Exclusion of a Transmembrane-Type Peptide from Ordered-Lipid Domains (Rafts) Detected by Fluorescence Quenching:  Extension of Quenching Analysis to Account for the Effects of Domain Size and Domain Boundaries†

Biochemistry ◽  
2003 ◽  
Vol 42 (42) ◽  
pp. 12376-12390 ◽  
Author(s):  
Michael E. Fastenberg ◽  
Hidehiko Shogomori ◽  
Xiaolian Xu ◽  
Deborah A. Brown ◽  
Erwin London
Author(s):  
Y. H. Liu

Ordered Ni3Fe crystals possess a LI2 type superlattice similar to the Cu3Au structure. The difference in slip behavior of the superlattice as compared with that of a disordered phase has been well established. Cottrell first postulated that the increase in resistance for slip in the superlattice structure is attributed to the presence of antiphase domain boundaries. Following Cottrell's domain hardening mechanism, numerous workers have proposed other refined models also involving the presence of domain boundaries. Using the anomalous X-ray diffraction technique, Davies and Stoloff have shown that the hardness of the Ni3Fe superlattice varies with the domain size. So far, no direct observation of antiphase domain boundaries in Ni3Fe has been reported. Because the atomic scattering factors of the elements in NijFe are so close, the superlattice reflections are not easily detected. Furthermore, the domain configurations in NioFe are thought to be independent of the crystallographic orientations.


2019 ◽  
Vol 15 (5) ◽  
pp. 486-495 ◽  
Author(s):  
Li-Xin Peng ◽  
Xue-Hui Liu ◽  
Bo Lu ◽  
Si-Ming Liao ◽  
Feng Zhou ◽  
...  

Background:The polysialic acid (polySia) is a unique carbohydrate polymer produced on the surface Of Neuronal Cell Adhesion Molecule (NCAM) in a number of cancer cells, and strongly correlates with the migration and invasion of tumor cells and with aggressive, metastatic disease and poor clinical prognosis in the clinic. Its synthesis is catalyzed by two polysialyltransferases (polySTs), ST8SiaIV (PST) and ST8SiaII (STX). Selective inhibition of polySTs, therefore, presents a therapeutic opportunity to inhibit tumor invasion and metastasis due to NCAM polysialylation. Heparin has been found to be effective in inhibiting the ST8Sia IV activity, but no clear molecular rationale. It has been found that polysialyltransferase domain (PSTD) in polyST plays a significant role in influencing polyST activity, and thus it is critical for NCAM polysialylation based on the previous studies.Objective:To determine whether the three different types of heparin (unfractionated hepain (UFH), low molecular heparin (LMWH) and heparin tetrasaccharide (DP4)) is bound to the PSTD; and if so, what are the critical residues of the PSTD for these binding complexes?Methods:Fluorescence quenching analysis, the Circular Dichroism (CD) spectroscopy, and NMR spectroscopy were used to determine and analyze interactions of PSTD-UFH, PSTD-LMWH, and PSTD-DP4.Results:The fluorescence quenching analysis indicates that the PSTD-UFH binding is the strongest and the PSTD-DP4 binding is the weakest among these three types of the binding; the CD spectra showed that mainly the PSTD-heparin interactions caused a reduction in signal intensity but not marked decrease in α-helix content; the NMR data of the PSTD-DP4 and the PSTDLMWH interactions showed that the different types of heparin shared 12 common binding sites at N247, V251, R252, T253, S257, R265, Y267, W268, L269, V273, I275, and K276, which were mainly distributed in the long α-helix of the PSTD and the short 3-residue loop of the C-terminal PSTD. In addition, three residues K246, K250 and A254 were bound to the LMWH, but not to DP4. This suggests that the PSTD-LMWH binding is stronger than the PSTD-DP4 binding, and the LMWH is a more effective inhibitor than DP4.Conclusion:The findings in the present study demonstrate that PSTD domain is a potential target of heparin and may provide new insights into the molecular rationale of heparin-inhibiting NCAM polysialylation.


2017 ◽  
Vol 71 (11) ◽  
pp. 2512-2518 ◽  
Author(s):  
Ryan P. Ferrie ◽  
Gregory E. Hewitt ◽  
Bruce D. Anderson

Fluorescence quenching was used to investigate the interaction of six fluoroquinolones with humic acid. Static quenching was observed for the binding of ciprofloxacin, enoxacin, fleroxacin, levofloxacin, norfloxacin, and ofloxacin to humic acid. The equilibrium binding constants were found from Stern–Volmer plots of the data. The quenching experiments were repeated over a temperature range of 25–45 ℃ and van’t Hoff plots were generated. From these linear plots, thermodynamic values were calculated for Δ H, Δ G, and Δ S for each of the fluoroquinolones. The equilibrium binding constants were found to be <1 for all the antibiotics studied. The calculated ΔH values were all negative and ranged from −9.5 to −27.6 kJ/mol. The high water solubility of the antibiotics and low ΔH of binding suggests that the antibiotics will be transported easily through the environment. Finally, whether the fluoroquinolones are in a protonated, deprotonated, or partially protonated state is found to correlate to the strength of binding to humic acid.


Luminescence ◽  
2018 ◽  
Vol 33 (5) ◽  
pp. 933-940 ◽  
Author(s):  
P. Bhavya ◽  
Raveendra Melavanki ◽  
Raviraj Kusanur ◽  
Kalpana Sharma ◽  
V. T. Muttannavar ◽  
...  

2021 ◽  
Author(s):  
Xiaotian Lu ◽  
Feng Zeng ◽  
Shuyin Wei ◽  
Rui Gao ◽  
Abliz Abdurahman ◽  
...  

Abstract Microplastics (MPs) have a great potential to adsorb heavy metal pollutants such as Pb2+ and the dissolved organic matter(DOM) in the aquatic environment will affect this adsorption behavior. In this study, batch experiments were performed to investigate the adsorption characteristics of Pb2+ onto polystyrene microplastics (PSMPs) in the presence and absence of HA(a kind of representative DOM). The adsorption kinetics of Pb2+ onto PSMPs conformed to the pseudo-second order model, and the adsorption isotherms were well fitted by the Langmuir model. With the increase of HA concentration, the Pb2+ adsorption onto PSMPs increased. Site energy distribution analysis showed that the presence of HA increased the adsorption site energy of PSMPs, thus enhancing the adsorption capacity for Pb2+. The fluorescence quenching analysis of HA further indicated that part of HA were adsorbed onto PSMPs, which increased additional binding sites on the surface of PSMPs. This was attributed to the abundant functional groups that could react with Pb2+ of HA. The pH and ionic strength of solution changed the structure of HA and the adsorption sites of PSMPs, which influenced the adsorption capacity of PSMPs for Pb2+. This study illustrated the effect of HA on the process and mechanism of Pb2+ adsorption onto PSMPs, and provided more information for the evaluation of environmental behavior and toxicological effects of microplastics in aquatic environments.


1996 ◽  
Vol 425 ◽  
Author(s):  
George S. Attard ◽  
Mark Edgar ◽  
James W. Emsley ◽  
Christine G. Göltner

AbstractA series of simple deuterium NMR experiments are used to investigate the surfaces of differently structured silicas by studying the sorption of deuteriated solvents. Two mesoporous silicas (MCM-41 and H1-silica), which display hexagonally arranged channels of uniform diameter are studied, as well as amorphous column silica. The deuterium NMR lineshape strongly depends on the anisotropic environment of the adsorbed deuteriated species (D2O, benzene-d6, pyridine-d5). This allows differentiation between probe molecules adsorbed to the internal surface (anisotropic) and to the external surface (isotropic, non-ordered surface of particles). Solvents adsorbed within the channels of the silica nanostructure retain a degree of orientational order while moving on the surface, thus producing a Pake pattern. In contrast, solvents adsorbed on the outside of the ordered channels and on domain boundaries retain no orientational order while moving on the surface, therefore giving rise to a singlet in the deuterium NMR spectrum. This phenomenon allows to judge and compare the qualities of hexagonal ceramic nanostructures. The results show that H1-silica exhibits a significantly higher degree of order, due to a larger domain size, than MCM-41.


2000 ◽  
Vol 275 (30) ◽  
pp. 22645-22649 ◽  
Author(s):  
William Garzon-Rodriguez ◽  
Art Vega ◽  
Marisa Sepulveda-Becerra ◽  
Saskia Milton ◽  
David A. Johnson ◽  
...  

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