scholarly journals Characterizing protein modifications by reactive metabolites using magnetic bead bioreactors and LC-MS/MS

2015 ◽  
Vol 51 (22) ◽  
pp. 4701-4703 ◽  
Author(s):  
Dandan Li ◽  
You-Jun Fu ◽  
James F. Rusling

A label-free metabolite–protein adduct detection and identification method was developed using magnetic beads coated with metabolic enzymes as bioreactors to generate metabolite–protein adducts for LC-MS/MS analysis.

2017 ◽  
Vol 36 (3) ◽  
pp. 260-267 ◽  
Author(s):  
Atsushi Kawase ◽  
Ryota Hashimoto ◽  
Mai Shibata ◽  
Hiroaki Shimada ◽  
Masahiro Iwaki

Background and Objectives: Diclofenac (DIC) is metabolized to reactive metabolites such as diclofenac acyl-β-d-glucuronide (DIC-AG). It is possible that such reactive metabolites could cause tissue damage by formation of covalent protein adducts and other modification of cellular proteins or by induction of immune responses against its covalent protein adducts. However, the detailed mechanisms of idiosyncratic drug-induced liver injury (DILI) have been unclear. The objective is to clarify the involvement of DIC-AG and 4′hydroxydiclofenac (4′OH-DIC) in acute DILI. Methods: We examined the effects of inhibiting DIC-AG and 4′OH-DIC production on covalent protein adduct formation and lactate dehydrogenase leakage using sandwich-cultured rat hepatocytes (SCRHs). Results: After pretreatment of SCRH with (−)-borneol (BOR, a uridine diphosphate (UDP)-glucuronosyltransferase inhibitor) or sulfaphenazole (SUL, a cytochrome P450 2C9 inhibitor) for 30 minutes, intracellular concentrations of DIC, DIC-AG, and 4′OH-DIC were determined after further treating cells with 300 μM DIC for 3 hours. The decreased levels of reactive metabolites caused by BOR or SUL pretreatment resulted in decreased lactate dehydrogenase leakage from SCRH, although the formation of covalent protein adducts was not affected. Conclusion: These results suggested that both DIC-AG and 4′OH-DIC may be involved in acute cytotoxicity by DIC.


2013 ◽  
Vol 753-755 ◽  
pp. 1571-1575
Author(s):  
Zhi Hua Liu ◽  
Yu Feng Huang ◽  
Jian Peng Li ◽  
Xin Wei Xu

Magnetic bead droplet's non-contacted manipulation can be realized in Electromagnetic MEMS, but how to achieve magnetic beads manipulation is the major problem. A new method of multi-layered flat coils coupled with permanent magnet was proposed. Firstly, the theory of magnetic bead manipulation was analyzed and the main factors affected the magnetic beads manipulation was identified; then the magnetic field of multi-layered flat coils and Stokes viscous resistance of magnetic beads were analyzed and simulated quantificationally; finally the magnetic bead capture area was got under different flow velocity. Consequently the feasibility and correctness of this method was verified.


2010 ◽  
Vol 4 (8-9) ◽  
pp. 697-705 ◽  
Author(s):  
Henning G. Hansen ◽  
Julie Overgaard ◽  
Maria Lajer ◽  
Frantisek Hubalek ◽  
Peter Højrup ◽  
...  

2021 ◽  
Vol 2021 ◽  
pp. 1-7
Author(s):  
Rujie Xu ◽  
Zhixiang Yin ◽  
Zhen Tang ◽  
Jing Yang ◽  
Jianzhong Cui ◽  
...  

Magnetic beads and magnetic Raman technology substrates have good magnetic response ability and surface-enhanced Raman technology (SERS) activity. Therefore, magnetic beads exhibit high sensitivity in SERS detection. In this paper, DNA cycle hybridization and magnetic bead models are combined to solve 0-1 integer programming problems. First, the model maps the variables to DNA strands with hairpin structures and weights them by the number of hairpin DNA strands. This result can be displayed by the specific binding of streptavidin and biotin. Second, the constraint condition of the 0-1 integer programming problem can be accomplished by detecting the signal intensity of the biological barcode to find the optimal solution. Finally, this model can be used to solve the general 0-1 integer programming problem and has more extensive applications than the previous DNA computing model.


Author(s):  
SANG-HO CHO ◽  
TAEWAN KIM ◽  
DAIJIN KIM

This paper proposes a pose robust human detection and identification method for sequences of stereo images using multiply-oriented 2D elliptical filters (MO2DEFs), which can detect and identify humans regardless of scale and pose. Four 2D elliptical filters with specific orientations are applied to a 2D spatial-depth histogram, and threshold values are used to detect humans. The human pose is then determined by finding the filter whose convolution result was maximal. Candidates are verified by either detecting the face or matching head-shoulder shapes. Human identification employs the human detection method for a sequence of input stereo images and identifies them as a registered human or a new human using the Bhattacharyya distance of the color histogram. Experimental results show that (1) the accuracy of pose angle estimation is about 88%, (2) human detection using the proposed method outperforms that of using the existing Object Oriented Scale Adaptive Filter (OOSAF) by 15–20%, especially in the case of posed humans, and (3) the human identification method has a nearly perfect accuracy.


The Analyst ◽  
2016 ◽  
Vol 141 (19) ◽  
pp. 5637-5645 ◽  
Author(s):  
Jacquelyn A. DuVall ◽  
Scott T. Cabaniss ◽  
Morgan L. Angotti ◽  
John H. Moore ◽  
Mayuresh Abhyankar ◽  
...  

A centrifugally-driven polyester microdevice for sequence-specific detection ofClostridium difficileusing magnetic beads, isothermal amplification, and cell phone image analysis.


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