scholarly journals Exploring functional pairing between surface glycoconjugates and human galectins using programmable glycodendrimersomes

2018 ◽  
Vol 115 (11) ◽  
pp. E2509-E2518 ◽  
Author(s):  
Qi Xiao ◽  
Anna-Kristin Ludwig ◽  
Cecilia Romanò ◽  
Irene Buzzacchera ◽  
Samuel E. Sherman ◽  
...  

Precise translation of glycan-encoded information into cellular activity depends critically on highly specific functional pairing between glycans and their human lectin counter receptors. Sulfoglycolipids, such as sulfatides, are important glycolipid components of the biological membranes found in the nervous and immune systems. The optimal molecular and spatial design aspects of sulfated and nonsulfated glycans with high specificity for lectin-mediated bridging are unknown. To elucidate how different molecular and spatial aspects combine to ensure the high specificity of lectin-mediated bridging, a bottom-up toolbox is devised. To this end, negatively surface-charged glycodendrimersomes (GDSs), of different nanoscale dimensions, containing sulfo-lactose groups are self-assembled in buffer from a synthetic sulfatide mimic: Janus glycodendrimer (JGD) containing a 3′-O-sulfo-lactose headgroup. Also prepared for comparative analysis are GDSs with nonsulfated lactose, a common epitope of human membranes. These self-assembled GDSs are employed in aggregation assays with 15 galectins, comprising disease-related human galectins, and other natural and engineered variants from four families, having homodimeric, heterodimeric, and chimera architectures. There are pronounced differences in aggregation capacity between human homodimeric and heterodimeric galectins, and also with respect to their responsiveness to the charge of carbohydrate-derived ligand. Assays reveal strong differential impact of ligand surface charge and density, as well as lectin concentration and structure, on the extent of surface cross-linking. These findings demonstrate how synthetic JGD-headgroup tailoring teamed with protein engineering and network assays can help explain how molecular matchmaking operates in the cellular context of glycan and lectin complexity.

Author(s):  
Yunfei Li ◽  
Shengde Liu ◽  
Lili Cao ◽  
Yujie Luo ◽  
Hongqiang Du ◽  
...  

AbstractRNA-protein interactions play essential roles in tuning gene expression at RNA level and modulating the function of proteins. Abnormal RNA-protein interactions lead to cell dysfunction and human diseases. Therefore, mapping networks of RNA-protein interactions is crucial for understanding cellular mechanism and pathogenesis of diseases. Different practical protein-centric methods for studying RNA-protein interactions has been reported, but few RNA-centric methods exist. Here, we developed CRISPR-based RNA proximity proteomics (CBRPP), a new RNA-centric method to identify proteins associated with the target RNA in native cellular context without cross-linking or RNA manipulation in vitro. CBRPP is based on a fusion of dCas13 and proximity-based labeling (PBL) enzyme. dCas13 can deliver PBL enzyme to the target RNA with high specificity, while PBL enzyme labels the surrounding proteins of the target RNA, which are then identified by mass spectrometry.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Y. Tong ◽  
G. R. Berdiyorov ◽  
A. Sinopoli ◽  
M. E. Madjet ◽  
V. A. Esaulov ◽  
...  

AbstractThe stability of the molecular self-assembled monolayers (SAMs) is of vital importance to the performance of the molecular electronics and their integration to the future electronics devices. Here we study the effect of electron irradiation-induced cross-linking on the stability of self-assembled monolayer of aromatic 5,5′-bis(mercaptomethyl)-2,2′-bipyridine [BPD; HS-CH2-(C5H3N)2-CH2-SH] on Au (111) single crystal surface. As a refence, we also study the properties of SAMs of electron saturated 1-dodecanethiol [C12; CH3-(CH2)11-SH] molecules. The stability of the considered SAMs before and after electron-irradiation is studied using low energy Ar+ cluster depth profiling monitored by recording the X-ray photoelectron spectroscopy (XPS) core level spectra and the UV-photoelectron spectroscopy (UPS) in the valance band range. The results indicate a stronger mechanical stability of BPD SAMs than the C12 SAMs. The stability of BPD SAMs enhances further after electron irradiation due to intermolecular cross-linking, whereas the electron irradiation results in deterioration of C12 molecules due to the saturated nature of the molecules. The depth profiling time of the cross-linked BPD SAM is more than 4 and 8 times longer than the profiling time obtained for pristine and BPD and C12 SAMs, respectively. The UPS results are supported by density functional theory calculations, which show qualitative agreement with the experiment and enable us to interpret the features in the XPS spectra during the etching process for structural characterization. The obtained results offer helpful options to estimate the structural stability of SAMs which is a key factor for the fabrication of molecular devices.


Nanoscale ◽  
2019 ◽  
Vol 11 (39) ◽  
pp. 18046-18051 ◽  
Author(s):  
Boya Zhang ◽  
Qiang Wang ◽  
Yunxiao Zhang ◽  
Wenqiang Gao ◽  
Yicen Hou ◽  
...  

By mimicking the layered structure of nacre, we successfully fabricated a nano-laminar coating on high-voltage insulators. The coating is demonstrated to achieve a higher flashover strength by effectively dissipating surface charge under dc stress.


ChemPhysChem ◽  
2020 ◽  
Vol 21 (13) ◽  
pp. 1474-1482 ◽  
Author(s):  
Steffan Møller Sønderskov ◽  
Lasse Hyldgaard Klausen ◽  
Sebastian Amland Skaanvik ◽  
Xiaojun Han ◽  
Mingdong Dong

2011 ◽  
Vol 45 (2) ◽  
pp. 225-229 ◽  
Author(s):  
Z. F. Krasilnik ◽  
K. E. Kudryavtsev ◽  
A. N. Kachemtsev ◽  
D. N. Lobanov ◽  
A. V. Novikov ◽  
...  

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