Dissimilatory sulfur cycling in oxygen minimum zones: an emerging metagenomics perspective

2011 ◽  
Vol 39 (6) ◽  
pp. 1859-1863 ◽  
Author(s):  
Frank J. Stewart

Biological diversity in marine OMZs (oxygen minimum zones) is dominated by a complex community of bacteria and archaea whose anaerobic metabolisms mediate key steps in global nitrogen and carbon cycles. Molecular and physiological studies now confirm that OMZs also support diverse micro-organisms capable of utilizing inorganic sulfur compounds for energy metabolism. The present review focuses specifically on recent metagenomic data that have helped to identify the molecular basis for autotrophic sulfur oxidation with nitrate in the OMZ water column, as well as a cryptic role for heterotrophic sulfate reduction. Interpreted alongside marker gene surveys and process rate measurements, these data suggest an active sulfur cycle with potentially substantial roles in organic carbon input and mineralization and critical links to the OMZ nitrogen cycle. Furthermore, these studies have created a framework for comparing the genomic diversity and ecology of pelagic sulfur-metabolizing communities from diverse low-oxygen regions.

2009 ◽  
Vol 7 (5) ◽  
pp. 371-381 ◽  
Author(s):  
Niels Peter Revsbech ◽  
Lars Hauer Larsen ◽  
Jens Gundersen ◽  
Tage Dalsgaard ◽  
Osvaldo Ulloa ◽  
...  

2009 ◽  
Vol 6 (10) ◽  
pp. 2063-2098 ◽  
Author(s):  
L. A. Levin ◽  
W. Ekau ◽  
A. J. Gooday ◽  
F. Jorissen ◽  
J. J. Middelburg ◽  
...  

Abstract. Coastal hypoxia (defined here as <1.42 ml L−1; 62.5 μM; 2 mg L−1, approx. 30% oxygen saturation) develops seasonally in many estuaries, fjords, and along open coasts as a result of natural upwelling or from anthropogenic eutrophication induced by riverine nutrient inputs. Permanent hypoxia occurs naturally in some isolated seas and marine basins as well as in open slope oxygen minimum zones. Responses of benthos to hypoxia depend on the duration, predictability, and intensity of oxygen depletion and on whether H2S is formed. Under suboxic conditions, large mats of filamentous sulfide oxidizing bacteria cover the seabed and consume sulfide. They are hypothesized to provide a detoxified microhabitat for eukaryotic benthic communities. Calcareous foraminiferans and nematodes are particularly tolerant of low oxygen concentrations and may attain high densities and dominance, often in association with microbial mats. When oxygen is sufficient to support metazoans, small, soft-bodied invertebrates (typically annelids), often with short generation times and elaborate branchial structures, predominate. Large taxa are more sensitive than small taxa to hypoxia. Crustaceans and echinoderms are typically more sensitive to hypoxia, with lower oxygen thresholds, than annelids, sipunculans, molluscs and cnidarians. Mobile fish and shellfish will migrate away from low-oxygen areas. Within a species, early life stages may be more subject to oxygen stress than older life stages. Hypoxia alters both the structure and function of benthic communities, but effects may differ with regional hypoxia history. Human-caused hypoxia is generally linked to eutrophication, and occurs adjacent to watersheds with large populations or agricultural activities. Many occurrences are seasonal, within estuaries, fjords or enclosed seas of the North Atlantic and the NW Pacific Oceans. Benthic faunal responses, elicited at oxygen levels below 2 ml L−1, typically involve avoidance or mortality of large species and elevated abundances of enrichment opportunists, sometimes prior to population crashes. Areas of low oxygen persist seasonally or continuously beneath upwelling regions, associated with the upper parts of oxygen minimum zones (SE Pacific, W Africa, N Indian Ocean). These have a distribution largely distinct from eutrophic areas and support a resident fauna that is adapted to survive and reproduce at oxygen concentrations <0.5 ml L−1. Under both natural and eutrophication-caused hypoxia there is loss of diversity, through attrition of intolerant species and elevated dominance, as well as reductions in body size. These shifts in species composition and diversity yield altered trophic structure, energy flow pathways, and corresponding ecosystem services such as production, organic matter cycling and organic C burial. Increasingly the influences of nature and humans interact to generate or exacerbate hypoxia. A warmer ocean is more stratified, holds less oxygen, and may experience greater advection of oxygen-poor source waters, making new regions subject to hypoxia. Future understanding of benthic responses to hypoxia must be established in the context of global climate change and other human influences such as overfishing, pollution, disease, habitat loss, and species invasions.


2015 ◽  
Vol 112 (35) ◽  
pp. 10979-10984 ◽  
Author(s):  
Wei Qin ◽  
Laura T. Carlson ◽  
E. Virginia Armbrust ◽  
Allan H. Devol ◽  
James W. Moffett ◽  
...  

Marine ammonia-oxidizing archaea (AOA) are among the most abundant of marine microorganisms, spanning nearly the entire water column of diverse oceanic provinces. Historical patterns of abundance are preserved in sediments in the form of their distinctive glycerol dibiphytanyl glycerol tetraether (GDGT) membrane lipids. The correlation between the composition of GDGTs in surface sediment and the overlying annual average sea surface temperature forms the basis for a paleotemperature proxy (TEX86) that is used to reconstruct surface ocean temperature as far back as the Middle Jurassic. However, mounting evidence suggests that factors other than temperature could also play an important role in determining GDGT distributions. We here use a study set of four marine AOA isolates to demonstrate that these closely related strains generate different TEX86–temperature relationships and that oxygen (O2) concentration is at least as important as temperature in controlling TEX86values in culture. All of the four strains characterized showed a unique membrane compositional response to temperature, with TEX86-inferred temperatures varying as much as 12 °C from the incubation temperatures. In addition, both linear and nonlinear TEX86–temperature relationships were characteristic of individual strains. Increasing relative abundance of GDGT-2 and GDGT-3 with increasing O2limitation, at the expense of GDGT-1, led to significant elevations in TEX86-derived temperature. Although the adaptive significance of GDGT compositional changes in response to both temperature and O2is unclear, this observation necessitates a reassessment of archaeal lipid-based paleotemperature proxies, particularly in records that span low-oxygen events or underlie oxygen minimum zones.


2019 ◽  
Author(s):  
Ulrike Hanz ◽  
Claudia Wienberg ◽  
Dierk Hebbeln ◽  
Gerard Duineveld ◽  
Marc Lavaleye ◽  
...  

Abstract. Fossil cold-water coral mounds overgrown by sponges and bryozoans were observed in anoxic conditions on the Namibian margin, while mounds colonized by thriving cold-water coral reefs were found in hypoxic conditions on the Angolan margin. These low oxygen conditions do not meet known environmental ranges favoring cold-water corals and hence are expected to provide unsuitable habitats for cold-water coral growth and therefore reef formation. To explain why the living fauna can nevertheless thrive in both areas, present day environmental conditions at the southwestern African margin were assessed. Downslope CTD transects and the deployment of bottom landers were used to investigate spatial and temporal variations of environmental properties. Temporal measurements in the mound areas recorded oscillating low dissolved oxygen concentrations of 0–0.17 ml l−1 (≙ 0–9 % saturation) on the Namibian and 0.5–1.5 ml l−1 (≙ 7–18 % saturation) on the Angolan margin, which were associated with relatively high temperatures (11.8 13.2 °C and 6.4–12.6 °C respectively). Semi-diurnal barotrophic tides were found to interact with the margin topography producing internal waves with excursions of up to 70 and 130 m for the Namibian and Angolan margins, respectively. These tidal movements temporarily deliver water with more suitable characteristics to the coral mounds from below and above the hypoxic zone. Concurrently, the delivery of high quantity and quality of suspended particulate organic matter was observed, which serves as a food source for cold-water corals. On the Namibian slope organic matter indicates a completely marine source and originates directly from the surface productive zone, whereas on the Angolan margin the geochemical signature of organic material suggest an additional mechanisms of food supply. A nepheloid layer observed above the cold-water coral mound area on the Angolan margin may constitutes a reservoir of fresh organic matter, facilitating a constant supply of food particles by tidal mixing. This suggests that the cold-water coral communities as well as the associated fauna may compensate unfavorable conditions induced by low oxygen levels and high temperatures with an enhanced availability of food. With the expected expansion of oxygen minimum zones in the future due to anthropogenic activities, this study provides an example on how ecosystems could cope with such extreme environmental conditions.


2016 ◽  
Author(s):  
Daniela Niemeyer ◽  
Tronje P. Kemena ◽  
Katrin J. Meissner ◽  
Andreas Oschlies

Abstract. Observations indicate an expansion of oxygen minimum zones (OMZs) over the past 50 years, likely related to ongoing deoxygenation caused by reduced solubility, changes in stratification and circulation, and a potential acceleration of organic matter turnover in a warming climate. Higher temperatures also lead to enhanced weathering on land, which, in turn, increase the phosphorus and alkalinity flux into the ocean. The overall area of ocean sediments that are in direct contact with low oxygen bottom waters also increases with expanding OMZs. This leads to an additional release of phosphorus from ocean sediments and therefore raises the ocean's phosphorus inventory even further. Higher availability in phosphorus enhances biological production, remineralisation and oxygen consumption, and might therefore lead to further expansions of OMZs, representing a positive feedback. A negative feedback arises from the enhanced productivity-induced drawdown of carbon and also increased uptake of CO2 due to increased alkalinity, which, in turn, got there through weathering. This feedback leads to a decrease in atmospheric CO2 and weathering rates. Here we quantify these two competing feedbacks on millennial timescales for a high CO2 emission scenario. Using the UVic Earth System Climate Model of intermediate complexity, our model results suggest that the positive benthic phosphorus release feedback has only a minor impact on the size of OMZs in the next 1000 years, although previous studies assume that the phosphorus release feedback was the main factor for anoxic conditions during Cretaceous period. The increase in the marine phosphorus inventory under assumed business-as-usual global warming conditions originates, on millennial timescales, almost exclusively from the input via terrestrial weathering and causes a 4 to 5-fold expansion of the suboxic water volume in the model.


2021 ◽  
Author(s):  
Natalia Herran ◽  
Martin Schmidt ◽  
Volker Mohrholz ◽  
Heide Schulz-Vogt

&lt;p&gt;On the seabed of oxygen minimum zones (OMZ), embedded in organic-rich sediments, large sulfur bacteria (LSB) fulfil an important ecological role by detoxifying the overlying bottom waters. &lt;em&gt;Thiomargarita Namibiensis&lt;/em&gt; and &lt;em&gt;Beggiatoa&lt;/em&gt; spp. are chemoautotrophic microorganisms that reduce sulfur compounds to create biomass and link by doing so the carbon, sulfur, oxygen and nitrate cycle very efficiently. This particular ability make life in suboxic and hypoxic coastal waters feasible. Nevertheless, due to the complexity of sulfur oxidation and its various pathways the quantification of such activity is of great complexity. Hereby, we describe a model framework of LSB activity to implement intrinsic properties of the bacteria based on field observations and numerical modelling validations, linking the stoichiometry and energy conservation efficiency of LSB while counting for the reduced sulfur pools and its partitioning sub-products.&lt;/p&gt;


2012 ◽  
Vol 9 (12) ◽  
pp. 5007-5022 ◽  
Author(s):  
L. M. Zamora ◽  
A. Oschlies ◽  
H. W. Bange ◽  
K. B. Huebert ◽  
J. D. Craig ◽  
...  

Abstract. The eastern tropical Pacific (ETP) is believed to be one of the largest marine sources of the greenhouse gas nitrous oxide (N2O). Future N2O emissions from the ETP are highly uncertain because oxygen minimum zones are expected to expand, affecting both regional production and consumption of N2O. Here we assess three primary uncertainties in how N2O may respond to changing O2 levels: (1) the relationship between N2O production and O2 (is it linear or exponential at low O2 concentrations?), (2) the cutoff point at which net N2O production switches to net N2O consumption (uncertainties in this parameterisation can lead to differences in model ETP N2O concentrations of more than 20%), and (3) the rate of net N2O consumption at low O2. Based on the MEMENTO database, which is the largest N2O dataset currently available, we find that N2O production in the ETP increases linearly rather than exponentially with decreasing O2. Additionally, net N2O consumption switches to net N2O production at ~ 10 μM O2, a value in line with recent studies that suggest consumption occurs on a larger scale than previously thought. N2O consumption is on the order of 0.01–1 mmol N2O m−3 yr−1 in the Peru-Chile Undercurrent. Based on these findings, it appears that recent studies substantially overestimated N2O production in the ETP. In light of expected deoxygenation and the higher than previously expected point at which net N2O production switches to consumption, there is enough uncertainty in future N2O production that even the sign of future changes is still unclear.


2019 ◽  
Vol 16 (22) ◽  
pp. 4337-4356 ◽  
Author(s):  
Ulrike Hanz ◽  
Claudia Wienberg ◽  
Dierk Hebbeln ◽  
Gerard Duineveld ◽  
Marc Lavaleye ◽  
...  

Abstract. Thriving benthic communities were observed in the oxygen minimum zones along the southwestern African margin. On the Namibian margin, fossil cold-water coral mounds were overgrown by sponges and bryozoans, while the Angolan margin was characterized by cold-water coral mounds covered by a living coral reef. To explore why benthic communities differ in both areas, present-day environmental conditions were assessed, using conductivity–temperature–depth (CTD) transects and bottom landers to investigate spatial and temporal variations of environmental properties. Near-bottom measurements recorded low dissolved oxygen concentrations on the Namibian margin of 0–0.15 mL L−1 (≜0 %–9 % saturation) and on the Angolan margin of 0.5–1.5 mL L−1 (≜7 %–18 % saturation), which were associated with relatively high temperatures (11.8–13.2 ∘C and 6.4–12.6 ∘C, respectively). Semidiurnal barotropic tides were found to interact with the margin topography producing internal waves. These tidal movements deliver water with more suitable characteristics to the benthic communities from below and above the zone of low oxygen. Concurrently, the delivery of a high quantity and quality of organic matter was observed, being an important food source for the benthic fauna. On the Namibian margin, organic matter originated directly from the surface productive zone, whereas on the Angolan margin the geochemical signature of organic matter suggested an additional mechanism of food supply. A nepheloid layer observed above the cold-water corals may constitute a reservoir of organic matter, facilitating a constant supply of food particles by tidal mixing. Our data suggest that the benthic fauna on the Namibian margin, as well as the cold-water coral communities on the Angolan margin, may compensate for unfavorable conditions of low oxygen levels and high temperatures with enhanced availability of food, while anoxic conditions on the Namibian margin are at present a limiting factor for cold-water coral growth. This study provides an example of how benthic ecosystems cope with such extreme environmental conditions since it is expected that oxygen minimum zones will expand in the future due to anthropogenic activities.


2019 ◽  
Vol 11 (1) ◽  
pp. 105-130 ◽  
Author(s):  
Katja Fennel ◽  
Jeremy M. Testa

Aquatic environments experiencing low-oxygen conditions have been described as hypoxic, suboxic, or anoxic zones; oxygen minimum zones; and, in the popular media, the misnomer “dead zones.” This review aims to elucidate important aspects underlying oxygen depletion in diverse coastal systems and provides a synthesis of general relationships between hypoxia and its controlling factors. After presenting a generic overview of the first-order processes, we review system-specific characteristics for selected estuaries where adjacent human settlements contribute to high nutrient loads, river-dominated shelves that receive large inputs of fresh water and anthropogenic nutrients, and upwelling regions where a supply of nutrient-rich, low-oxygen waters generates oxygen minimum zones without direct anthropogenic influence. We propose a nondimensional number that relates the hypoxia timescale and water residence time to guide the cross-system comparison. Our analysis reveals the basic principles underlying hypoxia generation in coastal systems and provides a framework for discussing future changes.


2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Anja Engel ◽  
Rainer Kiko ◽  
Marcus Dengler

Organic matter (OM) plays a significant role in the formation of oxygen minimum zones (OMZs) and associated biogeochemical cycling. OM supply processes to the OMZ include physical transport, particle formation, and sinking as well as active transport by migrating zooplankton and nekton. In addition to the availability of oxygen and other electron acceptors, the remineralization rate of OM is controlled by its biochemical quality. Enhanced microbial respiration of OM can induce anoxic microzones in an otherwise oxygenated water column. Reduced OM degradation under low-oxygen conditions, on the other hand, may increase the CO2 storage time in the ocean. Understanding the interdependencies between OM and oxygen cycling is of high relevance for an ocean facing deoxygenation as a consequence of global warming. In this review, we describe OM fluxes into and cycling within two large OMZs associated with eastern boundary upwelling systems that differ greatly in the extent of oxygen loss: the highly oxygen-depleted OMZ in the tropical South Pacific and the moderately hypoxic OMZ in the tropical North Atlantic. We summarize new findings from a large German collaborative research project, Collaborative Research Center 754 (SFB 754), and identify knowledge gaps and future research priorities. Expected final online publication date for the Annual Review of Marine Science, Volume 14 is January 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.


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