Hindered rotation around the amide bond in a series of derivatives of 2-acetamidothiophenes

1991 ◽  
Vol 88 ◽  
pp. 689-707 ◽  
Author(s):  
P Andriamadio ◽  
D Nicole ◽  
A Cartier ◽  
M Wierzbicki ◽  
G Kirsch
1983 ◽  
Vol 215 (2) ◽  
pp. 253-260 ◽  
Author(s):  
S P Leytus ◽  
W L Patterson ◽  
W F Mangel

A series of dipeptide derivatives of Rhodamine, each containing an arginine residue in the P1 position and one of ten representative benzyloxycarbonyl (Cbz)-blocked amino acids in the P2 position, has been synthesized, purified and characterized as substrates for serine proteinases. These substrates are easily prepared with high yields. Cleavage of a single amide bond converts the non-fluorescent bisamide substrate into a highly fluorescent monoamide product. Macroscopic kinetic constants for the interaction of these substrates with bovine trypsin, human and dog plasmin, and human thrombin are reported. Certain of these substrates exhibit extremely large specificity constants. For example, the kcat./Km for bovine trypsin with bis-(N-benzyloxycarbonylglycyl-argininamido)-Rhodamine [(Cbz-Gly-Arg-NH)2-Rhodamine] is 1 670 000 M-1 X S-1. Certain of these substrates are also highly selective. For example, the most specific substrate for human plasmin, (Cbz-Phe-Arg-NH2)-Rhodamine, is not hydrolysed by human thrombin, and the most specific substrate for human thrombin, (Cbz-Pro-Arg-NH)2-Rhodamine, is one of the least specific substrates for human plasmin. Comparison of the kinetic constants for hydrolysis of the dipeptide substrates with that of the single amino acid derivative, (Cbz-Arg-NH)2-Rhodamine, indicates that selection of the proper amino acid residue in the P2 position can effect large increases in substrate specificity. This occurs primarily as a result of an increase in kcat. as opposed to a decrease in Km and, in certain cases, is accompanied by a large increase in selectivity. Because of their high degree of sensitivity and selectivity, these Rhodamine-based dipeptide compounds should be extremely useful substrates for studying serine proteinases.


2021 ◽  
Vol 18 ◽  
Author(s):  
Sarah Kappler ◽  
Andreas Siebert ◽  
Uli Kazmaier

Introduction: Miuraenamides belong to marine natural compounds with interesting biological properties. Materials and Methods: They initiate polymerization of monomeric actin and therefore show high cytotoxicity by influencing the cytoskeleton. New derivatives of the miuraenamides have been synthesized containing a N-methylated amide bond instead of the more easily hydrolysable ester in the natural products. Results: Incorporation of an aromatic side chain onto the C-terminal amino acid of the tripeptide fragment also led to highly active new miuraenamides. Conclusion: We could show that the ester bond of the natural product miuraenamide can be replaced by an N-methyl amide. The yields in the cyclization step are high and generally much better that with the corresponding esters. On the other hand, the biological activity of the new amide analogs are lower compared to the natural products, but the activity can significantly be increased by incorporation of a p-nitrophenyl group at the C-terminus of the peptide fragment.


2014 ◽  
Vol 10 ◽  
pp. 1919-1932 ◽  
Author(s):  
Mahesh K Lakshman ◽  
Manish K Singh ◽  
Mukesh Kumar ◽  
Raghu Ram Chamala ◽  
Vijayender R Yedulla ◽  
...  

(1H-Benzo[d][1,2,3]triazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (BOP), 1H-benzo[d][1,2,3]triazol-1-yl 4-methylbenzenesulfonate (Bt-OTs), and 3H-[1,2,3]triazolo[4,5-b]pyridine-3-yl 4-methylbenzenesulfonate (At-OTs) are classically utilized in peptide synthesis for amide-bond formation. However, a previously undescribed reaction of these compounds with alcohols in the presence of a base, leads to 1-alkoxy-1H-benzo- (Bt-OR) and 7-azabenzotriazoles (At-OR). Although BOP undergoes reactions with alcohols to furnish 1-alkoxy-1H-benzotriazoles, Bt-OTs proved to be superior. Both, primary and secondary alcohols undergo reaction under generally mild reaction conditions. Correspondingly, 1-alkoxy-1H-7-azabenzotriazoles were synthesized from At-OTs. Mechanistically, there are three pathways by which these peptide-coupling agents can react with alcohols. From 31P{1H}, [18O]-labeling, and other chemical experiments, phosphonium and tosylate derivatives of alcohols seem to be intermediates. These then react with BtO− and AtO− produced in situ. In order to demonstrate broader utility, this novel reaction has been used to prepare a series of acyclic nucleoside-like compounds. Because BtO− is a nucleofuge, several Bt-OCH2Ar substrates have been evaluated in nucleophilic substitution reactions. Finally, the possible formation of Pd π–allyl complexes by departure of BtO− has been queried. Thus, alpha-allylation of three cyclic ketones was evaluated with 1-(cinnamyloxy)-1H-benzo[d][1,2,3]triazole, via in situ formation of pyrrolidine enamines and Pd catalysis.


1969 ◽  
Vol 23 ◽  
pp. 1155-1167 ◽  
Author(s):  
Ole Buchardt ◽  
Philip L. Kumler ◽  
Christian Lohse ◽  
Kurt Andersson ◽  
Alf A. Lindberg ◽  
...  

2015 ◽  
Vol 11 ◽  
pp. 2029-2037 ◽  
Author(s):  
Christine Cychon ◽  
Ellen Lichte ◽  
Matthias Köck

The chemical investigation of the Caribbean sponge Agelas citrina revealed four new pyrrole–imidazole alkaloids (PIAs), the citrinamines A–D (1–4) and the bromopyrrole alkaloid N-methylagelongine (5). All citrinamines are dimers of hymenidin (6) which was also isolated from this sponge as the major metabolite. Citrinamines A (1) and B (2) are derivatives of the PIA dimer mauritiamine (7), whereas citrinamine C (3) is derived from the PIA dimer nagelamide B (8). Citrinamine D (4) shows an uncommon linkage between the imidazole rings of both monomeric units as it is only observed in the benzocyclobutane ring moiety of benzosceptrins A–C (9–11). Compound 5 is the N-methyl derivative of agelongine (12) which consist of a pyridinium ring and an ester linkage instead of the aminoimidazole moiety and the common amide bond in PIAs.


1982 ◽  
Vol 60 (19) ◽  
pp. 2451-2455 ◽  
Author(s):  
Mohsin A. Khan ◽  
Donald F. Tavares ◽  
Arvi Rauk

The three fluorine atoms of N,N-dialkyl amide and chloride derivatives of 2-methoxy-2-phenyl-3,3,3-trifluoropropanoic acid are magnetically nonequivalent below –60 °C and exhibit a clear ABC coupling pattern from which chemical shifts and geminal coupling constants are readily derived. The chemical shifts span a range of about 10 ppm and the geminal coupling constants average about 110 Hz. A five bond coupling of about 5 Hz is observed between the hydrogens of the methoxy group and one of the nonequivalent fluorine atoms of the trifluoromethyl group. Barriers to the hindered rotation about the single bond to the trifluoromethyl group are in the range 36–46 kJ/mol.


1984 ◽  
Vol 62 (12) ◽  
pp. 2661-2666 ◽  
Author(s):  
Giovanni Valle ◽  
Gian Maria Bonora ◽  
Claudio Toniolo

An analysis of the preferred conformations and modes of self-association of the N-fluoren-9-methoxycarbonyl derivatives of L-alanine and α-aminoisobutyric acid was performed in solution and in the solid state using infrared absorption, 1H nuclear magnetic resonance, and X-ray diffraction. In a solvent of low polarity (deuterochloroform) non-associated and self-associated species (involving predominantly the hydroxyl and carbonyl groups of the carboxylic acid moiety) simultaneously occur. At high dilution, where self-association is absent, the amount of intramolecularly H-bonded forms, if any, should be extremely small. Z(trans) [Formula: see text]E(cis) isomerism about the amide bond of the secondary urethane moiety was observed only for the less bulky L-alanine derivative. In the solid state all H-bonding donors and acceptors of the L-alanine and α-aminoisobutyric acid derivatives take part to complex schemes of intermolecular H-bonds. In the L-alanine derivative, crystallized as monohydrate, most of the intermolecular H-bonds involve the water molecule. Intramolecular H-bonds are not observed in either compound. The conformation about the secondary urethane CO—NH bond is Z(trans) in both compounds. Both L-alanine and α-aminoisobutyric acid residues are partially folded. The observation of the long C(sp3)—O bond of the fluoren-9-yl-methoxycarbonyl moiety might contribute to explain the unexpected experimental result that this protecting group can be removed by catalytic hydrogenation.


Synthesis ◽  
2019 ◽  
Vol 51 (08) ◽  
pp. 1779-1790
Author(s):  
Ana Koperniku ◽  
Maryam Zamiri ◽  
David Grierson

The S-benzyl thioester and methyl ester derivatives of a representative 4-pyridinone-based carboxylic acid were sufficiently activated to react efficiently in amide coupling reactions with the amide anion generated in situ from the N-trimethylsilyl derivative of different weakly nucleophilic heteroarylamines. In acetonitrile as solvent, the precipitated diheteroarylamide products were isolated in pure form by vacuum filtration. This simple amide bond forming protocol can be readily adapted to the parallel synthesis of compound libraries.


1990 ◽  
Vol 43 (11) ◽  
pp. 1817 ◽  
Author(s):  
JFK Wilshire

The discovery of a new acid-catalysed monodentate N → C aromatic rearrangement, namely the phthalimidomethyl rearrangement, is reported. In this rearrangement, discovered during the reaction of N-hydroxymethylphthalimide with certain alkyl N-(4-nitrophenyl)carbamates in concentrated sulfuric acid solution, the phthalimidomethyl group migrates from its initial location on the nitrogen atom of the carbamate function to a carbon atom of the nitrophenyl group. Evidence, provided by an appropriate 'crossover' experiment, indicates that the rearrangement is intermolecular. Hindered rotation about the N(carbamoyl)-aryl bond of the N-phthalimidomethyl derivatives of both ethyl and methyl N-(2,4-dinitrophenyl)carbamate is reported.


2015 ◽  
Vol 87 (4) ◽  
pp. 415-439 ◽  
Author(s):  
Catalin V. Maftei ◽  
Elena Fodor ◽  
Peter G. Jones ◽  
M. Heiko Franz ◽  
Corneliu M. Davidescu ◽  
...  

AbstractNew chiral derivatives of 15,35,55,75-tetra-tert-butyl-1,3,5,7(1,3)-tetrabenzenacyclooctaphane-12,32,52,72-tetraol [(1); tert-butyl-calix[4]-arene] were synthesized by coupling modified chiral quinuclidines derived from the natural-product-based alkaloids quincorine and quincoridine with the calix[4]arene 1 via either an ester bond or an amide bond. X-ray analyses of two products were performed. Applications of the products in asymmetric catalytic hydrogen transfer reactions are described. A protocol is presented to multi-substitute calix[4]arene at the methylene bridges, resulting in, e.g., 2,6-carboxyl-all-tert-butyl all-methoxy-calix[4]arene.


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