Application of Gray Level Co-Occurrence Matrix Analysis as a New Method for Enzyme Histochemistry Quantification

2019 ◽  
Vol 25 (3) ◽  
pp. 690-698 ◽  
Author(s):  
Milorad Dragić ◽  
Marina Zarić ◽  
Nataša Mitrović ◽  
Nadežda Nedeljković ◽  
Ivana Grković

AbstractEnzyme histochemistry is a valuable histological method which provides a connection between morphology, activity, and spatial localization of investigated enzymes. Even though the method relies purely on arbitrary evaluations performed by the human eye, it is still wildly accepted and used in histo(patho)logy. Texture analysis emerged as an excellent tool for image quantification of subtle differences reflected in both spatial discrepancies and gray level values of pixels. The current study of texture analysis utilizes the gray-level co-occurrence matrix as a method for quantification of differences between ecto-5′-nucleotidase activities in healthy hippocampal tissue and tissue with marked neurodegeneration. We used the angular second moment, contrast (CON), correlation, inverse difference moment (INV), and entropy for texture analysis and receiver operating characteristic analysis with immunoblot and qualitative assessment of enzyme histochemistry as a validation. Our results strongly argue that co-occurrence matrix analysis could be used for the determination of fine differences in the enzyme activities with the possibility to ascribe those differences to regions or specific cell types. In addition, it emerged that INV and CON are especially useful parameters for this type of enzyme histochemistry analysis. We concluded that texture analysis is a reliable method for quantification of this descriptive technique, thus removing biases and adding it a quantitative dimension.


2017 ◽  
Vol 22 (3) ◽  
pp. 036011 ◽  
Author(s):  
Takayoshi Kobayashi ◽  
Durga Sundaram ◽  
Kazuaki Nakata ◽  
Hiromichi Tsurui


Genetics ◽  
1992 ◽  
Vol 130 (4) ◽  
pp. 771-790 ◽  
Author(s):  
D G Morton ◽  
J M Roos ◽  
K J Kemphues

Abstract Specification of some cell fates in the early Caenorhabditis elegans embryo is mediated by cytoplasmic localization under control of the maternal genome. Using nine newly isolated mutations, and two existing mutations, we have analyzed the role of the maternally expressed gene par-4 in cytoplasmic localization. We recovered seven new par-4 alleles in screens for maternal effect lethal mutations that result in failure to differentiate intestinal cells. Two additional par-4 mutations were identified in noncomplementation screens using strains with a high frequency of transposon mobility. All 11 mutations cause defects early in development of embryos produced by homozygous mutant mothers. Analysis with a deficiency in the region indicates that it33 is a strong loss-of-function mutation. par-4(it33) terminal stage embryos contain many cells, but show no morphogenesis, and are lacking intestinal cells. Temperature shifts with the it57ts allele suggest that the critical period for both intestinal differentiation and embryo viability begins during oogenesis, about 1.5 hr before fertilization, and ends before the four-cell stage. We propose that the primary function of the par-4 gene is to act as part of a maternally encoded system for cytoplasmic localization in the first cell cycle, with par-4 playing a particularly important role in the determination of intestine. Analysis of a par-4; par-2 double mutant suggests that par-4 and par-2 gene products interact in this system.





2021 ◽  
pp. 1-7
Author(s):  
Lazar M. Davidovic ◽  
Jelena Cumic ◽  
Stefan Dugalic ◽  
Sreten Vicentic ◽  
Zoran Sevarac ◽  
...  

Gray-level co-occurrence matrix (GLCM) analysis is a contemporary and innovative computational method for the assessment of textural patterns, applicable in almost any area of microscopy. The aim of our research was to perform the GLCM analysis of cell nuclei in Saccharomyces cerevisiae yeast cells after the induction of sublethal cell damage with ethyl alcohol, and to evaluate the performance of various machine learning (ML) models regarding their ability to separate damaged from intact cells. For each cell nucleus, five GLCM parameters were calculated: angular second moment, inverse difference moment, GLCM contrast, GLCM correlation, and textural variance. Based on the obtained GLCM data, we applied three ML approaches: neural network, random trees, and binomial logistic regression. Statistically significant differences in GLCM features were observed between treated and untreated cells. The multilayer perceptron neural network had the highest classification accuracy. The model also showed a relatively high level of sensitivity and specificity, as well as an excellent discriminatory power in the separation of treated from untreated cells. To the best of our knowledge, this is the first study to demonstrate that it is possible to create a relatively sensitive GLCM-based ML model for the detection of alcohol-induced damage in Saccharomyces cerevisiae cell nuclei.



Author(s):  
B.V. DHANDRA ◽  
VIJAYALAXMI.M. B ◽  
GURURAJ MUKARAMBI ◽  
MALLIKARJUN. HANGARGE

Writer identification problem is one of the important area of research due to its various applications and is a challenging task. The major research on writer identification is based on handwritten English documents with text independent and dependent. However, there is no significant work on identification of writers based on Kannada document. Hence, in this paper, we propose a text-independent method for off-line writer identification based on Kannada handwritten scripts. By observing each individual’s handwriting as a different texture image, a set of features based on Discrete Cosine Transform, Gabor filtering and gray level co-occurrence matrix, are extracted from preprocessed document image blocks. Experimental results demonstrate that the Gabor energy features are more potential than the DCTs and GLCMs based features for writer identification from 20 people.



2021 ◽  
pp. 1-8
Author(s):  
Jovana Paunovic ◽  
Danijela Vucevic ◽  
Tatjana Radosavljevic ◽  
Biserka Vukomanovic Djurdjevic ◽  
Sanja Stankovic ◽  
...  

Abstract



Author(s):  
N. Agani ◽  
S. A. R. Abu–Bakar ◽  
S. H. Sheikh Salleh

Analisa tekstur adalah satu sifat penting untuk mengenal pasti permukaan dan objek daripada imej perubatan dan pelbagai imej lain. Penyelidikan ini telah membangunkan sebuah algoritma untuk menganalisa tekstur dengan menggunakan imej perubatan dari echocardiography untuk mengenal pasti jantung yang disyaki mengalami myocardial infarction. Di sini penggabungan daripada teknik wavelet extension transform dan teknik gray level co–occurrence matrix adalah dicadangkan. Di dalam penyelidikan ini wavelet extension transform digunakan untuk menghasilkan sebuah imej hampiran yang mempunyai resolusi yang lebih besar. Gray level co–occurrence matrix yang dihitung untuk setiap sub–band digunakan untuk mencirikan empat sifat vektor: entropy, contrast, energy (angular second moment) dan homogeneity (invers difference moment). Pengklasifikasian yang digunakan di dalam penyelidikan ini adalah pengklasifikasian Mahalanobis distance. Kaedah yang telah dicadangkan diuji dengan data klinikal dari imej echocardiography untuk 17 orang pesakit. Untuk setiap pesakit, contoh tisu diambil daripada kawasan yang disyaki infarcted dan kawasan non–infarcted (normal). Untuk setiap pesakit, 8 bingkai imej yang dipisahkan oleh sela waktu tertentu di mana 5 kawasan normal dan 5 kawasan disyaki myocardial infarction berukuran 16×16 piksel akan dianalisa. Hasil pengklasifikasian telah dicapai dengan ketepatan 91.32%. Kata kunci: Analisa tekstur, wavelet extension, co–occurrence matrix, myocardial infarction, sifat vektor Texture analysis is an important characteristic for surface and object identification from medical images and many other types of images. This research has developed an algorithm for texture analysis using medical images do trained from echocardiography in identifying heart with suspected myocardial infarction problem. A set of combination of wavelet extension transform with gray level co–occurrence matrix is proposed. In this work, wavelet extension transform is used to form an image approximation with higher resolution. The gray level co–occurrence matrices computed for each subband are used to extract four feature vectors: entropy, contrast, energy (angular second moment) and homogeneity (inverse difference moment). The classifier used in this work is the Mahalanobis distance classifier. The method is tested with clinical data from echocardiography images of 17 patients. For each patient, tissue samples are taken from suspected infarcted area as well as from non–infarcted (normal) area. For each patient, 8 frames separated by some time interval are used and for each frame, 5 normal regions and 5 suspected myocardial infarction regions of 16×16 pixel size are analyzed. The classification performance achieved 91.32% accuracy. Key words: Texture analysis, wavelet extension, co–occurrence matrix, myocardial infarction, feature vector



2017 ◽  
Vol 32 (1) ◽  
pp. e22175 ◽  
Author(s):  
Keigo Kono ◽  
Ruka Hayata ◽  
Satoru Murakami ◽  
Mai Yamamoto ◽  
Maiko Kuroki ◽  
...  




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