Formulation of a new explicit tidal scheme in ocean general circulation model

Tides play an important role in ocean energy transfer and mixing, and provide major energy for maintaining thermohaline circulation. This study proposes a new explicit tidal scheme and assesses its performance in a global ocean model. Instead of using empirical specifications of tidal amplitudes and frequencies, the new scheme directly uses the positions of the Moon and Sun in a global ocean model to incorporate tides. Compared with the traditional method that has specified tidal constituents, the new scheme can better simulate the diurnal and spatial characteristics of the tidal potential of spring and neap tides as well as the spatial patterns and magnitudes of major tidal constituents (K1 and M2). It significantly reduces the total errors of eight tidal constituents (with the exception of N2 and Q1) in the traditional explicit tidal scheme. Relative to the control simulation without tides, both the new and traditional tidal schemes can lead to better dynamic sea level (DSL) simulation in the North Atlantic, reducing significant negative biases in this region. The new tidal scheme also shows smaller positive bias than the traditional scheme in the Southern Ocean. The new scheme is suited to calculate regional distributions of sea level height in addition to tidal mixing.

A Fine Grid Tide-Wave-Ocean Circulation Coupled Model for the Yellow Sea: Comparison of Turbulence Closure Schemes in Reproducing Temperature Distributions

The performance of three turbulence closure schemes (TCSs), the generic length scale scheme (GLS), the Mellor–Yamada 2.5 scheme (MY2.5) and the K-profile parameterization scheme (KPP), embedded in the ocean model ROMS, was compared with attention to the reproduction of summertime temperature distribution in the Yellow Sea. The ROMS model has a horizontal resolution of 1/30° and 30 vertical sigma layers. For model validation, root mean square errors were checked, comparing model results with wave and temperature buoy data as well as tidal station data supplied by various organizations within the Republic of Korea. Computed temperature and vertical temperature diffusion coefficients were mainly compared along Lines A (36° N) and B (125° E) crossing the central Yellow Sea, Lines C (32° N) and E (34° N) passing over the Yangtze Bank and Line D off the Taean Peninsula. Calculations showed that GLS and MY2.5 produced vertical mixing stronger than KPP in both the surface and bottom layers, but the overall results were reasonably close to each other. The lack of observational data was a hindrance in comparing the detailed performance between the TCSs. However, it was noted that the simulation capability of cold patches in the tidal mixing front can be useful in identifying the better performing turbulence closure scheme. GLS and MY2.5 clearly produced the cold patch located near the western end of Line E (122° E–122.3° E), while KPP hardly produced its presence. Similar results were obtained along Line D but with a less pronounced tidal mixing front. Along Line C, GLS and MY2.5 produced a cold patch on the western slope of the Yellow Sea, the presence of which had never been reported. Additional measurements near 125° E–126° E of Line C and along the channel off the Taean Peninsula (Line D) are recommended to ensure the relative performance superiority between the TCSs.

Summertime M2 Internal Tides in the Northern Yellow Sea

The summertime M2 internal tide in the northern Yellow Sea is investigated with moored current meter observations and numerical current model results. The hydrodynamic model, which is implemented from the Regional Ocean Model System (ROMS) with 1 km horizontal resolution, is capable of resolving the internal tidal dynamics and the results are validated in a comparison with observations. The vertical pattern of a mode-1, semi-diurnal internal tide is clearly captured by the moored ADCP as well as in the simulation results. Spectral analysis of the current results shows that the M2 internal tide is dominant in the northern Yellow Sea. Analysis of the major M2 internal tide energetics demonstrated a complex spatial pattern. The tidal mixing front along the Korean coast and on the northern shelf provided proper conditions for the generation and propagation of the internal tides. Near the Changshan islands, the M2 internal tide is mainly generated near the local topography anomalies with relatively strong current magnitude, equal to about 30% of the barotropic component, thus modifying the local current field. These local internal tides are short-lived phenomena rapidly being dissipated along the propagation pathway, restricting their influence within a few kilometers around the islands.

Winter observations alter the seasonal perspectives of the nutrient transport pathways into the lower St. Lawrence Estuary

The St. Lawrence Estuary connects the Great Lakes with the Atlantic Ocean. The accepted view, based on summer conditions, is that the estuary's surface layer receives its nutrient supply from vertical mixing processes. This mixing is caused by the estuarine circulation and tides interacting with the topography at the head of the Laurentian Channel. During winter when ice forms, historical process-based studies have been limited in scope. Winter monitoring has been typically confined to vertical profiles of salinity and temperature as well as near-surface water samples collected from a helicopter for nutrient analysis. In 2018, however, the Canadian Coast Guard approved a science team to sample in tandem with its ice-breaking and ship escorting operations. This opportunistic sampling provided the first winter turbulence observations, which covered the largest spatial extent ever measured during any season within the St. Lawrence Estuary and the Gulf of St. Lawrence. The nitrate enrichment from tidal mixing resulted in an upward nitrate flux of about 30 nmol m−2 s−1, comparable to summer values obtained at the same tidal phase. Further downstream, deep nutrient-rich water from the gulf was mixed into the subsurface nutrient-poor layer at a rate more than an order of magnitude smaller than at the head. These fluxes were compared to the nutrient load of the upstream St. Lawrence River. Contrary to previous assumptions, fluvial nitrate inputs are the most significant source of nitrate in the estuary. Nitrate loads from vertical mixing processes would only exceed those from fluvial sources at the end of summer when fluvial inputs reach their annual minimum.

Automatic Segregation of Pelagic Habitats

It remains difficult to segregate pelagic habitats since structuring processes are dynamic on a wide range of scales and clear boundaries in the open ocean are non-existent. However, to improve our knowledge about existing ecological niches and the processes shaping the enormous diversity of marine plankton, we need a better understanding of the driving forces behind plankton patchiness. Here we describe a new machine-learning method to detect and quantify pelagic habitats based on hydrographic measurements. An Autoencoder learns two-dimensional, meaningful representations of higher-dimensional micro-habitats, which are characterized by a variety of biotic and abiotic measurements from a high-speed ROTV. Subsequently, we apply a density-based clustering algorithm to group similar micro-habitats into associated pelagic macro-habitats in the German Bight of the North Sea. Three distinct macro-habitats, a “surface mixed layer,” a “bottom layer,” and an exceptionally “productive layer” are consistently identified, each with its distinct plankton community. We provide evidence that the model detects relevant features like the doming of the thermocline within an Offshore Wind Farm or the presence of a tidal mixing front.

Seasonal temporal dynamics of marine protists communities in tidally mixed coastal waters

Major seasonal community reorganizations and associated biomass variations are landmarks of plankton ecology. However, the processes determining marine species and community turnover rates have not been fully elucidated so far. Here, we analyse patterns of planktonic protist community succession in temperate latitudes, based on quantitative taxonomic data from both microscopy counts and ribosomal DNA metabarcoding from plankton samples collected biweekly over 8 years (2009-2016) at the SOMLIT-Astan station (Roscoff, Western English Channel). Considering the temporal structure of community dynamics (creating temporal correlation), we elucidated the recurrent seasonal pattern of the dominant species and OTUs (rDNA-derived taxa) that drive annual plankton successions. The use of morphological and molecular analyses in combination allowed us to assess absolute species abundance while improving taxonomic resolution, and revealed a greater diversity. Overall, our results underpinned a protist community characterised by a seasonal structure, which is supported by the dominant OTUs. We detected that some were partly benthic as a result of the intense tidal mixing typical of the French coasts in the English Channel. While the occurrence of these microorganisms is driven by the physical and biogeochemical conditions of the environment, internal community processes, such as the complex network of biotic interactions, also play a key role in shaping protist communities.

Summer Wind Effects on Coastal Upwelling in the Southwestern Yellow Sea

The features of coastal upwelling in the southwestern Yellow Sea were investigated based on oceanology data from a research cruise and a regional circulation model. The observation data suggest that a relatively colder and saltier water core exists from the deeper layer to the surface, off the Subei Bank. The concentrations of nutrients also suggest that coastal upwelling is beneficial for nutrient enrichment in the upper layer. The numerical simulations are in good agreement with oceanology observations. Furthermore, sensitivity experiments indicate that, in addition to the tidal-induced upwelling and tidal mixing proposed in previous studies, the summer monsoon is also critical to vertical circulation in the southwestern Yellow Sea. The southwesterly wind stress and positive wind stress curl make considerable contributions to upwelling off the Subei coast compared with tidal motions. Moreover, this study also proposes that changes in the summer monsoon and its curl may have been helpful to the formation of upwelling during the past decade, which may have provided a favorable marine environment for the frequent occurrence of green tides. This study provides a theoretical basis for the mechanisms of coastal upwelling and the nitrogen cycle in the Yellow Sea.

Enhanced vertical mixing in the glacial ocean inferred from sedimentary carbon isotopes

Reconstructing the circulation, mixing and carbon content of the Last Glacial Maximum ocean remains challenging. Recent hypotheses suggest that a shoaled Atlantic meridional overturning circulation or increased stratification would have reduced vertical mixing, isolated the abyssal ocean and increased carbon storage, thus contributing to lower atmospheric CO2 concentrations. Here, using an ensemble of ocean simulations, we evaluate impacts of changes in tidal energy dissipation due to lower sea levels on ocean mixing, circulation, and carbon isotope distributions. We find that increased tidal mixing strengthens deep ocean flow rates and decreases vertical gradients of radiocarbon and δ13C in the deep Atlantic. Simulations with a shallower overturning circulation and more vigorous mixing fit sediment isotope data best. Our results, which are conservative, provide observational support that vertical mixing in the glacial Atlantic may have been enhanced due to more vigorous tidal dissipation, despite shoaling of the overturning circulation and increases in stratification.

Distribution and habitat conditions of walleye pollock Theragra chalcogramma at southern Kuril Islands

Data on spatial distribution and habitat conditions are presented for walleye pollock Theragra chalcogramma at southern Kuril Islands in spawning season (spring 2015) and feeding season (summer 2016). In spring, walleye pollock are distributed over the entire shelf and continental slope down to 900 m depth and occupy the upper layer on the shelf and intermediate layer at the slope with water temperature 0.1–1.5 o C. In summer, they aggregate at the depth of 200–270 m beyond the shelf in the intermediate water at the Pacific slope of Iturup Island, under the temperature of 1.3–2.9 o C. Both spatial and bathymetric migrations of pollock are minimal at the Pacific side of Iturup, but they migrate for spawning westward and southwestward to the Okhotsk Sea and slope of Small Kuril Ridge where concentrate at the benthic front between the tidal mixing zone and the Intermediate water. Seasonal redistribution of walleye pollock is accompanied with changes of size-age structure in the main aggregations.

Nutrient transport pathways in the Lower St. Lawrence Estuary: seasonal perspectives from winter observations

The St. Lawrence Estuary connects the Great Lakes with the Atlantic Ocean. The accepted view, based on summer conditions, is that the Estuary's surface layer receives its nutrient supply from vertical mixing processes. This mixing is caused by the estuarine circulation and tidal-upwelling at the Head of the Laurentian Channel (HLC). During winter when ice forms, historical process-based studies have been limited in scope. Winter monitoring has been typically confined to vertical profiles of salinity and temperature and near-surface water samples collected from a helicopter for nutrient analysis. In 2018, however, the Canadian Coast Guard approved a science team to sample in tandem with its icebreaking and ship escorting operations. This opportunistic sampling provided the first winter turbulence observations, which covered the largest spatial extent ever measured during any season within the St. Lawrence Estuary and Gulf. The nitrate enrichment from tidal mixing resulted in an upward nitrate flux of about 30 nmol m−2 s−1, comparable to summer values obtained at the same tidal phase. Further downstream, deep nutrient-rich water from the Gulf was mixed into the subsurface nutrient-poor layer at a rate more than an order of magnitude smaller than at the HLC. These fluxes were compared to the nutrient load of the upstream St. Lawrence River. Contrary to previous assumptions, fluvial nitrate inputs are the most significant source of nitrate in the Estuary. Nitrate loads from vertical mixing processes would only exceed those from fluvial sources at the end of summer when fluvial inputs reach their annual minimum.