Linking genetic determinants with salinity tolerance and ion relationships in eggplant, tomato and pepper

AbstractThe Solanaceae family includes commercially important vegetable crops characterized by their relative sensitivity to salinity. Evaluation of 8 eggplant (Solanum melongena), 7 tomato (Solanum lycopersicum), and 8 pepper (Capsicum spp.) heirloom cultivars from different geographic regions revealed significant variation in salt tolerance. Relative fruit yield under salt treatment varied from 52 to 114% for eggplant, 56 to 84% for tomato, and 52 to 99% for pepper. Cultivars from all three crops, except Habanero peppers, restricted Na transport from roots to shoots under salinity. The high salt tolerance level showed a strong association with low leaf Na concentration. Additionally, the leaf K-salinity/K-control ratio was critical in determining the salinity tolerance of a genotype. Differences in relative yield under salinity were regulated by several component traits, which was consistent with the gene expression of relevant genes. Gene expression analyses using 12 genes associated with salt tolerance showed that, for eggplant and pepper, Na+ exclusion was a vital component trait, while sequestration of Na+ into vacuoles was critical for tomato plants. The high variability for salt tolerance found in heirloom cultivars helped characterize genotypes based on component traits of salt tolerance and will enable breeders to increase the salt tolerance of Solanaceae cultivars.

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Linking Genetic Determinants With Salinity Tolerance and Ion Relationships in Eggplant, Tomato, and Pepper

10.21203/rs.3.rs-622598/v1 ◽

2021 ◽

Author(s):

Donald L. Suarez ◽

Nydia Celis ◽

Jorge F.S. Ferreira ◽

Trevor Reynolds ◽

Devinder Sandhu

Keyword(s):

Gene Expression ◽

Salt Tolerance ◽

Salinity Tolerance ◽

Strong Association ◽

Solanum Melongena ◽

Relative Yield ◽

Relative Sensitivity ◽

Vegetable Crops ◽

Component Trait ◽

Component Traits

Abstract The Solanaceae family includes commercially important vegetable crops characterized by their relative sensitivity to salinity. Evaluation of 24 heirloom cultivars of eggplant (Solanum melongena), tomato (Solanum lycopersicum), and pepper (Capsicum spp.) from different geographic regions under salinity revealed significant variation in salt tolerance. Relative fruit yield under salt treatment varied from 52 to 114% for eggplant, 56 to 84% for tomato, and 52 to 99% for pepper. Cultivars from all three crops, except Habanero peppers (C. chinense), restricted Na transport from roots to shoots under salinity. The high salt tolerance level showed a strong association with low leaf Na concentration. Additionally, the K-salinity/K-control ratio was critical in determining the salinity tolerance of a genotype. Differences in relative yield under salinity were regulated by several component traits, which was consistent with the gene expression of relevant genes. Gene expression analyses using 12 genes associated with plant salt tolerance showed that, for eggplant and pepper, Na+ exclusion was a vital component trait, while sequestration of Na+ into vacuoles was critical for tomato plants. The high variability for salt tolerance found in heirloom cultivars helped characterize genotypes based on component traits of salt tolerance, enabling breeders to increase the salt tolerance of Solanaceae cultivars.

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Understanding salt tolerance mechanism using transcriptome profiling and de novo assembly of wild tomato Solanum chilense

Scientific Reports ◽

10.1038/s41598-020-72474-w ◽

2020 ◽

Vol 10 (1) ◽

Cited By ~ 1

Author(s):

S. P. Kashyap ◽

H. C. Prasanna ◽

Nishi Kumari ◽

Pallavi Mishra ◽

B. Singh

Keyword(s):

Gene Expression ◽

Salt Tolerance ◽

Signaling Pathways ◽

Salinity Stress ◽

Salinity Tolerance ◽

De Novo ◽

Expression Patterns ◽

Differentially Expressed ◽

Ros Scavenging ◽

Solanum Chilense

Abstract Soil salinity affects the plant growth and productivity detrimentally, but Solanum chilense, a wild relative of cultivated tomato (Solanum lycopersicum L.), is known to have exceptional salt tolerance. It has precise adaptations against direct exposure to salt stress conditions. Hence, a better understanding of the mechanism to salinity stress tolerance by S. chilense can be accomplished by comprehensive gene expression studies. In this study 1-month-old seedlings of S. chilense and S. lycopersicum were subjected to salinity stress through application of sodium chloride (NaCl) solution. Through RNA-sequencing here we have studied the differences in the gene expression patterns. A total of 386 million clean reads were obtained through RNAseq analysis using the Illumina HiSeq 2000 platform. Clean reads were further assembled de novo into a transcriptome dataset comprising of 514,747 unigenes with N50 length of 578 bp and were further aligned to the public databases. Genebank non-redundant (Nr), Viridiplantae, Gene Ontology (GO), KOG, and KEGG databases classification suggested enrichment of these unigenes in 30 GO categories, 26 KOG, and 127 pathways, respectively. Out of 265,158 genes that were differentially expressed in response to salt treatment, 134,566 and 130,592 genes were significantly up and down-regulated, respectively. Upon placing all the differentially expressed genes (DEG) in known signaling pathways, it was evident that most of the DEGs involved in cytokinin, ethylene, auxin, abscisic acid, gibberellin, and Ca2+ mediated signaling pathways were up-regulated. Furthermore, GO enrichment analysis was performed using REVIGO and up-regulation of multiple genes involved in various biological processes in chilense under salinity were identified. Through pathway analysis of DEGs, “Wnt signaling pathway” was identified as a novel pathway for the response to the salinity stress. Moreover, key genes for salinity tolerance, such as genes encoding proline and arginine metabolism, ROS scavenging system, transporters, osmotic regulation, defense and stress response, homeostasis and transcription factors were not only salt-induced but also showed higher expression in S. chilense as compared to S. lycopersicum. Thus indicating that these genes may have an important role in salinity tolerance in S. chilense. Overall, the results of this study improve our understanding on possible molecular mechanisms underlying salt tolerance in plants in general and tomato in particular.

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Application of SSR Technique for the Identification of Markers Linked to Salinity Tolerance in Rice

Progressive Agriculture ◽

10.3329/pa.v19i2.16929 ◽

2013 ◽

Vol 19 (2) ◽

pp. 57-65

Author(s):

MH Kabir ◽

MM Islam ◽

SN Begum ◽

AC Manidas

Keyword(s):

Salt Tolerance ◽

Ssr Markers ◽

Salinity Tolerance ◽

Seedling Stage ◽

Phenotypic Screening ◽

Salt Tolerant ◽

Marker Assisted Breeding ◽

Hydroponic System ◽

Rice Landrace ◽

Salt Susceptible

A cross was made between high yielding salt susceptible BINA variety (Binadhan-5) with salt tolerant rice landrace (Harkuch) to identify salt tolerant rice lines. Thirty six F3 rice lines of Binadhan-5 x Harkuch were tested for salinity tolerance at the seedling stage in hydroponic system using nutrient solution. In F3 population, six lines were found as salt tolerant and 10 lines were moderately tolerant based on phenotypic screening at the seedling stage. Twelve SSR markers were used for parental survey and among them three polymorphic SSR markers viz., OSR34, RM443 and RM169 were selected to evaluate 26 F3 rice lines for salt tolerance. With respect to marker OSR34, 15 lines were identified as salt tolerant, 9 lines were susceptible and 2 lines were heterozygous. While RM443 identified 3 tolerant, 14 susceptible and 9 heterozygous rice lines. Eight tolerant, 11 susceptible and 7 heterozygous lines were identified with the marker RM169. Thus the tested markers could be efficiently used for tagging salt tolerant genes in marker-assisted breeding programme.DOI: http://dx.doi.org/10.3329/pa.v19i2.16929 Progress. Agric. 19(2): 57 - 65, 2008

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Evaluation of salinity tolerance indices in North African barley accessions at reproductive stage

Czech Journal of Genetics and Plant Breeding ◽

10.17221/50/2017-cjgpb ◽

2019 ◽

Vol 55 (No. 2) ◽

pp. 61-69 ◽

Cited By ~ 3

Author(s):

Dorsaf Allel ◽

Anis BenAmar ◽

Mounawer Badri ◽

Chedly Abdelly

Keyword(s):

Salt Tolerance ◽

Grain Yield ◽

Salinity Tolerance ◽

Selection Criteria ◽

Reproductive Stage ◽

Shoot Biomass ◽

Salt Tolerant ◽

North African ◽

Grain Number ◽

Selection Indices

Soil salinity is one of the main factors limiting cereal productivity in worldwide agriculture. Exploitation of natural variation in local barley germplasm is an effective approach to overcome yield losses. Three gene pools of North African Hordeum vulgare L. grown in Tunisia, Algeria and Egypt were evaluated at the reproductive stage under control and saline conditions. Assessment of stress tolerance was monitored using morphological, yield-related traits and phenological parameters of reproductive organs showing significant genetic variation. High heritability and positive relationships were found suggesting that some traits associated with salt tolerance could be used as selection criteria. The phenotypic correlations revealed that vegetative traits including shoot biomass, tiller number and leaf number along with yield-related traits such as spike number, one spike dry weight, grain number/plant and grain number/spike were highly positively correlated with grain yield under saline conditions. Hence, these traits can be used as reliable selection criteria to improve barley grain yield. Keeping a higher shoot biomass and longer heading and maturity periods as well as privileged filling ability might contribute to higher grain production in barley and thus could be potential target traits in barley crop breeding toward improvement of salinity tolerance. Multiple selection indices revealed that salt tolerance trait index provided a better discrimination of barley landraces allowing selection of highly salt-tolerant and highly productive genotypes under severe salinity level. Effective evaluation of salt tolerance requires an integration of selection indices to successfully identify and characterize salt tolerant lines required for valuable exploitation in the management of salt-affected areas.

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Arabidopsis heat shock transcription factor HSFA7b positively mediates salt stress tolerance by binding to an E-box-like motif to regulate gene expression

Journal of Experimental Botany ◽

10.1093/jxb/erz261 ◽

2019 ◽

Vol 70 (19) ◽

pp. 5355-5374 ◽

Cited By ~ 11

Author(s):

Dandan Zang ◽

Jingxin Wang ◽

Xin Zhang ◽

Zhujun Liu ◽

Yucheng Wang

Keyword(s):

Gene Expression ◽

Transcription Factors ◽

Heat Shock ◽

Salt Tolerance ◽

Stress Responses ◽

Ion Homeostasis ◽

Cellulose Synthase ◽

Regulate Gene Expression ◽

E Box ◽

Regulate Gene

Abstract Plant heat shock transcription factors (HSFs) are involved in heat and other abiotic stress responses. However, their functions in salt tolerance are little known. In this study, we characterized the function of a HSF from Arabidopsis, AtHSFA7b, in salt tolerance. AtHSFA7b is a nuclear protein with transactivation activity. ChIP-seq combined with an RNA-seq assay indicated that AtHSFA7b preferentially binds to a novel cis-acting element, termed the E-box-like motif, to regulate gene expression; it also binds to the heat shock element motif. Under salt conditions, AtHSFA7b regulates its target genes to mediate serial physiological changes, including maintaining cellular ion homeostasis, reducing water loss rate, decreasing reactive oxygen species accumulation, and adjusting osmotic potential, which ultimately leads to improved salt tolerance. Additionally, most cellulose synthase-like (CSL) and cellulose synthase (CESA) family genes were inhibited by AtHSFA7b; some of them were randomly selected for salt tolerance characterization, and they were mainly found to negatively modulate salt tolerance. By contrast, some transcription factors (TFs) were induced by AtHSFA7b; among them, we randomly identified six TFs that positively regulate salt tolerance. Thus, AtHSFA7b serves as a transactivator that positively mediates salinity tolerance mainly through binding to the E-box-like motif to regulate gene expression.

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Study on browning mechanism of fresh-cut eggplant (Solanum melongena L.) based on metabolomics, enzymatic assays and gene expression

Scientific Reports ◽

10.1038/s41598-021-86311-1 ◽

2021 ◽

Vol 11 (1) ◽

Author(s):

Xiaohui Liu ◽

Aidong Zhang ◽

Jing Shang ◽

Zongwen Zhu ◽

Ye Li ◽

...

Keyword(s):

Gene Expression ◽

Fruits And Vegetables ◽

Solanum Melongena ◽

Downward Trend ◽

Glutathione Metabolism ◽

Phenylpropanoid Metabolism ◽

Kegg Pathways ◽

Maximum Value ◽

Cut Time ◽

Fresh Cut

AbstractEnzymatic browning is one of the crucial problems compromising the flavor and texture of fresh-cut fruit and vegetables. In this study, an untargeted metabolomics approach based on liquid chromatography-mass spectrometry (LC–MS) was used to explore the browning mechanism in fresh-cut eggplant. Metabolomics studies showed that with the increase of fresh-cut time, the contents of 946 metabolites changed dynamically. The metabolites having the same trend share common metabolic pathways. As an important browning substrate, the content of chlorogenic acid increased significantly, suggesting that may be more important to fresh-cut eggplant browning; all 119 common differential metabolites in 5 min/CK and 3 min/CK contrastive groups were mapped onto 31 KEGG pathways including phenylpropanol metabolism, glutathione metabolism pathway, et al. In physiological experiments, results showed that the Phenylpropanoid-Metabolism-Related enzymes (PAL, C4H, 4CL) were changed after fresh-cut treatment, the activities of three enzymes increased first and then decreased, and reached the maximum value at 5 min, indicating the accumulation of phenolic substances. At the same time, ROS were accumulated when plant tissue damaged by cutting, the activities of related antioxidant enzymes (SOD, APX and CAT) changed dynamically after oxidative damage. SOD and APX content increased significantly and reached the maximum value at 10 min after cutting, and then showed a downward trend. However, CAT activity increased sharply and reached the maximum value within 3 min after cutting, then maintained the same activity, and showed a downward trend after 30 min. These data fully demonstrated that the activities of browning related enzymes and gene expression increased with the prolonging of fresh cutting time. We explained the browning mechanism of fresh-cut eggplant by combining metabolomics and physiology, which may lay the foundation for better understanding the mechanism of browning during the fruits and vegetables during processing.

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Early Growth Stage Characterization and the Biochemical Responses for Salinity Stress in Tomato

Plants ◽

10.3390/plants10040712 ◽

2021 ◽

Vol 10 (4) ◽

pp. 712

Author(s):

Md Sarowar Alam ◽

Mark Tester ◽

Gabriele Fiene ◽

Magdi Ali Ahmed Mousa

Keyword(s):

Salt Tolerance ◽

Salinity Tolerance ◽

Salinity Treatment ◽

Salt Tolerant ◽

Improvement Program ◽

Biochemical Basis ◽

Elevated Salinity ◽

Tolerance Indices ◽

Promising Source ◽

Tomato Genotypes

Salinity is one of the most significant environmental stresses for sustainable crop production in major arable lands of the globe. Thus, we conducted experiments with 27 tomato genotypes to screen for salinity tolerance at seedling stage, which were treated with non-salinized (S1) control (18.2 mM NaCl) and salinized (S2) (200 mM NaCl) irrigation water. In all genotypes, the elevated salinity treatment contributed to a major depression in morphological and physiological characteristics; however, a smaller decrease was found in certain tolerant genotypes. Principal component analyses (PCA) and clustering with percentage reduction in growth parameters and different salt tolerance indices classified the tomato accessions into five key clusters. In particular, the tolerant genotypes were assembled into one cluster. The growth and tolerance indices PCA also showed the order of salt-tolerance of the studied genotypes, where Saniora was the most tolerant genotype and P.Guyu was the most susceptible genotype. To investigate the possible biochemical basis for salt stress tolerance, we further characterized six tomato genotypes with varying levels of salinity tolerance. A higher increase in proline content, and antioxidants activities were observed for the salt-tolerant genotypes in comparison to the susceptible genotypes. Salt-tolerant genotypes identified in this work herald a promising source in the tomato improvement program or for grafting as scions with improved salinity tolerance in tomato.

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Evaluation of Imazethapyr for Weed Control in Leafy Vegetable Crops

Weed Technology ◽

10.1017/s0890037x00039907 ◽

1996 ◽

Vol 10 (2) ◽

pp. 253-257 ◽

Cited By ~ 4

Author(s):

Joan A. Dusky ◽

William M. Stall

Keyword(s):

Regression Analysis ◽

Weed Control ◽

Crop Yield ◽

Relative Sensitivity ◽

Leafy Vegetable ◽

Field Conditions ◽

Vegetable Crops ◽

Weed Species ◽

Common Lambsquarters ◽

Common Purslane

Imazethapyr was evaluated PRE and POST in five lettuce types and chicory under Florida field conditions. The relative sensitivity of leafy crop vigor (most sensitive to most tolerant) to imazethapyr PRE, based on 20% inhibition determined using regression analysis, was as follows: Boston > bibb > crisphead > romaine > leaf > escarole > endive. Leafy crop injury increased as the rate of imazethapyr applied POST increased, with all leafy crops responding in a similar manner. Surfactant addition increased imazethapyr phytotoxicity. Imazethapyr PRE treatments at 0.067 kg ai/ha provided greater than 80% control of livid amaranth, common purslane, flatsedge, and common lambsquarters. Imazethapyr POST at 0.067 kg/ha, with surfactant provided control greater than 85% of all weed species. Greater than 85% spiny amaranth control was provided by imazethapyr POST at 0.017 kg/ha. Use of surfactant with imazethapyr did not improve spiny amaranth control over imazethapyr with no surfactant. POST treatments did not decrease leafy crop yield compared with the hand-weeded check. Imazethapyr applied PRE reduced crop yield compared to the POST treatments and the hand-weeded control.

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Composite trait selection to improve reproduction and ewe productivity: a review

Animal Production Science ◽

10.1071/ea08184 ◽

2009 ◽

Vol 49 (1) ◽

pp. 9 ◽

Cited By ~ 22

Author(s):

G. D. Snowder ◽

N. M. Fogarty

Keyword(s):

Individual Component ◽

Genetic Relationships ◽

Reproductive Efficiency ◽

Component Trait ◽

Litter Weight ◽

Growth Selection ◽

Component Traits ◽

Selection For ◽

Genetic Responses ◽

Lamb Growth

Reproduction and ewe productivity are complex composite traits that are influenced by several component traits. Genetic improvement by selection for an individual component trait may not always be advantageous because adverse or neutral genetic relationships can exist among the component traits. Selection for an overall composite trait of ewe productivity, defined as litter weight weaned per ewe joined, can result in a balanced biological composite trait with favourable responses in component traits including fertility, number of lambs born, lamb survival, lactation and lamb growth. Selection for litter weight weaned may also overcome adverse genetic relationships among reproductive component traits. This review examines the genetic responses of selecting directly for litter weight weaned, compared with selection responses for one or more of its component traits. It is concluded that selection to improve reproductive efficiency and ewe productivity, under most production and environmental systems, would benefit from selection for a composite trait such as litter weight weaned, rather than for a single component trait.

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Plasticity tradeoffs in salt tolerance mechanisms among desert Distichlis spicata genotypes

Functional Plant Biology ◽

10.1071/fp10192 ◽

2011 ◽

Vol 38 (3) ◽

pp. 187 ◽

Cited By ~ 6

Author(s):

Brynne E. Lazarus ◽

James H. Richards ◽

Phoebe E. Gordon ◽

Lorence R. Oki ◽

Corey S. Barnes

Keyword(s):

Salt Tolerance ◽

Salinity Tolerance ◽

Gender Segregation ◽

Dust Control ◽

Distichlis Spicata ◽

Cellular Functions ◽

Natural Habitats ◽

Greenhouse Study ◽

Dry Lake ◽

Gender Based

We investigated genetic differences in salinity tolerance among 20 saltgrass (Distichlis spicata (L.) Greene) genotypes, including constitutive, gender-based and phenotypic plasticity traits, to better understand the basis of adaptation and acclimation by saltgrass in diverse environments. On average, the plants survived NaCl treatments up to ~1 M, with reductions in growth and health that varied with genotype. For these 20 genotypes in a greenhouse study, we showed that greater plasticity in one salt tolerance mechanism was physiologically linked to lesser plasticity in another. Under various levels of constant salinity stress, genotypes employing a strategy of greater plasticity in foliar Na and lesser plasticity in both foliar K : Na and Na turnover rate were better able to substitute Na for K in some cellular functions, especially osmotic adjustment, leading to increased salinity tolerance. Although we observed gender segregation with salinity in the Owens (Dry) Lake Playa (Inyo County, CA, USA) population planted for dust control, from which the genotypes were collected, we did not observe gender differences in salinity tolerance in the greenhouse. Significant physiological plasticity tradeoffs among genotypes, however, did affect overall salinity tolerance and may be important for this species survival in diverse managed and natural habitats.

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