scholarly journals The host generalist phytopathogenic fungus Sclerotinia sclerotiorum differentially expresses multiple metabolic enzymes on two different plant hosts

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Jefferson Allan ◽  
Roshan Regmi ◽  
Matthew Denton-Giles ◽  
Lars G. Kamphuis ◽  
Mark C. Derbyshire
Keyword(s):  
Secondary Metabolites ◽  
Sclerotinia Sclerotiorum ◽  
Major Facilitator Superfamily ◽  
Differentially Expressed ◽  
Phytopathogenic Fungus ◽  
Broad Host Range ◽  
In Planta ◽  
Diverse Range ◽  
Plant Hosts

AbstractSclerotinia sclerotiorum is a necrotrophic fungal pathogen that infects upwards of 400 plant species, including several economically important crops. The molecular processes that underpin broad host range necrotrophy are not fully understood. This study used RNA sequencing to assess whether S. sclerotiorum genes are differentially expressed in response to infection of the two different host crops canola (Brassica napus) and lupin (Lupinus angustifolius). A total of 10,864 of the 11,130 genes in the S. sclerotiorum genome were expressed. Of these, 628 were upregulated in planta relative to in vitro on at least one host, suggesting involvement in the broader infection process. Among these genes were predicted carbohydrate-active enzymes (CAZYmes) and secondary metabolites. A considerably smaller group of 53 genes were differentially expressed between the two plant hosts. Of these host-specific genes, only six were either CAZymes, secondary metabolites or putative effectors. The remaining genes represented a diverse range of functional categories, including several associated with the metabolism and efflux of xenobiotic compounds, such as cytochrome P450s, metal-beta-lactamases, tannases and major facilitator superfamily transporters. These results suggest that S. sclerotiorum may regulate the expression of detoxification-related genes in response to phytotoxins produced by the different host species. To date, this is the first comparative whole transcriptome analysis of S. sclerotiorum during infection of different hosts.

scholarly journals Analysis of Differentially Expressed Sclerotinia Sclerotiorum Genes During the Interaction With Moderately Resistant and Highly Susceptible Chickpea Lines

2021 ◽  
Author(s):  
Virginia Mwape ◽  
Fredrick Mobegi ◽  
Roshan Regmi ◽  
Toby Newman ◽  
Lars Kamphuis ◽  
...  
Keyword(s):  
Sclerotinia Sclerotiorum ◽  
Reduction Process ◽  
Metabolic Process ◽  
Differentially Expressed ◽  
Transcriptional Analysis ◽  
Sclerotinia Stem Rot ◽  
In Planta ◽  
Developmental Factors ◽  
Moderately Resistant

Abstract Background: Sclerotinia sclerotiorum, the cause of Sclerotinia stem rot (SSR), is a host generalist necrotrophic fungus that can cause major yield losses in chickpea (Cicer arietinum) production. This study used RNA sequencing to conduct a timecourse transcriptional analysis of S. sclerotiorum gene expression during chickpea infection. The study explored S. sclerotiorum pathogenicity and developmental factors employed during chickpea infection. Results: During infection of moderately resistant and highly susceptible chickpea lines, 9,491 and 10,487 S. sclerotiorum genes, respectively, were significantly differentially expressed relative to in vitro. Analysis of the upregulated genes revealed enrichment of Gene Ontology biological processes, such as oxidation-reduction process, metabolic process, carbohydrate metabolic process, response to stimulus, and signal transduction. Several gene functional categories were upregulated in planta, including carbohydrate-active enzymes, secondary metabolite biosynthesis clusters, transcription factors and candidate secreted effectors. Differences in S. sclerotiorum genes expressed on varieties with different levels of susceptibility were also observed. Conclusion: These findings provide a framework for a better understanding of S. sclerotiorum interactions with hosts of varying susceptibility levels. Here, we report for the first time on the S. sclerotiorum transcriptome during chickpea infection, which could be important for further studies on this pathogen's molecular biology.

scholarly journals Analysis of differentially expressed Sclerotinia sclerotiorum genes during the interaction with moderately resistant and highly susceptible chickpea lines

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Virginia W. Mwape ◽  
Fredrick M. Mobegi ◽  
Roshan Regmi ◽  
Toby E. Newman ◽  
Lars G. Kamphuis ◽  
...  
Keyword(s):  
Sclerotinia Sclerotiorum ◽  
Time Course ◽  
Reduction Process ◽  
Metabolic Process ◽  
Differentially Expressed ◽  
Transcriptional Analysis ◽  
Sclerotinia Stem Rot ◽  
In Planta ◽  
Moderately Resistant

Abstract Background Sclerotinia sclerotiorum, the cause of Sclerotinia stem rot (SSR), is a host generalist necrotrophic fungus that can cause major yield losses in chickpea (Cicer arietinum) production. This study used RNA sequencing to conduct a time course transcriptional analysis of S. sclerotiorum gene expression during chickpea infection. It explores pathogenicity and developmental factors employed by S. sclerotiorum during interaction with chickpea. Results During infection of moderately resistant (PBA HatTrick) and highly susceptible chickpea (Kyabra) lines, 9491 and 10,487 S. sclerotiorum genes, respectively, were significantly differentially expressed relative to in vitro. Analysis of the upregulated genes revealed enrichment of Gene Ontology biological processes, such as oxidation-reduction process, metabolic process, carbohydrate metabolic process, response to stimulus, and signal transduction. Several gene functional categories were upregulated in planta, including carbohydrate-active enzymes, secondary metabolite biosynthesis clusters, transcription factors and candidate secreted effectors. Differences in expression of four S. sclerotiorum genes on varieties with different levels of susceptibility were also observed. Conclusion These findings provide a framework for a better understanding of S. sclerotiorum interactions with hosts of varying susceptibility levels. Here, we report for the first time on the S. sclerotiorum transcriptome during chickpea infection, which could be important for further studies on this pathogen’s molecular biology.

Antifungal activity and biological characteristics of the novel fungicide quinofumelin against Sclerotinia sclerotiorum

Plant Disease ◽  
2021 ◽  
Author(s):  
Xian Tao ◽  
Huahua Zhao ◽  
Haorong Xu ◽  
Zhongke Li ◽  
Jian-Xin Wang ◽  
...  
Keyword(s):  
Antifungal Activity ◽  
Sclerotinia Sclerotiorum ◽  
Plant Pathogens ◽  
Cross Resistance ◽  
Broad Host Range ◽  
In Planta ◽  
Control Efficacy ◽  
Worldwide Distribution ◽  
Chemical Fungicides

Sclerotinia sclerotiorum is a devastating plant pathogen with a broad host range and worldwide distribution. The application of chemical fungicides is a primary strategy for controlling this pathogen. However, under the high selective pressure of chemical fungicides, fungicide resistance has emerged and gradually increased, resulting in the failure to control S. sclerotiorum in the field. Quinofumelin is a novel quinoline fungicide, but its antifungal activities against plant pathogens have been rarely reported. Here, we determined the antifungal activity of quinofumelin against S. sclerotiorum in vitro and in planta. The EC50 values ranged from 0.0004 to 0.0059 μg mL-1 with a mean EC50 of 0.0017 ± 0.0009 μg mL-1 and were normally distributed (P=0.402). In addition, no cross-resistance was observed between quinofumelin and other fungicides, dimethachlone, boscalid, or carbendazim, which are commonly used to manage S. sclerotiorum. Quinofumelin did not affect glycerol and oxalic acid production of either carbendazim-sensitive or -resistant isolates. Moreover, quinofumelin exhibited excellent protective, curative, and translaminar activity against S. sclerotiorum on oilseed rape leaves. Protective activity was higher than curative activity. Interestingly, quinofumelin inhibited the formation of the infection cushion in S. sclerotiorum, which may contribute to the control efficacy of quinofumelin against S. sclerotiorum in the field. Our findings indicate that quinofumelin has excellent control efficacy against S. sclerotiorum in vitro and in planta as compared with the currently extensively used fungicides and could be used to manage carbendazim- and dimethachlone-resistance in S. sclerotiorum in the field.

scholarly journals Expression of the ToxA and PtrPf2 genes of the phytopathogenic fungus Pyrenophora tritici-repentis at the beginning of the infection process

2019 ◽  
Author(s):  
Nina V. Mironenko ◽  
Alexandra S. Orina ◽  
Nadezhda M. Kovalenko
Keyword(s):  
Transcription Factor ◽  
Wheat Variety ◽  
Infection Process ◽  
Phytopathogenic Fungus ◽  
In Planta ◽  
Effector Gene ◽  
Pyrenophora Tritici Repentis ◽  
Wheat Leaves ◽  
Necrotrophic Effector

This study shows that the necrotrophic effector gene ToxA is differentially expressed in isolates of P. tritici-repentis fungus at different time periods after inoculation of the wheat variety Glenlea which has the gene Tsn1 controlling sensitivity to the necrosis inducing toxin Ptr ToxA. Two P. tritici-repentis isolates with different ability to cause necrosis on the leaves of Glenlea variety (nec + and nec-) and with different expression level of ToxA and gene of factor transcription PtrPf2 in vitro were used for analysis. Isolates of P. tritici-repentis are characterized by the differential expression of ToxA in planta. The expression of the ToxA gene in P. tritici-repentis ToxA+ isolates significantly increased when infected the wheat leaves compared to ToxA expression results obtained in vitro. The levels of ToxA expression in both isolates differed significantly after 24, 48 and 96 hours after inoculation, however, the dynamics of the trait change over time were similar. However, the highest ToxA expression in the virulent (nec+) isolate in contrast with the avirulent (nec-) isolate was observed at a point of 48 hours. Whereas the expression of regulating transcription factor PtrPf2 in planta differed imperceptibly from expression in vitro throughout the observation period. Obviously, the role of the fungal transcription factor in regulating the effector gene expression weakens in planta, and other mechanisms regulating the expression of pathogen genes at the biotrophic stage of the disease develop.

scholarly journals Chemical composition and in vitro inhibitory effects of essential oils from fruit peel of three Citrus species and limonene on mycelial growth of Sclerotinia sclerotiorum

2020 ◽  
Vol 80 (2) ◽  
pp. 460-464 ◽  
Author(s):  
A. L. B. Dias ◽  
W. C. Sousa ◽  
H. R. F. Batista ◽  
C. C. F. Alves ◽  
E. L. Souchie ◽  
...  
Keyword(s):  
Essential Oils ◽  
Sclerotinia Sclerotiorum ◽  
Mycelial Growth ◽  
Major Constituent ◽  
Citrus Species ◽  
Fruit Peel ◽  
Diverse Range ◽  
Citrus Peel ◽  
Fungus Growth

Abstract Essential oils (EO) from aromatic and medicinal plants generally perform a diverse range of biological activities because they have several active constituents that work in different mechanisms of action. EO from Citrus peel have an impressive range of food and medicinal uses, besides other applications. EO from Citrus reticulata, C. sinensis and C. deliciosa were extracted from fruit peel and analyzed by GC-MS. The major constituent of EO under evaluation was limonene, whose concentrations were 98.54%, 91.65% and 91.27% for C. sinensis, C. reticulata and C. deliciosa, respectively. The highest potential of inhibition of mycelial growth was observed when the oil dose was 300 μL. Citrus oils inhibited fungus growth in 82.91% (C. deliciosa), 65.82% (C. sinensis) and 63.46% (C. reticulata). Anti-Sclerotinia sclerotiorum activity of 90% pure limonene and at different doses (20, 50, 100, 200 and 300 μL) was also investigated. This monoterpene showed to be highly active by inhibiting 100% fungus growth even at 200 and 300 μL doses. This is the first report of the in vitro inhibitory effect of natural products from these three Citrus species and its results show that there is good prospect of using them experimentally to control S. sclerotiorum, in both greenhouse and field conditions.

scholarly journals Genome-wide alternative splicing profiling in the fungal plant pathogen Sclerotinia sclerotiorum during the colonization of diverse host families

2020 ◽  
Author(s):  
Heba M. M. Ibrahim ◽  
Stefan Kusch ◽  
Marie Didelon ◽  
Sylvain Raffaele
Keyword(s):  
Alternative Splicing ◽  
Sclerotinia Sclerotiorum ◽  
Plant Pathogen ◽  
Host Plants ◽  
Higher Plants ◽  
Pathogenic Fungus ◽  
Differentially Expressed ◽  
Cell Protein ◽  
In Planta ◽  
Alternative Transcripts

AbstractSclerotinia sclerotiorum is a notorious generalist plant pathogen that threatens more than 600 host plants including wild and cultivated species. The molecular bases underlying the broad compatibility of S. sclerotiorum with its hosts is not fully elucidated. In contrast to higher plants and animals, alternative splicing (AS) is not well studied in plant pathogenic fungi. AS is a common regulated cellular process that increases cell protein and RNA diversity. In this study, we annotated spliceosome genes in the genome of S. sclerotiorum and characterized their expression in vitro and during the colonization of six host species. Several spliceosome genes were differentially expressed in planta, suggesting that AS was altered during infection. Using stringent parameters, we identified 1,487 S. sclerotiorum genes differentially expressed in planta and exhibiting alternative transcripts. The most common AS events during the colonization of all plants were retained introns and alternative 3′ receiver site. We identified S. sclerotiorum genes expressed in planta for which (i) the relative accumulation of alternative transcripts varies according to the host being colonized and (ii) alternative transcripts harbor distinct protein domains. This notably included 42 genes encoding predicted secreted proteins showing high confidence AS events. This study indicates that AS events are taking place in the plant pathogenic fungus S. sclerotiorum during the colonization of host plants and could generate functional diversity in the repertoire of proteins secreted by S. sclerotiorum during infection.

scholarly journals A detailed in silico analysis of secondary metabolite biosynthesis clusters in the genome of the broad host range plant pathogenic fungus Sclerotinia sclerotiorum

2019 ◽  
Author(s):  
Carolyn Graham-Taylor ◽  
Lars G Kamphuis ◽  
Mark Derbyshire
Keyword(s):  
Secondary Metabolites ◽  
Host Range ◽  
Secondary Metabolite ◽  
Sclerotinia Sclerotiorum ◽  
Plant Pathogens ◽  
Pathogenic Fungus ◽  
Gene Clusters ◽  
Sequence Diversity ◽  
Broad Host Range ◽  
Data Set

Abstract Background The broad host range pathogen Sclerotinia sclerotiorum infects over 400 plant species and causes substantial yield losses in crops worldwide. Secondary metabolites are known to play important roles in the virulence of plant pathogens, but little is known about the secondary metabolite repertoire of S. sclerotiorum. In this study, we predicted secondary metabolite biosynthetic gene clusters in the genome of S. sclerotiorum and analysed their expression during infection of Brassica napus using an existing transcriptome data set. We also investigated their sequence diversity among a panel of 25 previously published S. sclerotiorum isolate genomes.Results We identified 80 putative secondary metabolite clusters. Over half of the clusters contained at least three transcriptionally coregulated genes. Comparative genomics revealed clusters homologous to clusters in the closely related plant pathogen Botrytis cinerea for production of carotenoids, hydroxamate siderophores, DHN melanin and botcinic acid. We also identified putative phytotoxin clusters that can potentially produce the polyketide sclerin and an epipolythiodioxopiperazine. Secondary metabolite clusters were enriched in subtelomeric genomic regions, and those containing paralogues showed a particularly strong association with repeats. The positional bias we identified was borne out by intraspecific comparisons that revealed putative secondary metabolite genes suffered more presence / absence polymorphisms and exhibited a significantly higher sequence diversity than other genes.Conclusions These data suggest that S. sclerotiorum produces numerous secondary metabolites during plant infection and that their gene clusters undergo enhanced rates of mutation, duplication and recombination in subtelomeric regions. The microevolutionary regimes leading to S. sclerotiorum secondary metabolite diversity have yet to be elucidated. Several potential phytotoxins documented in this study provide the basis for future functional analyses.

scholarly journals Potential of antimicrobial volatile organic compounds to control Sclerotinia sclerotiorum in bean seeds

2011 ◽  
Vol 46 (2) ◽  
pp. 137-142 ◽  
Author(s):  
Maurício Batista Fialho ◽  
Maria Heloisa Duarte de Moraes ◽  
Annelise Roberta Tremocoldi ◽  
Sérgio Florentino Pascholati
Keyword(s):  
Volatile Organic Compounds ◽  
Ethyl Acetate ◽  
Organic Compounds ◽  
Sclerotinia Sclerotiorum ◽  
Mycelial Growth ◽  
In Vitro Assays ◽  
Phytopathogenic Fungus ◽  
Volatile Organic ◽  
Ethyl Octanoate

The objective of this work was to evaluate the potential of an artificial mixture of volatile organic compounds (VOCs), produced by Saccharomyces cerevisiae, to control Sclerotinia sclerotiorum in vitro and in bean seeds. The phytopathogenic fungus was exposed, in polystyrene plates, to an artificial atmosphere containing a mixture of six VOCs formed by alcohols (ethanol, 3-methyl-1-butanol, 2-methyl-1-butanol and phenylethyl alcohol) and esters (ethyl acetate and ethyl octanoate), in the proportions found in the atmosphere naturally produced by yeast. Bean seeds artificially contamined with the pathogen were fumigated with the mixture of VOCs in sealed glass flasks for four and seven days. In the in vitro assays, the compounds 2-methyl-1-butanol and 3-methyl-1-butanol were the most active against S. sclerotiorum, completely inhibiting its mycelial growth at 0.8 µL mL-1, followed by the ethyl acetate, at 1.2 µL mL-1. Bean seeds fumigated with the VOCs at 3.5 µL mL-1 showed a 75% reduction in S. sclerotiorum incidence after four days of fumigation. The VOCs produced by S. cerevisiae have potential to control the pathogen in stored seeds.

Alternative and sustainable control of the fungus Sclerotinia sclerotiorum that causes white mold in soybeans

2021 ◽  
Author(s):  
Sergio E. Lemos da Silva ◽  
Kimberlly Soares Brito Bratifich ◽  
eloisa Teresa Corradini Santos
Keyword(s):  
Sclerotinia Sclerotiorum ◽  
Agricultural Production ◽  
Mycelial Growth ◽  
Direct Relationship ◽  
White Mold ◽  
Phytopathogenic Fungus ◽  
Environmental Damage ◽  
In Vitro Growth ◽  
Negative Effect

The Sclerotinia sclerotiorum is a phytopathogenic fungus that causes the White Mold of soybean, being responsible for losses of up to 100% in agricultural production. The objective of this work was to verify and analyze the effect of the raw aqueous extract (EBA) of ginger Zingiber officinalis on a strain of Sclerotinia Sclerotiorum isolated from soybean, cultivated and maintained in vitro in laboratory. The methodology consisted of a longitudinal study of the statistical analysis of the mycelial growth velocity index (MICV), after treatment of the mycelia with different concentrations of aqueous crude extract. The results showed a direct relationship between increasing concentration of EBA and a significant negative effect on the growth of scleroderia. It was possible to conclude that the antifungal activity of ginger EBA was able to inhibit the in vitro growth of Sclerotinia sclerotiorum, with potential protection of soybean crops; it can become a sustainable alternative in the control of this fungus, by decreasing the use of agrochemicals that cause damage to public health and environmental damage.

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