scholarly journals Structural rearrangement of the intracellular domains during AMPA receptor activation

2016 ◽  
Vol 113 (27) ◽  
pp. E3950-E3959 ◽  
Author(s):  
Linda G. Zachariassen ◽  
Ljudmila Katchan ◽  
Anna G. Jensen ◽  
Darryl S. Pickering ◽  
Andrew J. R. Plested ◽  
...  

α-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptors (AMPARs) are ligand-gated ion channels that mediate the majority of fast excitatory neurotransmission in the central nervous system. Despite recent advances in structural studies of AMPARs, information about the specific conformational changes that underlie receptor function is lacking. Here, we used single and dual insertion of GFP variants at various positions in AMPAR subunits to enable measurements of conformational changes using fluorescence resonance energy transfer (FRET) in live cells. We produced dual CFP/YFP-tagged GluA2 subunit constructs that had normal activity and displayed intrareceptor FRET. We used fluorescence lifetime imaging microscopy (FLIM) in live HEK293 cells to determine distinct steady-state FRET efficiencies in the presence of different ligands, suggesting a dynamic picture of the resting state. Patch-clamp fluorometry of the double- and single-insert constructs showed that both the intracellular C-terminal domain (CTD) and the loop region between the M1 and M2 helices move during activation and the CTD is detached from the membrane. Our time-resolved measurements revealed unexpectedly complex fluorescence changes within these intracellular domains, providing clues as to how posttranslational modifications and receptor function interact.

2016 ◽  
Vol 113 (50) ◽  
pp. 14348-14353 ◽  
Author(s):  
Stephanie Voss ◽  
Dennis M. Krüger ◽  
Oliver Koch ◽  
Yao-Wen Wu

Ras-like small GTPases function as molecular switches and regulate diverse cellular events. To examine the dynamics of signaling requires spatiotemporal visualization of their activity in the cell. Current small GTPase sensors rely on specific effector domains that are available for only a small number of GTPases and compete for endogenous regulator/effector binding. Here, we describe versatile conformational sensors for GTPase activity (COSGAs) based on the conserved GTPase fold. Conformational changes upon GDP/GTP exchange were directly observed in solution, on beads, and in live cells by Förster resonance energy transfer (FRET). The COSGAs allow for monitoring of Rab1 and K-Ras activity in live cells using fluorescence lifetime imaging microscopy. We found that Rab1 is largely active in the cytoplasm and inactive at the Golgi, suggesting that the Golgi serves as the terminal of the Rab1 functional cycle. K-Ras displays polarized activity at the plasma membrane, with less activity at the edge of the cell and membrane ruffles.


2009 ◽  
Vol 23 (5) ◽  
pp. 590-599 ◽  
Author(s):  
Jean-Pierre Vilardaga ◽  
Moritz Bünemann ◽  
Timothy N. Feinstein ◽  
Nevin Lambert ◽  
Viacheslav O. Nikolaev ◽  
...  

Abstract Many biochemical pathways are driven by G protein-coupled receptors, cell surface proteins that convert the binding of extracellular chemical, sensory, and mechanical stimuli into cellular signals. Their interaction with various ligands triggers receptor activation that typically couples to and activates heterotrimeric G proteins, which in turn control the propagation of secondary messenger molecules (e.g. cAMP) involved in critically important physiological processes (e.g. heart beat). Successful transfer of information from ligand binding events to intracellular signaling cascades involves a dynamic interplay between ligands, receptors, and G proteins. The development of Förster resonance energy transfer and bioluminescence resonance energy transfer-based methods has now permitted the kinetic analysis of initial steps involved in G protein-coupled receptor-mediated signaling in live cells and in systems as diverse as neurotransmitter and hormone signaling. The direct measurement of ligand efficacy at the level of the receptor by Förster resonance energy transfer is also now possible and allows intrinsic efficacies of clinical drugs to be linked with the effect of receptor polymorphisms.


2007 ◽  
Vol 176 (1) ◽  
pp. 51-63 ◽  
Author(s):  
Dawen Cai ◽  
Adam D. Hoppe ◽  
Joel A. Swanson ◽  
Kristen J. Verhey

Kinesin motor proteins drive the transport of cellular cargoes along microtubule tracks. How motor protein activity is controlled in cells is unresolved, but it is likely coupled to changes in protein conformation and cargo association. By applying the quantitative method fluorescence resonance energy transfer (FRET) stoichiometry to fluorescent protein (FP)–labeled kinesin heavy chain (KHC) and kinesin light chain (KLC) subunits in live cells, we studied the overall structural organization and conformation of Kinesin-1 in the active and inactive states. Inactive Kinesin-1 molecules are folded and autoinhibited such that the KHC tail blocks the initial interaction of the KHC motor with the microtubule. In addition, in the inactive state, the KHC motor domains are pushed apart by the KLC subunit. Thus, FRET stoichiometry reveals conformational changes of a protein complex in live cells. For Kinesin-1, activation requires a global conformational change that separates the KHC motor and tail domains and a local conformational change that moves the KHC motor domains closer together.


2018 ◽  
Author(s):  
Jiacheng Zhang ◽  
Bhaskar Chetnani ◽  
Eric D. Cormack ◽  
Wei Liu ◽  
Alfonso Mondragón ◽  
...  

ABSTRACTT-box riboswitches are cis-regulatory RNA elements that regulate mRNAs encoding for aminoacyl tRNA synthetases or proteins involved in amino acid biosynthesis and transport. Rather than using small molecules as their ligands, as do most riboswitches, T-box riboswitches uniquely bind tRNA and sense their aminoacylated state. Whereas the anticodon and elbow regions of the tRNA interact with Stem I, located in the 5’ portion of the T-box, sensing of the aminoacylation state involves direct binding of the NCCA sequence at the tRNA 3’ end to the anti-terminator sequence located in the 3’ portion of the T-box. However, the kinetic trajectory that describes how each of these interactions are established temporally during tRNA binding remains unclear. Using singlemolecule fluorescence resonance energy transfer (smFRET), we demonstrate that tRNA binds to the riboswitch in a two-step process, first with anticodon recognition followed by NCCA binding, with the second step accompanied by an inward motion of the 3’ portion of the T-box riboswitch relative to Stem I. By using site-specific mutants, we further show that the T-loop region of the T-box significantly contributes to the first binding step, and that the K-turn region of the T-box influences both binding steps, but with a more dramatic effect on the second binding step. Our results set up a kinetic framework describing tRNA binding by T-box riboswitches and highlight the important roles of several T-box structural elements in regulating each binding step.SIGNIFICANCEBacteria commonly use riboswitches, cis-regulatory RNA elements, to regulate the transcription or translation of the mRNAs upon sensing signals. Unlike small molecule binding riboswitches, T-box riboswitches bind tRNA and sense their aminoacylated state. T-box modular structural elements that recognize different parts of a tRNA have been identified, however, how each of these interactions is established temporally during tRNA binding remains unclear. Our study reveals that tRNA binds to the riboswitch in a two-step mechanism, with anticodon recognition first, followed by binding to the NCCA sequence at the 3’ end of the tRNA with concomitant conformational changes in the T-box. Our results also highlight the importance of the modular structural elements of the T-box in each of the binding steps.


2021 ◽  
Author(s):  
Katherina Hemmen ◽  
Susobhan Choudhury ◽  
Mike Friedrich ◽  
Johannes Balkenhol ◽  
Felix Knote ◽  
...  

We present a protocol and workflow to perform live cell dual-color fluorescence crosscorrelation spectroscopy (FCCS) combined with Förster Resonance Energy transfer (FRET) to study membrane receptor dynamics in live cells using modern fluorescence labeling techniques. In dual-color FCCS, where the fluctuations in fluorescence intensity represents the dynamical "fingerprint" of the respective fluorescent biomolecule, we can probe co-diffusion or binding of the receptors. FRET, with its high sensitivity to molecular distances, serves as a well-known "nanoruler" to monitor intramolecular changes. Taken together, conformational changes and key parameters such as local receptor concentrations, and mobility constants become accessible in cellular settings. Quantitative fluorescence approaches are challenging in cells due to high noise levels and the vulnerable sample itself. We will show how to perform the experiments including the calibration steps. We use dual-color labeled β2-adrenergic receptor (β2AR) labeled (eGFP and SNAPtag-TAMRA). We will guide you step-by-step through the data analysis procedure using open-source software and provide templates that are easy to customize. Our guideline enables researchers to unravel molecular interactions of biomolecules in live cells in situ with high reliability despite the limited signal-to-noise levels in live cell experiments. The operational window of FRET and particularly FCCS at low concentrations allows quantitative analysis near-physiological conditions.


eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Qian Liu ◽  
Elizabeth J Osterlund ◽  
Xiaoke Chi ◽  
Justin Pogmore ◽  
Brian Leber ◽  
...  

Tumor initiation, progression and resistance to chemotherapy rely on cancer cells bypassing programmed cell death by apoptosis. We report that unlike other pro-apoptotic proteins, Bim contains two distinct binding sites for the anti-apoptotic proteins Bcl-XL and Bcl-2. These include the BH3 sequence shared with other pro-apoptotic proteins and an unexpected sequence located near the Bim carboxyl-terminus (residues 181–192). Using automated Fluorescence Lifetime Imaging Microscopy - Fluorescence Resonance Energy Transfer (FLIM-FRET) we show that the two binding interfaces enable Bim to double-bolt lock Bcl-XL and Bcl-2 in complexes resistant to displacement by BH3-mimetic drugs currently in use or being evaluated for cancer therapy. Quantifying in live cells the contributions of individual amino acids revealed that residue L185 previously thought involved in binding Bim to membranes, instead contributes to binding to anti-apoptotic proteins. This double-bolt lock mechanism has profound implications for the utility of BH3-mimetics as drugs. ​


Blood ◽  
2011 ◽  
Vol 118 (21) ◽  
pp. 1143-1143 ◽  
Author(s):  
Abdelouahid El-Khattouti ◽  
Volker R. Stoldt ◽  
Marianna Gyenes ◽  
Khon C. Huynh ◽  
Rudiger E. Scharf

Abstract Abstract 1143 Background and Objectives: Activation of αIIbβ3 is the final step leading to platelet aggregation. The polymorphism of the β3 gene of αIIbβ3 results in an amino acid exchange with a leucin (HPA-1a) or a prolin (HPA-1b) at residue 33. We have shown in patients with coronary artery disease that the HPA-1b variant of αIIbβ3 is associated with premature manifestation of acute myocardial infarction (MI) (JTH 2005). Autopsy studies have confirmed that HPA-1b is strongly associated with coronary thrombi after MI. Recently, we have documented that HPA-1b platelets display increased adhesion, increased thrombus stability, and increased outside-in signaling corresponding to their prothrombotic character. To explore the nature of this phenotype in further detail, we have now generated a model overexpressing fluorescent proteins fused with αIIbβ3 in transfected cells to assess the postulated differences between both HPA-1 isoforms with regard to αIIbβ3 activation and its concomitant conformational changes. Materials and Methods: Transfected and fluorescently tagged HEK293 cells stably expressing either HPA-1a or HPA-1b of αIIbβ3 were generated. The cyan (CFP) and yellow fluorescent protein (YFP) were cloned to the C-termini of the β3 and αIIb subunits prior to cell transfection. To explore conformational changes in the cytoplasmic tails and the activation of integrin, dynamic measurements were performed by fluorescence resonance energy transfer (FRET) under static and dynamic conditions (shear rates of 100 to 1600 s−1) using an established flow model. Results: Functional integrity of both integrin variants and correct membrane insertion were examined by flow cytometry and documented intact activation of αIIbβ3 in the transfected cells upon phorbol 12-myristate 13-acetate-induced (PMA)-induced stimulation of protein kinase C and specific binding of alexa647 fibrinogen (Fg) to αIIbβ3 upon inside-out activation. In the presence of abciximab, binding of alexa647 Fg to αIIbβ3 was completely blocked in both isoforms (PMA, mean: 119 units vs. abciximab 10 units). Upon cell adhesion under static condition and subsequent outside-in signaling, the HPA-1b isoform displayed a quantitatively different activation pattern than HPA-1a, as detected by FRET analyses. Thus, FRET signals, defined by the ratio of acceptor to donor fluoresecence intensity, revealed a faster and more distinct decrease in HPA-b (67+5) than in HPA-1a (75+6) (HPA-1b vs. HPA-1a, p=0.0053). This finding corresponds to are more pronounced spatial separation of the cytoplasmic tails in the HPA-1b variant of αIIbβ3. By contrast, stimulation with PMA (1 μM) caused an opposite effect in HPA-1a transfectants, as compared to HPA-1b (p<0.001), indicative of a distinct property upon inside-out activation. Upon interaction of αIIbβ3 with immobilized fibrinogen to induce outside-in signaling, HPA-1b exhibited an increased activation of the phosphotyrosine motif at residue Y418 (pY418) of the αIIbβ3-associated Src kinase, as compared with HPA-1a (p<0.05). No such difference was observed in Src phosphorylation upon stimulation with PMA (inside-out signaling). These findings suggest that the HPA-1 polymorphism of αIIbβ3 can modulate indeed outside-in signaling upon interaction of the transfectants with immobilized fibrinogen. When αIIbβ3-transfected HEK293 cells adherent onto immobilized fibrinogen were exposed to increasing arterial shear rates (800 to 1600 s−1), FRET analyses and digital imaging confirmed a more pronounced spatial separation of the cytoplasmic tails (αIIb-CFP; β3-YFP) in HPA-1b than in HPA-1a cells (p=0.0029). Likewise, the rate of residual adherent cells was significantly higher with HPA-1b than HPA-1a cell clones (p<0.0001). Interestingly, only arterial (> 800 s−1) but not venous shear rates increased the observed conformational changes in adherent HPA-1b cells. Conclusions: Our findings suggest that the prothrombotic phenotype of the HPA-1b variant is caused by increased outside-in signaling. The observed quantitative differences between both HPA-1 isoforms of αIIbβ3 are related to distinct conformational changes in their C-terminal cytoplasmic tails. These findings are in agreement with the contention that the HPA-1 polymorphism of αIIbβ3 can have a major impact on platelet adhesion, aggregation and thrombus formation under pathological conditions resulting from abnormally high shear stress. Disclosures: No relevant conflicts of interest to declare.


2019 ◽  
Vol 116 (15) ◽  
pp. 7323-7332 ◽  
Author(s):  
Jieqiong Lou ◽  
Lorenzo Scipioni ◽  
Belinda K. Wright ◽  
Tara K. Bartolec ◽  
Jessie Zhang ◽  
...  

To investigate how chromatin architecture is spatiotemporally organized at a double-strand break (DSB) repair locus, we established a biophysical method to quantify chromatin compaction at the nucleosome level during the DNA damage response (DDR). The method is based on phasor image-correlation spectroscopy of histone fluorescence lifetime imaging microscopy (FLIM)-Förster resonance energy transfer (FRET) microscopy data acquired in live cells coexpressing H2B-eGFP and H2B-mCherry. This multiplexed approach generates spatiotemporal maps of nuclear-wide chromatin compaction that, when coupled with laser microirradiation-induced DSBs, quantify the size, stability, and spacing between compact chromatin foci throughout the DDR. Using this technology, we identify that ataxia–telangiectasia mutated (ATM) and RNF8 regulate rapid chromatin decompaction at DSBs and formation of compact chromatin foci surrounding the repair locus. This chromatin architecture serves to demarcate the repair locus from the surrounding nuclear environment and modulate 53BP1 mobility.


2019 ◽  
Author(s):  
Jizheng Guo ◽  
Ren Zhao ◽  
Muyao Zhou ◽  
Jie Li ◽  
Xiaoqiang Yao ◽  
...  

Abstract BackgroundTRPP2 (Polycystin-2) is a Ca2+ permeable nonselective cationic channel essential for maintaining physiological function in live cells. Stromal interaction molecule 1 (STIM1) is an important Ca2+ sensor in store-operated Ca2+ entry (SOCE). Both TRPP2 and STIM1 are expressed in endoplasmic reticular membrane and participate in Ca2+ signaling, suggesting a physical interaction and functional synergism.MethodsWe performed co-localization, co-immunoprecipitation, and fluorescence resonance energy transfer assay to identify the interactions of TRPP2 and STIM1 in transfected HEK293 cells and native vascular smooth muscle cells (VSMCs). The function of the TRPP2-STIM1 complex in TG or ATP-induced SOCE was explored using specific siRNA. Further, we created TRPP2 CKO mouse to investigate the functional role of TRPP2 in agonist-induced vessel contraction.ResultsTRPP2 and STIM1 form a complex in transfected HEK293 cells and native VSMCs. Genetic manipulations with TRPP2 siRNA, dominant negative TRPP2 or STIM1 siRNA significantly suppressed adenosine triphosphate (ATP) and thapsigargin (TG)-induced intracellular Ca2+ release and SOCE in HEK293 cells. Inositol triphosphate receptor inhibitor 2-aminoethyl diphenylborinate (2APB) abolished ATP-induced Ca2+ release and SOCE in HEK293 cells. In addition, TRPP2 and STIM1 knockdown significantly inhibited ATP- and TG-induced STIM1 puncta formation and SOCE in VSMCs. Importantly, knockdown of TRPP2 and STIM1 or conditional knockout TRPP2 markedly suppressed agonist-induced mouse aorta contraction.Conclusions Our data indicate that TRPP2 and STIM1 are physically associated and form a functional complex to regulate agonist-induced intracellular Ca2+ mobilization, SOCE and blood vessel tone.


2020 ◽  
Author(s):  
Jizheng Guo ◽  
Ren Zhao ◽  
MuYao Zhou ◽  
Jie Li ◽  
Xiaoqiang Yao ◽  
...  

Abstract Background: Polycystin-2 (TRPP2) is a Ca2+ permeable nonselective cationic channel essential for maintaining physiological function in live cells. Stromal interaction molecule 1 (STIM1) is an important Ca2+ sensor in store-operated Ca2+ entry (SOCE). Both TRPP2 and STIM1 are expressed in endoplasmic reticular membrane and participate in Ca2+ signaling, suggesting a physical interaction and functional synergism.Methods: We performed co-localization, co-immunoprecipitation, and fluorescence resonance energy transfer assay to identify the interactions of TRPP2 and STIM1 in transfected HEK293 cells and native vascular smooth muscle cells (VSMCs). The function of the TRPP2-STIM1 complex in thapsigargin (TG) or adenosine triphosphate (ATP)-induced SOCE was explored using specific small interfering RNA (siRNA). Further, we created TRPP2 conditional knockout (CKO) mouse to investigate the functional role of TRPP2 in agonist-induced vessel contraction.Results: TRPP2 and STIM1 form a complex in transfected HEK293 cells and native VSMCs. Genetic manipulations with TRPP2 siRNA, dominant negative TRPP2 or STIM1 siRNA significantly suppressed ATP and TG-induced intracellular Ca2+ release and SOCE in HEK293 cells. Inositol triphosphate receptor inhibitor 2-aminoethyl diphenylborinate (2APB) abolished ATP-induced Ca2+ release and SOCE in HEK293 cells. In addition, TRPP2 and STIM1 knockdown significantly inhibited ATP- and TG-induced STIM1 puncta formation and SOCE in VSMCs. Importantly, knockdown of TRPP2 and STIM1 or conditional knockout TRPP2 markedly suppressed agonist-induced mouse aorta contraction.Conclusions : Our data indicate that TRPP2 and STIM1 are physically associated and form a functional complex to regulate agonist-induced intracellular Ca2+ mobilization, SOCE and blood vessel tone.


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