Emergence of porcine epidemic diarrhea viruses with the novel S genes in Tibetan pigs in the Qinghai-Tibetan plateau in China

2019 ◽  
Vol 270 ◽  
pp. 197652 ◽  
Author(s):  
Sinan Qin ◽  
Chengzhe Hu ◽  
Danjiao Yang ◽  
Jianping Wu ◽  
Hua Yue ◽  
...  
2012 ◽  
pp. 99-113
Author(s):  
Dongfa Sun ◽  
Tingwen Xu ◽  
Guoping Zhang ◽  
Zhao Ling ◽  
Daokun Sun ◽  
...  
Keyword(s):  

2020 ◽  
Vol 20 (10) ◽  
pp. 6159-6175 ◽  
Author(s):  
Rui Li ◽  
Yilong Zhao ◽  
Wenhui Zhou ◽  
Ya Meng ◽  
Ziyu Zhang ◽  
...  

Abstract. We developed a two-stage model called the random-forest–generalised additive model (RF–GAM), based on satellite data, meteorological factors, and other geographical covariates, to predict the surface 8 h O3 concentrations across the remote Tibetan Plateau. The 10-fold cross-validation result suggested that RF–GAM showed excellent performance, with the highest R2 value (0.76) and lowest root-mean-square error (RMSE) (14.41 µg m−3), compared with other seven machine-learning models. The predictive performance of RF–GAM showed significant seasonal discrepancy, with the highest R2 value observed in summer (0.74), followed by winter (0.69) and autumn (0.67), and the lowest one in spring (0.64). Additionally, the unlearning ground-observed O3 data collected from open-access websites were applied to test the transferring ability of the novel model and confirmed that the model was robust in predicting the surface 8 h O3 concentration during other periods (R2=0.67, RMSE = 25.68 µg m−3). RF–GAM was then used to predict the daily 8 h O3 level over the Tibetan Plateau during 2005–2018 for the first time. It was found that the estimated O3 concentration displayed a slow increase, from 64.74±8.30 µg m−3 to 66.45±8.67 µg m−3 from 2005 to 2015, whereas it decreased from the peak to 65.87±8.52 µg m−3 during 2015–2018. Besides this, the estimated 8 h O3 concentrations exhibited notable spatial variation, with the highest values in some cities of the northern Tibetan Plateau, such as Huangnan (73.48±4.53 µg m−3) and Hainan (72.24±5.34 µg m−3), followed by the cities in the central region, including Lhasa (65.99±7.24 µg m−3) and Shigatse (65.15±6.14 µg m−3), and the lowest O3 concentration occurred in a city of the southeastern Tibetan Plateau called Aba (55.17±12.77 µg m−3). Based on the 8 h O3 critical value (100 µg m−3) provided by the World Health Organization (WHO), we further estimated the annual mean nonattainment days over the Tibetan Plateau. It should be noted that most of the cities on the Tibetan Plateau had excellent air quality, while several cities (e.g. Huangnan, Haidong, and Guoluo) still suffered from more than 40 nonattainment days each year, which should be given more attention in order to alleviate local O3 pollution. The results shown herein confirm that the novel hybrid model improves the prediction accuracy and can be applied to assess the potential health risk, particularly in remote regions with few monitoring sites.


Author(s):  
AYanfang LAN ◽  
B Peng SHANG ◽  
Jiakui LI ◽  
Yangzom CHAMBA

To investigate the seroprevalence of Streptococcus suis (S. suis) in Tibetan Pigs on Tibetan plateau of China, a total of 454 serum samples were collected from December 2014 to January 2015 and analyzed by enzyme linked immunosorbent assay (ELISA) for Streptococcus antibodies. The seroprevalence was found to be 61.79% (95% CI 55.4-67.9), 57.81% (95% CI 50.5-64.9) and 62.50% (95% CI 35.4-84.8) in Tibetan counties of Nyingchi, Mainling and Gongbo'gvamda respectively; and 61.34% (95% CI 54.1-68.2) of females and 59.23 % (95% CI 53.0-65.3) of males were found to be positive for S. suis. These findings suggested a high seroprevalence of S. suis in Tibet pigs triggering a public concern.


2020 ◽  
Vol 33 (4) ◽  
pp. 531-538
Author(s):  
Qianyun Ge ◽  
Caixia Gao ◽  
Yuan Cai ◽  
Ting Jiao ◽  
Jinqiang Quan ◽  
...  

Objective: Evidence from previous reports indicates that pig domestication in East Asia mainly occurred in the Mekong region and the middle and downstream regions of the Yangtze River. Further research identified two new origin centers for domestic pigs in the Tibetan Plateau and the islands of Southeast Asia. However, due to the small sample size of Tibetan pigs, details of the origin and spread of Tibetan pigs has not yet been established.Methods: We analyzed mitochondrial DNA control region (D-loop) variation in 1,201 individuals from nine Tibetan pig populations across five provinces. Comprehensive Tibetan pig samples were taken to perform the most detailed analysis of Tibetan pigs to date.Results: The result indicate that Rkaze pigs had the lowest level of diversity, while Changdu pigs had the highest diversity. Interestingly, these two populations were both in the Tibetan Plateau area. If we calculate diversity in terms of each province, the Tibetan Plateau area had the lowest diversity, while the Chinese province of Gansu had the highest diversity. Diversity gradient analysis of major haplotypes suggested three domestication centers of Tibetan pigs in the Tibetan Plateau and the Chinese provinces of Gansu and Yunnan.Conclusion: We found two new domestication centers for Tibetan pigs. One is in the Chinese province of Gansu, which lies in the upstream region of the Yellow River, and the other is in the Chinese province of Yunnan.


2017 ◽  
Vol 32 (4) ◽  
pp. 298-306 ◽  
Author(s):  
Zhe Zeng ◽  
Ting-Ting Li ◽  
Xin Jin ◽  
Fu-Hu Peng ◽  
Nian-Hua Song ◽  
...  

2018 ◽  
Vol 51 (2) ◽  
pp. 491-494 ◽  
Author(s):  
Xing Gao ◽  
Lihong Zhang ◽  
Xiong Jiang ◽  
Khalid Mehmood ◽  
Lei Wang ◽  
...  

2019 ◽  
Vol 164 (12) ◽  
pp. 2943-2951 ◽  
Author(s):  
Kelei Zhou ◽  
Qun Zhou ◽  
Danjiao Yang ◽  
Hua Yue ◽  
Cheng Tang ◽  
...  

2020 ◽  
Author(s):  
Rui Li ◽  
Yilong Zhao ◽  
Ya Meng ◽  
Wenhui Zhou ◽  
Ziyu Zhang ◽  
...  

Abstract. We developed a two-stage model named random forest-generalized additive model (RF-GAM) based on satellite data, meteorological factors, and other geographical covariates to predict the surface 8-h O3 concentration across the remote Tibetan Plateau. The 10-fold cross-validation result suggested that RF-GAM showed the excellent performance with the highest R2 value (0.76) and lowest root mean square error (RMSE) (14.41 μg/m3) compared with other seven machine learning models. The predictive performance of RF-GAM model showed significantly seasonal discrepency with the highest R2 value observed in summer (0.74), followed by winter (0.69) and autumn (0.67), and the lowest one in spring (0.64). Additionally, the unlearning ground-observed O3 data collected from open websites were applied to test the transferring ability of the novel model, and confirmed that the model was robust to predict the surface 8-h O3 concentration during other periods (R2 = 0.67, RMSE = 25.68 μg/m3). RF-GAM was then used to predict the daily 8-h O3 level over Tibetan Plateau during 2005–2018 for the first time. It was found that the estimated O3 concentration displayed a slow increase from 64.74 ± 8.30 μg/m3 to 66.45 ± 8.67 μg/m3 2005 through 2015, whereas it decreased from the peak to 65.87 ± 8.52 μg/m3 during 2015–2018. Besides, the estimated 8-h O3 concentrations exhibited notably spatial variation with the highest values in some cities of North Tibetan Plateau such as Huangnan (73.48 ± 4.53 μg/m3) and Hainan (72.24 ± 5.34 μg/m3), followed by the cities in the central region including Lhasa (65.99 ± 7.24 μg/m3) and Shigatse (65.15 ± 6.14 μg/m3), and the lowest one in some cities of Southeast Tibetan Plateau such as Aba (55.17 ± 12.77 μg/m3). Based on the 8-h O3 critical value (100 μg/m3) scheduled by World Health Organization (WHO), we further estimated the annually mean nonattainment days over Tibetan Plateau this period. It should be noted that most of the cities in Tibetan Plateau shared with the excellent air quality, while several cities (e.g., Huangnan, Haidong, and Guoluo) still suffered from more than 40 nonattainment days each year, which should be paid more attention to alleviate local O3 pollution. The result shown herein confirms the novel hybrid model improves the prediction accuracy and can be applied to assess the potential health risk, particularly in the remote regions with sparse monitoring sites.


2021 ◽  
Vol 10 (17) ◽  
Author(s):  
Juanli Yun ◽  
Wenbin Du

Wetlands in the Tibetan Plateau play a crucial role in global carbon cycling. Here, we report the metagenome-assembled genomes (MAGs) of two hydrogen-dependent methanogens from the Zoige wetland of the Tibetan Plateau. The novel species belong to Methanomassiliicoccales , the seventh euryarchaeal methanogenic order.


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