thien ◽  
Julian Wolf ◽  
Gabriele Prinz ◽  
Hansjürgen Agostini ◽  
...  
Keyword(s):  
Choroidal Neovascularization ◽  
Transcriptional Profiling ◽  
Myeloid Cells ◽  
Age Related Macular Degeneration ◽  
Physiological Aging ◽  
Future Studies ◽  
Signature Genes ◽  
Age Related ◽  
Age Dependent

Immunosenescence is considered a possible factor in the development of age-related macular degeneration and choroidal neovascularization (CNV). However, age-related changes of myeloid cells (MCs), such as microglia and macrophages, in the healthy retina or during CNV formation are ill-defined. In this study, Cx3cr1-positive MCs were isolated by fluorescence-activated cell sorting from six-week (young) and two-year-old (old) Cx3cr1GFP/+ mice, both during physiological aging and laser-induced CNV development. High-throughput RNA-sequencing was performed to define the age-dependent transcriptional differences in MCs during physiological aging and CNV development, complemented by immunohistochemical characterization and the quantification of MCs, as well as CNV size measurements. These analyses revealed that myeloid cells change their transcriptional profile during both aging and CNV development. In the steady state, senescent MCs demonstrated an upregulation of factors contributing to cell proliferation and chemotaxis, such as Cxcl13 and Cxcl14, as well as the downregulation of microglial signature genes. During CNV formation, aged myeloid cells revealed a significant upregulation of angiogenic factors such as Arg1 and Lrg1 concomitant with significantly enlarged CNV and an increased accumulation of MCs in aged mice in comparison to young mice. Future studies need to clarify whether this observation is an epiphenomenon or a causal relationship to determine the role of immunosenescence in CNV formation.

Transcriptional profiling of tissue plasticity: role of shifts in gene expression and technical limitations

2005 ◽  
Vol 99 (2) ◽  
pp. 397-413 ◽  
Author(s):  
Martin Flück ◽  
Christoph Däpp ◽  
Silvia Schmutz ◽  
Ernst Wit ◽  
Hans Hoppeler
Keyword(s):  
Gene Expression ◽  
Skeletal Muscle ◽  
Expression Profiling ◽  
Transcriptional Profiling ◽  
Test System ◽  
Muscle Plasticity ◽  
Nucleolar Activity ◽  
Biological Outcomes ◽  
Rna And Dna

Reprogramming of gene expression has been recognized as a main instructive modality for the adjustments of tissues to various kinds of stress. The recent application of gene expression profiling has provided a powerful tool to elucidate the molecular pathways underlying such tissue remodeling. However, the biological interpretations of expression profiling results critically depend on normalization of transcript signals to mRNA standards before statistical evaluation. A hypothesis is proposed whereby the “fluctuating nature” of gene expression represents an inherent limitation of the test system used to quantify RNA levels. Misinterpretation of gene expression data occurs when RNA quantities are normalized to a subset of mRNAs that are subject to strong regulation. The contention of contradictory biological outcomes using different RNA-normalization schemes is demonstrated in two models of skeletal muscle plasticity with data from custom-designed microarrays and biochemical and ultrastructural evidence for correspondingly altered RNA content and nucleolar activity. The prevalence of these biological constraints is underlined by a literature survey in different models of tissue plasticity with emphasis on the unique malleability of skeletal muscle. Finally, recommendations on the optimal experimental layout are given to control biological and technical variability in microarray and RT-PCR studies. It is proposed to approach normalization of transcript signals by measuring total RNA and DNA content per sample weight and by correcting for concurrently estimated endogenous standards such as major ribosomal RNAs and spiked RNA and DNA species. This allows for later conversion to diverse tissue-relevant references and should improve the physiological interpretations of phenotypic plasticity.

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