scholarly journals Analysis Tools for the VyPR Performance Analysis Framework for Python

2020 ◽  
Vol 245 ◽  
pp. 05013
Author(s):  
Joshua Heneage Dawes ◽  
Marta Han ◽  
Giles Reger ◽  
Giovanni Franzoni ◽  
Andreas Pfeiffer
Keyword(s):  
Performance Analysis ◽  
Source Code ◽  
Analysis Framework ◽  
Web Based ◽  
The Past ◽  
Performance Requirements ◽  
Analysis Tools ◽  
The Common ◽  
Single Path

VyPR (http://pyvypr.github.io/home/) is a framework being developed with the aim of automating as much as possible the performance analysis of Python programs. To achieve this, it uses an analysis-by-specification approach; developers specify the performance requirements of their programs (without any modifications of the source code) and such requirements are checked at runtime. VyPR then provides tools which allow developers to perform detailed analyses of the performance of their code. Such analyses can include determining the common paths taken to reach badly performing parts of code, deciding whether a single path through code led to variations in time taken by future observations, and more. This paper describes the developments that have taken place in the past year on VyPR’s analysis tools to yield a Python shell-based analysis library, and a web-based application. It concludes by demonstrating the use of the analysis tools on the CMS Experiment’s Conditions Upload service.

Systems Thinking and Team Performance Analysis

2016 ◽  
Vol 3 (2) ◽  
pp. 184-191 ◽  
Author(s):  
Sadjad Soltanzadeh ◽  
Mitchell Mooney
Keyword(s):  
Critical Thinking ◽  
Performance Analysis ◽  
Systems Thinking ◽  
Team Performance ◽  
Conceptual Analysis ◽  
The Past ◽  
Data Collecting ◽  
The Common

Systems thinking has been developed and used in many fields such as management, economics, and engineering in the past few decades. Although implicit elements of systems thinking may be found in some coaching biographies and autobiographies, a critical and explicit work on systems thinking that examines its principles and its relevance to sport sciences and coaching is yet to be developed. The aim of this Insight paper is to explore systems thinking and its potential for modelling and analysing team performance by (a) explaining how systems thinking is used in other fields, (b) highlighting the importance of conceptual analysis and critical thinking next to data collecting practices, and (c) contrasting systems thinking with the common approaches to modelling and analysing team performance.

scholarly journals VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Yingbo Cui ◽  
Zihang Wang ◽  
Johannes Köster ◽  
Xiangke Liao ◽  
Shaoliang Peng ◽  
...  
Keyword(s):  
Source Code ◽  
Read Count ◽  
Analysis Framework ◽  
Web Based ◽  
General Application ◽  
Screening Analysis ◽  
Guide Rna ◽  
Link Type ◽  
Screening Experiments ◽  
Interactive Environment

Abstract Background VISPR is an interactive visualization and analysis framework for CRISPR screening experiments. However, it only supports the output of MAGeCK, and requires installation and manual configuration. Furthermore, VISPR is designed to run on a single computer, and data sharing between collaborators is challenging. Results To make the tool easily accessible to the community, we present VISPR-online, a web-based general application allowing users to visualize, explore, and share CRISPR screening data online with a few simple steps. VISPR-online provides an exploration of screening results and visualization of read count changes. Apart from MAGeCK, VISPR-online supports two more popular CRISPR screening analysis tools: BAGEL and JACKS. It provides an interactive environment for exploring gene essentiality, viewing guide RNA (gRNA) locations, and allowing users to resume and share screening results. Conclusions VISPR-online allows users to visualize, explore and share CRISPR screening data online. It is freely available at http://vispr-online.weililab.org, while the source code is available at https://github.com/lemoncyb/VISPR-online.

STEPS OF VERIFICATION AND VALIDATION ROUTE AIMED AT OBTAINING THE SOC MODEL ABLE TO PERFORM TARGET TASKS AND ALGORITHMS WITH SPECIFIED CHARACTERISTICS

2018 ◽  
pp. 64-72
Author(s):  
K. A. Zhezlov ◽  
Ya. S. Kolbasov ◽  
A. V. Nikolaev ◽  
F. M. Putrya ◽  
S. E. Frolova
Keyword(s):  
Performance Analysis ◽  
Architectural Design ◽  
Performance Metrics ◽  
Verification And Validation ◽  
Performance Requirements ◽  
Analysis Tools ◽  
System Verification ◽  
Performance Analysis Tools ◽  
Abstraction Levels ◽  
Real Traffic

In order to ensure the convergence of SoC design based on its performance on real applications the entire route of SoC development starting with the architectural design to the qualification tests for topological netlist should be focused on the early localization of performance issues and the confirmation of consumer characteristics of SoC before its tapeout. The article describes some of the details of of SoC verification flow, based on the convergence of performance requirements. Also the results of the work of tools used in research of SoC and its components at various abstraction levels are presented. Verification flow is based on the usage of templated test environments and unified performance analysis tools. Method of description of input stimuluses based on graphs is proposed. This method allows recovering the scenarios which discovered errors and simulateing of real traffic. Steps of system verification and validation route, oriented to the SoC model capable to perform targeted objectives and algorithms with preset characteristics are proposed. An example of a system verified by principle of performance metrics control is given.

scholarly journals Towards a dashboard environment for repeating and reusing research

2017 ◽  
Author(s):  
Ian Taylor ◽  
Jarek Nabrzyski
Keyword(s):  
Source Code ◽  
International Federation ◽  
Data Service ◽  
Proof Of Concept ◽  
Communication Research ◽  
National Data ◽  
Web Based ◽  
Data Archiving ◽  
The Past ◽  
High Level

Over the past 18 months, we have been working on a dashboard concept that enables researchers a means of interacting with existing research. This work was motivated by the National Data Service (NDS), which is an emerging vision of how scientists and researchers across all disciplines can find, reuse, and publish data. NDS intends to provide an international federation of data providers, data aggregators, community-specific federations, publishers, and cyberinfrastructure providers by linking data archiving and sharing efforts together with a common set of tools. This abstract provides a status of the two existing proof-of-concept pilot dashboard implementations and how we plan to evolve this work. At a high level, the researcher dashboard aims to provide an intuitive Web-based interface to expose fully interactive research containers that support the lifecycle of scholarly communication. Research containers enable executable and repeatable research by supporting methods, source code, and data within dynamically created Docker containers.

scholarly journals Towards a dashboard environment for repeating and reusing research

2017 ◽  
Author(s):  
Ian Taylor ◽  
Jarek Nabrzyski
Keyword(s):  
Source Code ◽  
International Federation ◽  
Data Service ◽  
Proof Of Concept ◽  
Communication Research ◽  
National Data ◽  
Web Based ◽  
Data Archiving ◽  
The Past ◽  
High Level

Over the past 18 months, we have been working on a dashboard concept that enables researchers a means of interacting with existing research. This work was motivated by the National Data Service (NDS), which is an emerging vision of how scientists and researchers across all disciplines can find, reuse, and publish data. NDS intends to provide an international federation of data providers, data aggregators, community-specific federations, publishers, and cyberinfrastructure providers by linking data archiving and sharing efforts together with a common set of tools. This abstract provides a status of the two existing proof-of-concept pilot dashboard implementations and how we plan to evolve this work. At a high level, the researcher dashboard aims to provide an intuitive Web-based interface to expose fully interactive research containers that support the lifecycle of scholarly communication. Research containers enable executable and repeatable research by supporting methods, source code, and data within dynamically created Docker containers.

SISTEM INFORMASI MANAJEMEN PENGARSIPAN BERBASIS FRAMEWORK CODE IGNITER UNTUK MENTERTIBKAN PELAYANAN SURAT MENYURAT

2019 ◽  
Vol 2 (1) ◽  
pp. 1-16
Author(s):  
Nana Suarna
Keyword(s):  
Source Code ◽  
Web Based

Seiring waktu, jumlah surat dalam sebuah perusahaan semakin hari makin banyak, sehingga muncul permasalahan dalam mengelolanya administrasi suarat, baik ketika dalam pencatatan surat maupun proses disposisi, serta pada saat pencarian arsip surat. Hampir sebagai besar surat yang ada di kantor-kantor masih disimpan dalam bentuk file-file yang masih bersifat manual, sehingga memungkinkan surat tersebut menunpuk, dan memerlukan waktu yang lama dalam pencarian dan pemrosesannya. Dengan dibangunnya  sistem manajemen pengarsipan bertujuan untuk mengatasi permasalahan-permasalahan tersebut di atas. Pemrograman  saat ini, baik desktop maupun web based, semakin marak  pengerjaannya menggunakan framework code igniter berbasis PHP. Framework CI memang dikembangkan untuk memudahkan dalam developing aplikasi dengan struktur  file source code-nya menggunakan pendekatan Models-Views-Controller (MVC) dan pemrograman berorientasi objek, oleh sebab itu penulis menggunakan CI dalam developing aplikasi ini. Aplikasi sistem manajemen surat dan pengarsipan ini dapat diakses dalam internal perusahaan web, yang bertujuan untuk memudahkan karyawan  dalam pengelolaan dan  mengaksesnya surat menyurat, selain itu aplikasi ini juga memberikan kemudahan dalam proses pencatatan surat,  disposisi, dan proses pencarian sehingga aplikasisi ini memiliki performa yang handal, mudah untuk di-maintenance dan dikembangkan lebih lanjut seiring perkembangan kebutuhan penggunanya.

Implementasi Algoritma Hamming Distance dan Brute Force dalam Mendeteksi Kemiripan Source Code Bahasa Pemrograman C

2017 ◽  
Vol 8 (2) ◽  
Author(s):  
Andreas Budiman ◽  
Dennis Gunawan ◽  
Seng Hansun
Keyword(s):  
College Presidents ◽  
Hamming Distance ◽  
Source Code ◽  
Structural Type ◽  
Brute Force ◽  
Important Thing ◽  
The Past ◽  
Index Terms ◽  
Better Than

Plagiarism is a behavior that causes violence of copyrights. Survey shows 55% of college presidents say that plagiarism in students’ papers has increased over the past 10 years. Therefore, an application for detecting plagiarism is needed, especially for teachers. This plagiarism checker application is made by using Visual C# 2010. The plagiarism checker uses hamming distance algorithm for matching line code of the source code. This algorithm works by matching the same length string of the code programs. Thus, it needs brute will be matched with hamming distance. Another important thing for detecting plagiarism is the preprocessing, which is used to help the algorithm for detecting plagiarized source code. This paper shows that the application works good in detecting plagiarism, the hamming distance algorithm and brute force algorithm works better than levenstein distance algorithm for detecting structural type of plagiarism and this thesis also shows that the preprocessing could help the application to increase its percentage and its accuracy. Index Terms—Brute Force, Hamming Distance, Plagiarisme, Preprocessing.

Beyond Promoter: The Role of Macrophage in Invasion and Progression of Renal Cell Carcinoma

2020 ◽  
Vol 15 (7) ◽  
pp. 588-596
Author(s):  
Haibao Zhang ◽  
Guodong Zhu
Keyword(s):  
Renal Cell Carcinoma ◽  
Tumor Microenvironment ◽  
Cell Carcinoma ◽  
Renal Cell ◽  
Cell Formation ◽  
Biological Behavior ◽  
Tumor Stem Cell ◽  
The Past ◽  
The Common

Renal cell carcinoma (RCC) is one of the common urologic neoplasms, and its incidence has been increasing over the past several decades; however, its pathogenesis is still unknown up to now. Recent studies have found that in addition to tumor cells, other cells in the tumor microenvironment also affect the biological behavior of the tumor. Among them, macrophages exist in a large amount in tumor microenvironment, and they are generally considered to play a key role in promoting tumorigenesis. Therefore, we summarized the recent researches on macrophage in the invasiveness and progression of RCC in latest years, and we also introduced and discussed many studies about macrophage in RCC to promote angiogenesis by changing tumor microenvironment and inhibit immune response in order to activate tumor progression. Moreover, macrophage interactes with various cytokines to promote tumor proliferation, invasion and metastasis, and it also promotes tumor stem cell formation and induces drug resistance in the progression of RCC. The highlight of this review is to make a summary of the roles of macrophage in the invasion and progression of RCC; at the same time to raise some potential and possible targets for future RCC therapy.

Searching for Political Parties in the Past

2017 ◽  
Author(s):  
Piero Ignazi
Keyword(s):  
Eighteenth Century ◽  
Political Parties ◽  
Political Party ◽  
Ancient Greece ◽  
Political Community ◽  
Democratic Politics ◽  
The Political ◽  
The Past ◽  
The Common

Chapter 1 introduces the long and difficult process of the theoretical legitimation of the political party as such. The analysis of the meaning and acceptance of ‘parties’ as tools of expressing contrasting visions moves forward from ancient Greece and Rome where (democratic) politics had first become a matter of speculation and practice, and ends up with the first cautious acceptance of parties by eighteenth-century British thinkers. The chapter explores how parties or factions have been constantly considered tools of division of the ‘common wealth’ and the ‘good society’. The holist and monist vision of a harmonious and compounded society, stigmatized parties and factions as an ultimate danger for the political community. Only when a new way of thinking, that is liberalism, emerged, was room for the acceptance of parties set.

Can Groups Assert That P?

2019 ◽  
pp. 326-344
Author(s):  
Deborah Tollefsen
Keyword(s):  
Common Ground ◽  
Speech Act ◽  
Single Individual ◽  
Constitutive Rule ◽  
The Past ◽  
Group Members ◽  
The Common ◽  
Declarative Statement ◽  
John Macfarlane

When a group or institution issues a declarative statement, what sort of speech act is this? Is it the assertion of a single individual (perhaps the group’s spokesperson or leader) or the assertion of all or most of the group members? Or is there a sense in which the group itself asserts that p? If assertion is a speech act, then who is the actor in the case of group assertion? These are the questions this chapter aims to address. Whether groups themselves can make assertions or whether a group of individuals can jointly assert that p depends, in part, on what sort of speech act assertion is. The literature on assertion has burgeoned over the past few years, and there is a great deal of debate regarding the nature of assertion. John MacFarlane has helpfully identified four theories of assertion. Following Sandy Goldberg, we can call these the attitudinal account, the constitutive rule account, the common-ground account, and the commitment account. I shall consider what group assertion might look like under each of these accounts and doing so will help us to examine some of the accounts of group assertion (often presented as theories of group testimony) on offer. I shall argue that, of the four accounts, the commitment account can best be extended to make sense of group assertion in all its various forms.

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