scholarly journals Nelumbo genome database, an integrative resource for gene expression and variants of Nelumbo nucifera

2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Hui Li ◽  
Xingyu Yang ◽  
Yue Zhang ◽  
Zhiyan Gao ◽  
Yuting Liang ◽  
...  
Keyword(s):  
Gene Expression ◽  
Plant Species ◽  
Aquatic Plant ◽  
Molecular Breeding ◽  
Nelumbo Nucifera ◽  
Sequence Analyses ◽  
Genome Database ◽  
Future Studies ◽  
Sacred Lotus ◽  
Coexpression Networks

AbstractSacred lotus (Nelumbo nucifera, or lotus) is one of the most widely grown aquatic plant species with important uses, such as in water gardening and in vegetable and herbal medicine. A public genomic database of lotus would facilitate studies of lotus and other aquatic plant species. Here, we constructed an integrative database: the Nelumbo Genome Database (NGD, http://nelumbo.biocloud.net). This database is a collection of the most updated lotus genome assembly and contains information on both gene expression in different tissues and coexpression networks. In the NGD, we also integrated genetic variants and key traits from our 62 newly sequenced lotus cultivars and 26 previously reported cultivars, which are valuable for lotus germplasm studies. As applications including BLAST, BLAT, Primer, Annotation Search, Variant and Trait Search are deployed, users can perform sequence analyses and gene searches via the NGD. Overall, the valuable genomic resources provided in the NGD will facilitate future studies on population genetics and molecular breeding of lotus.

Absorption and Translocation of Florpyrauxifen-benzyl in Ten Aquatic Plant Species

Weed Science ◽  
2021 ◽  
pp. 1-21
Author(s):  
Erika J. Haug ◽  
Khalied A. Ahmed ◽  
Travis W. Gannon ◽  
Rob J. Richardson
Keyword(s):  
North Carolina ◽  
Plant Species ◽  
Aquatic Plant ◽  
Myriophyllum Spicatum ◽  
Hydrilla Verticillata ◽  
State University ◽  
North Carolina State University ◽  
Eurasian Watermilfoil ◽  
Body Of Knowledge ◽  
Aquatic Herbicide

Abstract Additional active ingredients are needed for use in aquatic systems in order to respond to new threats or treatment scenarios, enhance selectivity, reduce use rates, and to mitigate the risk of herbicide-resistance. Florpyrauxifen-benzyl is a new synthetic auxin developed for use as an aquatic herbicide. A study was conducted at North Carolina State University, in which 10 µg L−1 of 25% radiolabeled florpyrauxifen-benzyl was applied to the isolated shoot tissue of ten different aquatic plant species in order to elucidate absorption and translocation patterns in these species. Extremely high levels of shoot absorption were observed for all species and uptake was rapid. Highest shoot absorptions were observed for crested floatingheart [Nymphoides cristata (Roxb.) Kuntze] (A192 =20 µg g−1), dioecious hydrilla [Hydrilla verticillata (L.f.) Royle] (A192 =25.3 µg g−1), variable watermilfoil (Myriophyllum heterophylum Michx.) (A192 =40.1 µg g−1) and Eurasian watermilfoil (Myriophyllum spicatum L.) (A192 =25.3 µg g−1). Evidence of translocation was observed in all rooted species tested with the greatest translocation observed in N. cristata (1.28 µg g-1 at 192 HAT). The results of this study add to the growing body of knowledge surrounding the behavior of this newly registered herbicide within aquatic plants.

scholarly journals Comparative Transcriptome Atlases Reveal Altered Gene Expression Modules between Two Cleomaceae C3 and C4 Plant Species

2014 ◽  
Vol 26 (8) ◽  
pp. 3243-3260 ◽  
Author(s):  
Canan Külahoglu ◽  
Alisandra K. Denton ◽  
Manuel Sommer ◽  
Janina Maß ◽  
Simon Schliesky ◽  
...  
Keyword(s):  
Gene Expression ◽  
Plant Species ◽  
Comparative Transcriptome ◽  
C4 Plant ◽  
Altered Gene Expression ◽  
Altered Gene

Sustainable valorization of seeds from eight aquatic plant species as a source of oil and lipophilic bioactive compounds

2021 ◽  
Author(s):  
Elise Sipeniece ◽  
Inga Mišina ◽  
Ying Qian ◽  
Anna Grygier ◽  
Natalia Sobieszczańska ◽  
...  
Keyword(s):  
Plant Species ◽  
Bioactive Compounds ◽  
Aquatic Plant

scholarly journals Terrestrial Morphotypes of Aquatic Plants Display Improved Seed Germination to Deal with Dry or Low-Rainfall Periods

Plants ◽  
2021 ◽  
Vol 10 (4) ◽  
pp. 741
Author(s):  
Rocío Fernández-Zamudio ◽  
Pablo García-Murillo ◽  
Carmen Díaz-Paniagua
Keyword(s):  
Seed Germination ◽  
Plant Species ◽  
Aquatic Plants ◽  
Aquatic Plant ◽  
Population Persistence ◽  
Temporary Ponds ◽  
Percent Germination ◽  
Plant Assemblages ◽  
Viable Seeds

In temporary ponds, seed germination largely determines how well aquatic plant assemblages recover after dry periods. Some aquatic plants have terrestrial morphotypes that can produce seeds even in dry years. Here, we performed an experiment to compare germination patterns for seeds produced by aquatic and terrestrial morphotypes of Ranunculus peltatus subsp. saniculifolius over the course of five inundation events. During the first inundation event, percent germination was higher for terrestrial morphotype seeds (36.1%) than for aquatic morphotype seeds (6.1%). Seed germination peaked for both groups during the second inundation event (terrestrial morphotype: 47%; aquatic morphotype: 34%). Even after all five events, some viable seeds had not yet germinated (terrestrial morphotype: 0.6%; aquatic morphotype: 5%). We also compared germination patterns for the two morphotypes in Callitriche brutia: the percent germination was higher for terrestrial morphotype seeds (79.5%) than for aquatic morphotype seeds (41.9%). Both aquatic plant species use two complementary strategies to ensure population persistence despite the unpredictable conditions of temporary ponds. First, plants can produce seeds with different dormancy periods that germinate during different inundation periods. Second, plants can produce terrestrial morphotypes, which generate more seeds during dry periods, allowing for re-establishment when conditions are once again favorable.

scholarly journals Mitogenome Analysis of Four Lamiinae Species (Coleoptera: Cerambycidae) and Gene Expression Responses by Monochamus alternatus When Infected with the Parasitic Nematode, Bursaphelenchus mucronatus

Insects ◽  
2021 ◽  
Vol 12 (5) ◽  
pp. 453
Author(s):  
Zi-Yi Zhang ◽  
Jia-Yin Guan ◽  
Yu-Rou Cao ◽  
Xin-Yi Dai ◽  
Kenneth B. Storey ◽  
...  
Keyword(s):  
Gene Expression ◽  
Phylogenetic Trees ◽  
Mitochondrial Gene ◽  
Mitochondrial Protein ◽  
Pine Wilt Disease ◽  
Bursaphelenchus Xylophilus ◽  
Monochamus Alternatus ◽  
Genome Database ◽  
Protein Coding ◽  
Nd5 Gene

We determined the mitochondrial gene sequence of Monochamus alternatus and three other mitogenomes of Lamiinae (Insect: Coleoptera: Cerambycidae) belonging to three genera (Aulaconotus, Apriona and Paraglenea) to enrich the mitochondrial genome database of Lamiinae and further explore the phylogenetic relationships within the subfamily. Phylogenetic trees of the Lamiinae were built using the Bayesian inference (BI) and maximum likelihood (ML) methods and the monophyly of Monochamus, Anoplophora, and Batocera genera was supported. Anoplophora chinensis, An. glabripennis and Aristobia reticulator were closely related, suggesting they may also be potential vectors for the transmission of the pine wood pathogenic nematode (Bursaphelenchus xylophilus) in addition to M. alternatus, a well-known vector of pine wilt disease. There is a special symbiotic relationship between M. alternatus and Bursaphelenchus xylophilus. As the native sympatric sibling species of B. xylophilus, B. mucronatus also has a specific relationship that is often overlooked. The analysis of mitochondrial gene expression aimed to explore the effect of B. mucronatus on the energy metabolism of the respiratory chain of M. alternatus adults. Using RT-qPCR, we determined and analyzed the expression of eight mitochondrial protein-coding genes (COI, COII, COIII, ND1, ND4, ND5, ATP6, and Cty b) between M. alternatus infected by B. mucronatus and M. alternatus without the nematode. Expression of all the eight mitochondrial genes were up-regulated, particularly the ND4 and ND5 gene, which were up-regulated by 4–5-fold (p < 0.01). Since longicorn beetles have immune responses to nematodes, we believe that their relationship should not be viewed as symbiotic, but classed as parasitic.

Reestablishment of Cabomba schwartzii (Cabombaceae), an aquatic plant species endemic to the Brazilian Amazon

Phytotaxa ◽  
2018 ◽  
Vol 367 (3) ◽  
pp. 245 ◽  
Author(s):  
TIAGO D. M. BARBOSA ◽  
RAFAELA J. TRAD ◽  
MIKLOS M. BAJAY ◽  
MARIA I. ZUCCHI ◽  
MARIA DO CARMO E. DO AMARAL
Keyword(s):  
Geographical Distribution ◽  
Plant Species ◽  
Genetic Study ◽  
Aquatic Plant ◽  
Brazilian Amazon ◽  
Distinct Species ◽  
Morphological Characters ◽  
Species Description ◽  
Dichotomous Key ◽  
Herbarium Collections

Cabomba schwartzii was described by Rataj in 1977. The species discovered in the Brazilian Amazon was said to differ from other Cabomba species in having two sepals, two petals and a lobate petal base. According to the 1991 study of Ørgaard, C. schwartzii is similar to C. aquatica in other morphological characters (C. aquatica has flowers with three sepals and three petals) and since variation in number of floral parts is common in the genus, Ørgaard synonymized both species. After an analysis of C. schwartzii type material, other herbarium collections and location of four populations (two with C. schwartzii characteristics and two with C. aquatica characteristics), we conducted an integrated morphological and genetic study to evaluate whether or not C. schwartzii is a distinct species from C. aquatica. The results reveal the species to be distinct from each other and therefore C. schwartzii should be reestablished. The floral formula for C. schwartzii is K2 C2 A2+2 G1, versus K3 C3 A3+3 G2 for C. aquatica. A detailed species description and the geographical distribution of C. schwartzii are presented with a dichotomous key to distinguish both species, together with illustrations.

scholarly journals Performance of aquatic plant species for phytoremediation of arsenic-contaminated water

2015 ◽  
Vol 7 (2) ◽  
pp. 889-896 ◽  
Author(s):  
Shivakshi Jasrotia ◽  
Arun Kansal ◽  
Aradhana Mehra
Keyword(s):  
Plant Species ◽  
Aquatic Plant ◽  
Contaminated Water

scholarly journals Insecticidal and Nematicidal Contributions of Mexican Flora in the Search for Safer Biopesticides

Molecules ◽  
2019 ◽  
Vol 24 (5) ◽  
pp. 897 ◽  
Author(s):  
Beatriz Hernández-Carlos ◽  
Marcela Gamboa-Angulo
Keyword(s):  
Plant Species ◽  
Biological Effects ◽  
New Products ◽  
Sustainable Use ◽  
Nematode Species ◽  
Insect Species ◽  
Parasitic Nematodes ◽  
Plant Metabolites ◽  
Future Studies ◽  
Pest Insects

Plant metabolites have been used for many years to control pests in animals and to protect crops. Here, we reviewed the available literature, looking for the species of Mexican flora for which extracts and metabolites have shown activity against pest insects and parasitic nematodes of agricultural importance, as well as against nematodes that parasitize domestic cattle. From 1996 to 2018, the search for novel and eco-friendly biopesticides has resulted in the identification of 114 species belonging to 36 botanical families of Mexican plants with reported biological effects on 20 insect species and seven nematode species. Most plant species with detected pesticide properties belong to the families Asteraceae, Fabaceae, and Lamiaceae. Eighty-six metabolites have been identified as pesticidal active principles, and most have been terpenoids. Therefore, the continuation and intensification of this area of research is very important to contribute to the generation of new products that will provide alternatives to conventional pesticide agents. In addition, future studies will contribute to the recognition and dissemination of the importance of propagating plant species for their conservation and sustainable use.

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