scholarly journals A Conformation Change in the Carboxyl Terminus of Alzheimer's Aβ(1–40) Accompanies the Transition from Dimer to Fibril as Revealed by Fluorescence Quenching Analysis

2000 ◽  
Vol 275 (30) ◽  
pp. 22645-22649 ◽  
Author(s):  
William Garzon-Rodriguez ◽  
Art Vega ◽  
Marisa Sepulveda-Becerra ◽  
Saskia Milton ◽  
David A. Johnson ◽  
...  
2019 ◽  
Vol 15 (5) ◽  
pp. 486-495 ◽  
Author(s):  
Li-Xin Peng ◽  
Xue-Hui Liu ◽  
Bo Lu ◽  
Si-Ming Liao ◽  
Feng Zhou ◽  
...  

Background:The polysialic acid (polySia) is a unique carbohydrate polymer produced on the surface Of Neuronal Cell Adhesion Molecule (NCAM) in a number of cancer cells, and strongly correlates with the migration and invasion of tumor cells and with aggressive, metastatic disease and poor clinical prognosis in the clinic. Its synthesis is catalyzed by two polysialyltransferases (polySTs), ST8SiaIV (PST) and ST8SiaII (STX). Selective inhibition of polySTs, therefore, presents a therapeutic opportunity to inhibit tumor invasion and metastasis due to NCAM polysialylation. Heparin has been found to be effective in inhibiting the ST8Sia IV activity, but no clear molecular rationale. It has been found that polysialyltransferase domain (PSTD) in polyST plays a significant role in influencing polyST activity, and thus it is critical for NCAM polysialylation based on the previous studies.Objective:To determine whether the three different types of heparin (unfractionated hepain (UFH), low molecular heparin (LMWH) and heparin tetrasaccharide (DP4)) is bound to the PSTD; and if so, what are the critical residues of the PSTD for these binding complexes?Methods:Fluorescence quenching analysis, the Circular Dichroism (CD) spectroscopy, and NMR spectroscopy were used to determine and analyze interactions of PSTD-UFH, PSTD-LMWH, and PSTD-DP4.Results:The fluorescence quenching analysis indicates that the PSTD-UFH binding is the strongest and the PSTD-DP4 binding is the weakest among these three types of the binding; the CD spectra showed that mainly the PSTD-heparin interactions caused a reduction in signal intensity but not marked decrease in α-helix content; the NMR data of the PSTD-DP4 and the PSTDLMWH interactions showed that the different types of heparin shared 12 common binding sites at N247, V251, R252, T253, S257, R265, Y267, W268, L269, V273, I275, and K276, which were mainly distributed in the long α-helix of the PSTD and the short 3-residue loop of the C-terminal PSTD. In addition, three residues K246, K250 and A254 were bound to the LMWH, but not to DP4. This suggests that the PSTD-LMWH binding is stronger than the PSTD-DP4 binding, and the LMWH is a more effective inhibitor than DP4.Conclusion:The findings in the present study demonstrate that PSTD domain is a potential target of heparin and may provide new insights into the molecular rationale of heparin-inhibiting NCAM polysialylation.


2017 ◽  
Vol 71 (11) ◽  
pp. 2512-2518 ◽  
Author(s):  
Ryan P. Ferrie ◽  
Gregory E. Hewitt ◽  
Bruce D. Anderson

Fluorescence quenching was used to investigate the interaction of six fluoroquinolones with humic acid. Static quenching was observed for the binding of ciprofloxacin, enoxacin, fleroxacin, levofloxacin, norfloxacin, and ofloxacin to humic acid. The equilibrium binding constants were found from Stern–Volmer plots of the data. The quenching experiments were repeated over a temperature range of 25–45 ℃ and van’t Hoff plots were generated. From these linear plots, thermodynamic values were calculated for Δ H, Δ G, and Δ S for each of the fluoroquinolones. The equilibrium binding constants were found to be <1 for all the antibiotics studied. The calculated ΔH values were all negative and ranged from −9.5 to −27.6 kJ/mol. The high water solubility of the antibiotics and low ΔH of binding suggests that the antibiotics will be transported easily through the environment. Finally, whether the fluoroquinolones are in a protonated, deprotonated, or partially protonated state is found to correlate to the strength of binding to humic acid.


RSC Advances ◽  
2015 ◽  
Vol 5 (89) ◽  
pp. 73290-73300 ◽  
Author(s):  
Bao Tu ◽  
Zhi-Feng Chen ◽  
Zhi-Juan Liu ◽  
Rong-Rong Li ◽  
Yu Ouyang ◽  
...  

The influence of functional groups on the interaction has been studied detailed here; fluorescence quenching degrees and the conformation change are considered through multiple methods; molecular docking has been introduced to verify related results.


Luminescence ◽  
2018 ◽  
Vol 33 (5) ◽  
pp. 933-940 ◽  
Author(s):  
P. Bhavya ◽  
Raveendra Melavanki ◽  
Raviraj Kusanur ◽  
Kalpana Sharma ◽  
V. T. Muttannavar ◽  
...  

2021 ◽  
Author(s):  
Xiaotian Lu ◽  
Feng Zeng ◽  
Shuyin Wei ◽  
Rui Gao ◽  
Abliz Abdurahman ◽  
...  

Abstract Microplastics (MPs) have a great potential to adsorb heavy metal pollutants such as Pb2+ and the dissolved organic matter(DOM) in the aquatic environment will affect this adsorption behavior. In this study, batch experiments were performed to investigate the adsorption characteristics of Pb2+ onto polystyrene microplastics (PSMPs) in the presence and absence of HA(a kind of representative DOM). The adsorption kinetics of Pb2+ onto PSMPs conformed to the pseudo-second order model, and the adsorption isotherms were well fitted by the Langmuir model. With the increase of HA concentration, the Pb2+ adsorption onto PSMPs increased. Site energy distribution analysis showed that the presence of HA increased the adsorption site energy of PSMPs, thus enhancing the adsorption capacity for Pb2+. The fluorescence quenching analysis of HA further indicated that part of HA were adsorbed onto PSMPs, which increased additional binding sites on the surface of PSMPs. This was attributed to the abundant functional groups that could react with Pb2+ of HA. The pH and ionic strength of solution changed the structure of HA and the adsorption sites of PSMPs, which influenced the adsorption capacity of PSMPs for Pb2+. This study illustrated the effect of HA on the process and mechanism of Pb2+ adsorption onto PSMPs, and provided more information for the evaluation of environmental behavior and toxicological effects of microplastics in aquatic environments.


1995 ◽  
Vol 22 (2) ◽  
pp. 209 ◽  
Author(s):  
U Schreiber ◽  
H Hormann ◽  
C Neubauer ◽  
C Klughammer

The general principles involved in chlorophyll fluorescence quenching analysis by the saturation pulse method are presented, outlining the rationale for using the empirical fluorescence parameters Fv/Fm and Fv/Fm' as indices for the photosystem II (PSII) photochemical quantum yield, ΦII, in the dark-adapted or illuminated states, respectively. The relationship between ΦII and the quantum yield of photosynthetic electron transport is linear over a wide range of quantum flux densities. However, there is a fraction of PSII contributing approximately 30% to maximal quantum yield, which is closed at rather low quantum flux densities, while at the same time there is only a small drop in ΔF/Fm'. The details of Fm and Fm' determination by application of saturating light are critically examined, with emphasis on the situation in algae where the fluorescence rise to the peak leLel is followed by a rapid decline. For this purpose, the rapid induction kinetics upon onset of strong continuous illumination are investigated. Dark-adapted samples show two distinct intermediate fluorescence levels, I1 and I2, in the polyphasic rise from the O to the P level. The I1 level separates a biphasic 'photochemical' rise, which also can be induced by a saturating single turnover flash, from several 'thermal' phases, induction of which requires multiple turnovers at PSII. Arguments are put forward favouring the I2 level for assessment of Fm or Fm', on which calculation of Fv/Fm or ΔF/Fm' is based. It is shown that although an assessment based on the I1 level, as practised by the so-called pump- and-probe method, does lead to a consistent underestimation of ΔF/Fm, in many cases similar information as with I2 determination is obtained.


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