scholarly journals Comparative genomics provides insights into the aquatic adaptations of mammals

2021 ◽  
Vol 118 (37) ◽  
pp. e2106080118
Author(s):  
Yuan Yuan ◽  
Yaolei Zhang ◽  
Peijun Zhang ◽  
Chang Liu ◽  
Jiahao Wang ◽  
...  
Keyword(s):  
Marine Mammal ◽  
Marine Mammals ◽  
Published Data ◽  
Aquatic Life ◽  
Genomic Variations ◽  
Deep Diving ◽  
Brown Adipose ◽  
Timing Pattern ◽  
Genome Assemblies ◽  
High Quality Genome

The ancestors of marine mammals once roamed the land and independently committed to an aquatic lifestyle. These macroevolutionary transitions have intrigued scientists for centuries. Here, we generated high-quality genome assemblies of 17 marine mammals (11 cetaceans and six pinnipeds), including eight assemblies at the chromosome level. Incorporating previously published data, we reconstructed the marine mammal phylogeny and population histories and identified numerous idiosyncratic and convergent genomic variations that possibly contributed to the transition from land to water in marine mammal lineages. Genes associated with the formation of blubber (NFIA), vascular development (SEMA3E), and heat production by brown adipose tissue (UCP1) had unique changes that may contribute to marine mammal thermoregulation. We also observed many lineage-specific changes in the marine mammals, including genes associated with deep diving and navigation. Our study advances understanding of the timing, pattern, and molecular changes associated with the evolution of mammalian lineages adapting to aquatic life.

Spectral-tuning mechanisms of marine mammal rhodopsins and correlations with foraging depth

2000 ◽  
Vol 17 (5) ◽  
pp. 781-788 ◽  
Author(s):  
JEFFRY I. FASICK ◽  
PHYLLIS R. ROBINSON
Keyword(s):  
Amino Acid ◽  
Marine Mammal ◽  
Molecular Basis ◽  
Marine Mammals ◽  
Visual Pigments ◽  
Amino Acid Substitutions ◽  
Spectral Tuning ◽  
Long Wavelength ◽  
Terrestrial Mammals ◽  
Deep Diving

It has been observed that deep-foraging marine mammals have visual pigments that are blue shifted in terms of their wavelength of maximal absorbance (λmax) when compared to analogous pigments from terrestrial mammals. The mechanisms underlying the spectral tuning of two of these blue-shifted pigments have recently been elucidated and depend on three amino acid substitutions (83Asn, 292Ser, and 299Ser) in dolphin rhodopsin, but only one amino acid substitution (308Ser) in the dolphin long-wavelength-sensitive pigment. The objective of this study was to investigate the molecular basis for changes in the spectral sensitivity of rod visual pigments from seven distantly related marine mammals. The results show a relationship between blue-shifted rhodopsins (λmax ≤ 490 nm), deep-diving foraging behavior, and the substitutions 83Asn and 292Ser. Species that forage primarily near the surface in coastal habitats have a rhodopsin with a λmax similar to that of terrestrial mammals (500 nm) and possess the substitutions 83Asp and 292Ala, identical to rhodopsins from terrestrial mammals.

scholarly journals Marine mammal distribution in Ecuador: surveys aboard a ship of opportunity as a means of monitoring relative abundance

10.5597/00235 ◽  
2018 ◽  
Vol 12 (1-2) ◽  
pp. 28-39
Author(s):  
Julia Elizabeth O'Hern ◽  
Michelle Sculley ◽  
Kerri Jean-Smith ◽  
Douglas Biggs ◽  
Niall Slowey ◽  
...  
Keyword(s):  
Marine Mammal ◽  
Marine Mammals ◽  
Galapagos Islands ◽  
Encounter Rate ◽  
Published Data ◽  
Galápagos Islands ◽  
Study Region ◽  
Stenella Coeruleoalba ◽  
Encounter Rates ◽  
Common Dolphins

Five marine mammal surveys between 2008 and 2011 were conducted aboard the Buque de Investigación Orion (the research vessel for the Oceanographic Institute of the Ecuadorian Navy) within oceanic waters adjacent to mainland Ecuador and the Galápagos Islands. The surveys dedicated extensive time in deep, offshore waters where cetaceans were not densely present. Sightings of 12 species were compared with an earlier survey aboard the B/I Orion in 2001 as well as with a subset of published data from three NOAA STAR (Stenella Abundance Research) surveys between 1999 and 2003. Additionally, a small boat, near-shore survey, was conducted during June 2010 among andnear the Galápagos Islands. Encounter rates ranged annually from 0.012 cetacean/km to 0.027 cetacean/km. The highest encounter rate aboard the B/I Orion took place during the April 2009 survey. In order to compare sightingrates between the B/I Orion and NOAA platforms, the average effective half-strip widths were used to determine encounter rates per area effectively searched. A zonation within the study region was observed between odontocete andbalaenopterid cetaceans as well as between striped (Stenella coeruleoalba) and short-beaked common dolphins (Delphinus delphis). Several methodological aspects of surveys and geographical features that may influence encounter rates and subsequent abundance estimates are discussed. This study demonstrates that vessels of opportunity provide a valuable means of studying open-ocean and coastal distributions of marine mammals. Possible methodological improvements, such as the use of high-power binoculars, that could increase the absolute number of sightings, the efficiency of these opportunistic surveys, and improve the sighting rates of more evasive species are discussed.

Recommendations for Sustainable Cetacean-Based Tourism in French Territories: A Review on the Industry and Current Management Actions

2020 ◽  
Vol 15 (3) ◽  
pp. 211-235
Author(s):  
Josephine Chazot ◽  
Ludovic Hoarau ◽  
Pamela Carzon ◽  
Jeanne Wagner ◽  
Stéphanie Sorby ◽  
...  
Keyword(s):  
Marine Mammal ◽  
Marine Mammals ◽  
French Polynesia ◽  
Legal Framework ◽  
Whale Watching ◽  
Cetacean Species ◽  
Commercial Activities ◽  
Management Actions ◽  
Overseas Territories ◽  
Socioeconomic Benefits

Whale-watching activities provide important socioeconomic benefits for local communities and constitute powerful platform incentives for marine mammals' protection or more broadly marine environments. However, these activities can cause adverse effects on targeted populations, with considerable downside associated risks of injuries and fatality for whale watchers during inwater interactions. France with its overseas territories has the second largest exclusive economic zone (EEZ), in which more than half of existing cetacean species are encountered. In these territories, recreational and commercial whale watching, including swim-with cetacean activities, have recently developed. Yet few studies focused on these activities and their associated impacts across French territories, leading to an unclear assessment of the situation. To address this issue, we reviewed cetaceans' occurrence within the French EEZ, whale-watching industry, targeted species, local management of marine mammal-based tourism activities, and regulations in France mainland and some overseas territories (Reunion Island, Mayotte, and French Polynesia). Fortyeight species are encountered in the French EEZ, and 15 are targeted by whale-watching activities. A total of 185 operators, including 34% offering swim-with-cetaceans tours, offered trips in France and overseas in 2019. While several more or less restrictive regulations exist locally, our results indicate that French's national legal framework for marine mammals' protection remains inadequate and insufficient to cope with the recent development of this activity. As conservation biologists, managers, and stakeholders from these French territories, we cooperated to provide general guidelines for a sustainable development of whale watching at a national scale. We urge (1) to legally acknowledge and regulate whale-watching commercial activities; (2) to create a national legal framework regarding whale watching and swim-with marine mammals practices, while accounting for local distinctiveness and disparities across regions; (3) to conduct more research to evaluate local short- and long-term impacts on targeted marine mammal populations as well as the socioeconomic benefits; and (4) to reinforce synergetic relations between the different stakeholders.

scholarly journals Genome sequencing of four culinary herbs reveals terpenoid genes underlying chemodiversity in the Nepetoideae

DNA Research ◽  
2020 ◽  
Vol 27 (3) ◽  
Author(s):  
Nolan Bornowski ◽  
John P Hamilton ◽  
Pan Liao ◽  
Joshua C Wood ◽  
Natalia Dudareva ◽  
...  
Keyword(s):  
Leaf Tissue ◽  
Terpene Synthases ◽  
Genomic Analyses ◽  
Genes Encoding ◽  
Medicinal Properties ◽  
Culinary Herbs ◽  
Rosmarinus Officinalis L ◽  
Origanum Majorana ◽  
Genome Assemblies ◽  
High Quality Genome

Abstract Species within the mint family, Lamiaceae, are widely used for their culinary, cultural, and medicinal properties due to production of a wide variety of specialized metabolites, especially terpenoids. To further our understanding of genome diversity in the Lamiaceae and to provide a resource for mining biochemical pathways, we generated high-quality genome assemblies of four economically important culinary herbs, namely, sweet basil (Ocimum basilicum L.), sweet marjoram (Origanum majorana L.), oregano (Origanum vulgare L.), and rosemary (Rosmarinus officinalis L.), and characterized their terpenoid diversity through metabolite profiling and genomic analyses. A total 25 monoterpenes and 11 sesquiterpenes were identified in leaf tissue from the 4 species. Genes encoding enzymes responsible for the biosynthesis of precursors for mono- and sesqui-terpene synthases were identified in all four species. Across all 4 species, a total of 235 terpene synthases were identified, ranging from 27 in O. majorana to 137 in the tetraploid O. basilicum. This study provides valuable resources for further investigation of the genetic basis of chemodiversity in these important culinary herbs.

scholarly journals Cetacean Research and Citizen Science in Kenya

2021 ◽  
Vol 8 ◽  
Author(s):  
Michael Gilbert Mwango’mbe ◽  
Jane Spilsbury ◽  
Steve Trott ◽  
Judith Nyunja ◽  
Nina Wambiji ◽  
...  
Keyword(s):  
Citizen Science ◽  
Marine Mammal ◽  
Marine Mammals ◽  
Bottlenose Dolphins ◽  
Conservation Strategies ◽  
Science Data ◽  
Pilot Whale ◽  
Area Of Interest ◽  
Mammal Conservation ◽  
Kenyan Coast

In 2011, several non-governmental and government agencies established the Kenya Marine Mammal Network (KMMN) to provide a platform for the consistent collection of data on marine mammals along the Kenyan coast, identify areas of importance and engage marine users and the general public in marine mammal conservation. Prior to the KMMN, relatively little was known about marine mammals in Kenya, limiting conservation strategies. The KMMN collects data nationwide through dedicated surveys, opportunistic sightings and participative citizen science, currently involving more than 100 contributors. This paper reviews data on sightings and strandings for small cetaceans in Kenya collated by the KMMN. From 2011 to 2019, 792 records of 11 species of small cetaceans were documented. The most frequently reported inshore species were the Indo-Pacific bottlenose dolphin and Indian Ocean humpback dolphin. Offshore species, included killer whales, short-finned pilot whale and long-snouted spinner dolphin. Indo-Pacific bottlenose dolphins, long-snouted spinner dolphins, striped dolphins and Risso’s dolphins were recorded through stranding reports. The efforts of the KMMN were disseminated through international meetings (International Whaling Commission, World Marine Mammal Conference), national status reports, outreach and social media. Data has also supported the identification of three IUCN Important Marine Mammal Areas and one Area of Interest in Kenya. Further research is needed to improve estimates of cetacean abundance and distribution, particularly in unstudied coastal areas, and to assess the extent of anthropogenic threats associated with fisheries, coastal and port development, seismic exercises and unregulated tourism. The expansion of the network should benefit from the participation of remote coastal fishing communities, government research agencies, tourism and seismic operations, among others. The KMMN demonstrated the value of dedicated and citizen science data to enhance marine mammal conservation strategies to boost awareness and eco-tourism and to bring the public and science closer together, promoting research and effective conservation efforts.

scholarly journals Resurgence of an apex marine predator and the decline in prey body size

2019 ◽  
Vol 116 (52) ◽  
pp. 26682-26689 ◽  
Author(s):  
Jan Ohlberger ◽  
Daniel E. Schindler ◽  
Eric J. Ward ◽  
Timothy E. Walsworth ◽  
Timothy E. Essington
Keyword(s):  
Life History ◽  
Body Size ◽  
Chinook Salmon ◽  
Marine Mammal ◽  
Marine Mammals ◽  
Size Structure ◽  
Economic Value ◽  
Killer Whales ◽  
Selective Predation ◽  
Marine Predator

In light of recent recoveries of marine mammal populations worldwide and heightened concern about their impacts on marine food webs and global fisheries, it has become increasingly important to understand the potential impacts of large marine mammal predators on prey populations and their life-history traits. In coastal waters of the northeast Pacific Ocean, marine mammals have increased in abundance over the past 40 to 50 y, including fish-eating killer whales that feed primarily on Chinook salmon. Chinook salmon, a species of high cultural and economic value, have exhibited marked declines in average size and age throughout most of their North American range. This raises the question of whether size-selective predation by marine mammals is generating these trends in life-history characteristics. Here we show that increased predation since the 1970s, but not fishery selection alone, can explain the changes in age and size structure observed for Chinook salmon populations along the west coast of North America. Simulations suggest that the decline in mean size results from the selective removal of large fish and an evolutionary shift toward faster growth and earlier maturation caused by selection. Our conclusion that intensifying predation by fish-eating killer whales contributes to the continuing decline in Chinook salmon body size points to conflicting management and conservation objectives for these two iconic species.

scholarly journals The impacts of climate change on marine mammals: early signs of significant problems

Oryx ◽  
2007 ◽  
Vol 41 (1) ◽  
pp. 19-26 ◽  
Author(s):  
Mark P. Simmonds ◽  
Stephen J. Isaac
Keyword(s):  
Climate Change ◽  
Marine Mammal ◽  
Marine Mammals ◽  
Delphinapterus Leucas ◽  
Polar Regions ◽  
Baleen Whale ◽  
Direct Observations ◽  
Management Plans ◽  
Conservation Plans ◽  
Impacts Of Climate Change

Climate change is now known to be affecting the oceans. It is widely anticipated that impacts on marine mammals will be mediated primarily via changes in prey distribution and abundance and that the more mobile (or otherwise adaptable) species may be able to respond to this to some extent. However, the extent of this adaptability is largely unknown. Meanwhile, within the last few years direct observations have been made of several marine mammal populations that illustrate reactions to climate change. These observations indicate that certain species and populations may be especially vulnerable, including those with a limited habitat range, such as the vaquita Phocoena sinus, or those for which sea ice provides an important part of their habitat, such as narwhals Monodon monoceros, bowhead Balaena mysticetus and beluga Delphinapterus leucas whales and polar bears Ursus maritimus. Similarly, there are concerns about those species that migrate to feeding grounds in polar regions because of rapidly changing conditions there, and this includes many baleen whale populations. This review highlights the need to take projected impacts into account in future conservation and management plans, including species assessments. How this should be done in an adequately precautionary manner offers a significant challenge to those involved in such processes, although it is possible to identify at this time at least some species and populations that may be regarded as especially vulnerable. Marine ecosystems modellers and marine mammal experts will need to work together to make such assessments and conservation plans as robust as possible.

scholarly journals The Antennal Pathway of Dragonfly Nymphs, from Sensilla to the Brain

Insects ◽  
2020 ◽  
Vol 11 (12) ◽  
pp. 886
Author(s):  
Silvana Piersanti ◽  
Manuela Rebora ◽  
Gianandrea Salerno ◽  
Sylvia Anton
Keyword(s):  
Brain Structure ◽  
Antennal Lobe ◽  
Sensory Information ◽  
Brain Structures ◽  
Brain Regions ◽  
Adult Brain ◽  
Published Data ◽  
Antennal Sensilla ◽  
Aquatic Life ◽  
The Brain

Dragonflies are hemimetabolous insects, switching from an aquatic life style as nymphs to aerial life as adults, confronted to different environmental cues. How sensory structures on the antennae and the brain regions processing the incoming information are adapted to the reception of fundamentally different sensory cues has not been investigated in hemimetabolous insects. Here we describe the antennal sensilla, the general brain structure, and the antennal sensory pathways in the last six nymphal instars of Libellula depressa, in comparison with earlier published data from adults, using scanning electron microscopy, and antennal receptor neuron and antennal lobe output neuron mass-tracing with tetramethylrhodamin. Brain structure was visualized with an anti-synapsin antibody. Differently from adults, the nymphal antennal flagellum harbors many mechanoreceptive sensilla, one olfactory, and two thermo-hygroreceptive sensilla at all investigated instars. The nymphal brain is very similar to the adult brain throughout development, despite the considerable differences in antennal sensilla and habitat. Like in adults, nymphal brains contain mushroom bodies lacking calyces and small aglomerular antennal lobes. Antennal fibers innervate the antennal lobe similar to adult brains and the gnathal ganglion more prominently than in adults. Similar brain structures are thus used in L. depressa nymphs and adults to process diverging sensory information.

scholarly journals Education in the genomics era: Generating high-quality genome assemblies in university courses

GigaScience ◽  
2020 ◽  
Vol 9 (6) ◽  
Author(s):  
Stefan Prost ◽  
Sven Winter ◽  
Jordi De Raad ◽  
Raphael T F Coimbra ◽  
Magnus Wolf ◽  
...  
Keyword(s):  
Low Cost ◽  
Genomic Data ◽  
Master's Level ◽  
Genome Data ◽  
Sequencing Technologies ◽  
Third Generation Sequencing ◽  
University Courses ◽  
Hands On ◽  
Genome Assemblies ◽  
High Quality Genome

Abstract Recent advances in genome sequencing technologies have simplified the generation of genome data and reduced the costs for genome assemblies, even for complex genomes like those of vertebrates. More practically oriented genomic courses can prepare university students for the increasing importance of genomic data used in biological and medical research. Low-cost third-generation sequencing technology, along with publicly available data, can be used to teach students how to process genomic data, assemble full chromosome-level genomes, and publish the results in peer-reviewed journals, or preprint servers. Here we outline experiences gained from 2 master's-level courses and discuss practical considerations for teaching hands-on genome assembly courses.

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