scholarly journals Spatially resolved assembly, connectivity, and structure of particle-associated and free-living bacterial communities in a high Arctic fjord

2021 ◽  
Author(s):  
Anand Jain ◽  
John Paul Balmonte ◽  
Richa Singh ◽  
Parli Venkateswaran Bhaskar ◽  
Kottekkatu Padinchati Krishnan
Keyword(s):  
Surface Waters ◽  
Bacterial Communities ◽  
Beta Diversity ◽  
Dispersal Limitation ◽  
High Arctic ◽  
Relative Influence ◽  
Free Living ◽  
Spatially Resolved ◽  
Deep Waters ◽  
Arctic Fjord

Abstract The assembly processes that underlie the composition and connectivity of free-living (FL) and particle-associated (PA) bacterial communities from surface to deep waters remain little understood. Here, using phylogenetic null modeling, we quantify the relative influence of selective and stochastic mechanisms that assemble FL and PA bacterial communities throughout the water column in a high Arctic fjord. We demonstrate that assembly processes acting on FL and PA are similar in surface waters, but become increasingly distinct in deep waters. As depth increases, the relative influence of homogeneous selection increases for FL but decreases for PA communities. In addition, dispersal limitation and variable selection increases with depth for PA, but not for FL communities, indicating increased residence time of taxa on particles and less frequent decolonization. As a consequence, beta-diversity of PA communities is greater in bottom than in surface waters. The limited connectivity between FL and PA communities with increasing depth leads to highly distinct FL and PA communities in bottom waters. Finally, depth-related trends for FL and PA beta diversity and connectivity in this study are consistent with previous observations in the open ocean, suggesting that assembly processes for FL and PA may also be distinct in other aquatic environments.

scholarly journals Spatial variability of particle-attached and free-living bacterial diversity in surface waters from the Mackenzie River to the Beaufort Sea (Canadian Arctic)

2012 ◽  
Vol 9 (12) ◽  
pp. 17401-17435 ◽  
Author(s):  
E. Ortega-Retuerta ◽  
F. Joux ◽  
W. H. Jeffrey ◽  
J.-F. Ghiglione
Keyword(s):  
Community Structure ◽  
Bacterial Community ◽  
16S Rrna ◽  
Surface Waters ◽  
Bacterial Communities ◽  
Canadian Arctic ◽  
Beaufort Sea ◽  
Free Living ◽  
Open Sea ◽  
Mackenzie River

Abstract. We explored the patterns of total and active bacterial community structure in a gradient covering surface waters from the Mackenzie River to the coastal Beaufort Sea, Canadian Arctic Ocean, with a particular focus on free-living vs. particle-attached communities. Capillary electrophoresis-single strand conformation polymorphism (CE-SSCP) showed significant differences when comparing river, coast and open sea bacterial community structures. In contrast to the river and coastal waters, total (16S rDNA-based) and active (16S rRNA-based) communities in the open sea samples were not significantly different, suggesting that most present bacterial groups were equally active in this area. Additionally, we observed significant differences between particle-attached (PA) and free-living (FL) bacterial communities in the open sea, but similar structure in the two fractions for coastal and river samples. Direct multivariate statistical analyses showed that total community structure was mainly driven by salinity (proxy of DOC and CDOM), suspended particles, amino acids and chlorophyll a. 16S rRNA genes pyrosequencing of selected samples confirmed these significant differences from river to sea and also between PA and FL fractions only in open sea samples, and PA samples generally showed higher diversity (Shannon, Simpson and Chao indices) than FL samples. At the class level, Opitutae was most abundant in the PA fraction of the sea sample, followed by Flavobacteria and Gammaproteobacteria, while the FL sea sample was dominated by Alphaproteobacteria. Finally, the coast and river samples, both PA and FL fractions, were dominated by Betaproteobacteria, Alphaproteobacteria and Actinobacteria. These results highlight the coexistence of particle specialists and generalists and the role of particle quality in structuring bacterial communities in the area. These results may also serve as a~basis to predict further changes in bacterial communities should climate change lead to further increases in river discharge and related particles load.

scholarly journals Spatial variability of particle-attached and free-living bacterial diversity in surface waters from the Mackenzie River to the Beaufort Sea (Canadian Arctic)

2013 ◽  
Vol 10 (4) ◽  
pp. 2747-2759 ◽  
Author(s):  
E. Ortega-Retuerta ◽  
F. Joux ◽  
W. H. Jeffrey ◽  
J. F. Ghiglione
Keyword(s):  
Community Structure ◽  
Bacterial Community ◽  
16S Rrna ◽  
Surface Waters ◽  
Bacterial Communities ◽  
Bacterial Community Structure ◽  
Canadian Arctic ◽  
Beaufort Sea ◽  
Free Living ◽  
Open Sea

Abstract. We explored the patterns of total and active bacterial community structure in a gradient covering surface waters from the Mackenzie River to the coastal Beaufort Sea in the Canadian Arctic Ocean, with a particular focus on free-living (FL) vs. particle-attached (PA) communities. Capillary electrophoresis–single-strand conformation polymorphism (CE-SSCP) showed significant differences when comparing river, coast and open sea bacterial community structures. In contrast to the river and coastal waters, total (16S rDNA-based) and active (16S rRNA-based) communities in the open sea samples were not significantly different, suggesting that most present bacterial groups were equally active in this area. Additionally, we observed significant differences between PA and FL bacterial community structure in the open sea, but similar structure in the two fractions for coastal and river samples. Direct multivariate statistical analyses showed that total community structure was mainly driven by salinity (a proxy of dissolved organic carbon and chromophoric dissolved organic matter), suspended particles, amino acids and chlorophyll a. Pyrosequencing of 16S rRNA genes from selected samples confirmed significant differences between river, coastal and sea samples. The PA fraction was only different (15.7% similarity) from the FL one in the open sea sample. Furthermore, PA samples generally showed higher diversity (Shannon, Simpson and Chao indices) than FL samples. At the class level, Opitutae was most abundant in the PA fraction of the sea sample, followed by Flavobacteria and Gammaproteobacteria, while the FL sea sample was dominated by Alphaproteobacteria. Finally, for the coast and river samples and both PA and FL fractions, Betaproteobacteria, Alphaproteobacteria and Actinobacteria were dominant. These results highlight the coexistence of particle specialists and generalists and the role of particle quality in structuring bacterial communities in the area. These results may also serve as a basis to predict further changes in bacterial communities should climate change lead to further increases in river discharge and related particle loads.

scholarly journals Diversity Distribution, Driving Factors and Assembly Mechanisms of Free-Living and Particle-Associated Bacterial Communities at a Subtropical Marginal Sea

2021 ◽  
Vol 9 (12) ◽  
pp. 2445
Author(s):  
Huatao Yuan ◽  
Tangcheng Li ◽  
Hongfei Li ◽  
Cong Wang ◽  
Ling Li ◽  
...  
Keyword(s):  
Bacterial Communities ◽  
Dispersal Limitation ◽  
Distribution Patterns ◽  
Amplicon Sequencing ◽  
Driving Factors ◽  
Rrna Gene ◽  
Key Factors ◽  
Free Living ◽  
Specific Distribution ◽  
Marginal Sea

Free-living (FL) and particle-associated (PA) bacterioplankton communities play critical roles in biogeochemical cycles in the ocean. However, their community composition, assembly process and functions in the continental shelf and slope regions are poorly understood. Based on 16S rRNA gene amplicon sequencing, we investigated bacterial communities’ driving factors, assembly processes and functional potentials at a subtropical marginal sea. The bacterioplankton community showed specific distribution patterns with respect to lifestyle (free living vs. particle associated), habitat (slope vs. shelf) and depth (surface vs. DCM and Bottom). Salinity and water temperature were the key factors modulating turnover in the FL community, whereas nitrite, silicate and phosphate were the key factors for the PA community. Model analyses revealed that stochastic processes outweighed deterministic processes and had stronger influences on PA than FL. Homogeneous selection (Hos) was more responsible for the assembly and turnover of FL, while drift and dispersal limitation contributed more to the assembly of PA. Importantly, the primary contributor to Hos in PA was Gammaproteobacteria:Others, whereas that in FL was Cyanobacteria:Bin6. Finally, the PICRUSt2 analysis indicated that the potential metabolisms of carbohydrates, cofactors, amino acids, terpenoids, polyketides, lipids and antibiotic resistance were markedly enriched in PA than FL.

scholarly journals Local-scale determinants of arboreal spider beta diversity in a temperate forest: roles of tree architecture, spatial distance, and dispersal capacity

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5596 ◽  
Author(s):  
Qiongdao Zhang ◽  
Dong He ◽  
Hua Wu ◽  
Wei Shi ◽  
Cong Chen
Keyword(s):  
Beta Diversity ◽  
Environmental Gradient ◽  
Dispersal Limitation ◽  
Local Scale ◽  
Tree Architecture ◽  
Habitat Specialization ◽  
Spatial Distance ◽  
Species Variation ◽  
Dispersal Capacity ◽  
Canopy Volume

Spiders are a functionally important taxon in forest ecosystems, but the determinants of arboreal spider beta diversity are poorly understood at the local scale. We examined spider assemblages in 324 European beech (Fagus sylvatica) trees of varying sizes across three forest stands in Würzburg (Germany) to disentangle the roles of tree architecture, spatial distance, and dispersal capacity on spider turnover across individual trees. A large proportion of tree pairs (66%) showed higher compositional dissimilarity in spider assemblages than expected by chance, suggesting prominent roles of habitat specialization and/or dispersal limitation. Trees with higher dissimilarity in DBH and canopy volume, and to a lesser extent in foliage cover, supported more dissimilar spider assemblages, suggesting that tree architecture comprised a relevant environmental gradient of sorting spider species. Variation partitioning revealed that 28.4% of the variation in beta diversity was jointly explained by tree architecture, spatial distance (measured by principal coordinates of neighbor matrices) and dispersal capacity (quantified by ballooning propensity). Among these, dispersal capacity accounted for a comparable proportion as spatial distance did (6.8% vs. 5.9%). Beta diversity did not significantly differ between high- and low-vagility groups, but beta diversity in species with high vagility was more strongly determined by spatially structured environmental variation. Altogether, both niche specialization, along the environmental gradient defined by tree architecture, and dispersal limitation are responsible for structuring arboreal spider assemblages. High dispersal capacity of spiders appears to reinforce the role of niche-related processes.

scholarly journals Imprint of a dissolved cobalt basaltic source on the Kerguelen Plateau

2012 ◽  
Vol 9 (12) ◽  
pp. 5279-5290 ◽  
Author(s):  
J. Bown ◽  
M. Boye ◽  
P. Laan ◽  
A. R. Bowie ◽  
Y.-H. Park ◽  
...  
Keyword(s):  
Surface Waters ◽  
External Input ◽  
Eastern Slope ◽  
Kerguelen Plateau ◽  
Dissolved Iron ◽  
Deep Waters ◽  
Iron Supply ◽  
Natural Iron ◽  
Shelf Sediments ◽  
Lateral Advection

Abstract. Processes of cobalt (Co) entrainment from shelf sediments over the Kerguelen Plateau were studied during the KEOPS (Kerguelen Ocean Plateau compared Study) in order to explain the exceptionally high dissolved cobalt concentrations that have been measured in the surface waters above the Kerguelen Plateau, and in intermediate and deep waters above its eastern slope. Lateral advection and dissolution of Co contained in basalt sediments around Heard Island, a main source of lithogenic Co in the study area, were shown to imprint the process of surface enrichment over the plateau. Dissolved Co enrichment was strongest at the intercept of the eastern slope with intermediate and deep waters, probably due to more efficient mobilisation of the sediments in the slope current, in addition to advection of Co-enriched and low-oxygenated ocean water masses. In surface waters, the strong sedimentary Co inputs were estimated to be much higher than biological Co uptake in phytoplankton blooms, underlining the potential use of dissolved cobalt as tracer of the natural iron fertilization above the Kerguelen Plateau. Based on a simple steady-state balance equation of the external input of dissolved iron over the plateau, the fertilization of iron inferred by using dissolved Co as a tracer of basalt sources is estimated to be 28 × 102 ± 21 × 102 t yr−1 in surface waters of the Kerguelen Plateau. This estimate is consistent with preceding ones (Zhang et al., 2008; Chever et al., 2010), and the calculated iron supply matches with the phytoplankton demand (Sarthou et al., 2008).

Nutrients, Chlorophyll, and Internal Tides in the St. Lawrence Estuary

1976 ◽  
Vol 33 (12) ◽  
pp. 2747-2757 ◽  
Author(s):  
Jean-Claude Therriault ◽  
Guy Lacroix
Keyword(s):  
Surface Waters ◽  
Internal Tides ◽  
Upstream Region ◽  
Mixing Process ◽  
Low Oxygen ◽  
Lawrence Estuary ◽  
Deep Waters ◽  
High Nutrient ◽  
Phosphate Nitrate ◽  
St Lawrence Estuary

Tide-dependent variations of temperature, salinity, dissolved oxygen, phosphate, nitrate, and chlorophyll a support the existence of internal tides (longitudinal and transversal) in the St. Lawrence estuary. Vertical oscillations of the poorly oxygenated and nutrient-rich intermediate and deep waters of the estuary have been documented at the head of the Laurentian Channel, the region in which the internal tides are thought to be generated. Penetration of intermediate waters (high-nutrient and low-oxygen concentrations) beyond the Laurentian Channel associated with the internal tides and linked with an intense mixing process in the upstream region permits the nutrient enrichment of the surface waters and their eventual advection in the seaward direction.

scholarly journals Sources and mechanisms of seawater freshening at the Tsivol’ki and Sedov’ bays (Novaya Zemlya): isotope (δD, δ18О) data

2019 ◽  
Vol 59 (6) ◽  
pp. 928-938
Author(s):  
E. O. Dubinina ◽  
S. A. Kossova ◽  
A. Yu. Miroshnikov
Keyword(s):  
Surface Waters ◽  
Water Exchange ◽  
Free Water ◽  
Kara Sea ◽  
River Waters ◽  
Fresh Waters ◽  
Novaya Zemlya ◽  
Deep Waters ◽  
Continental Runoff ◽  
The Difference

Three-year monitoring of isotope (D, 18О) parameters in the waters of the Sedov and Tsivolki bays (Novaya Zemlya) was carried out. The fresh waters of the bays are originated from several sources (continental runoff, precipitations, and waters going from the archipelago). The freshening extent and sources of fresh waters are different at the different depth. The D and 18О values varies only in the surface waters which contains more than 30% of fresh component. In 2015 the surface waters of Sedov bay were represented by Ob river waters, and the surface waters of Tsivolki bay were enriched by the runoff from Novaya Zemlya. Deep waters in both bays show signs of desalination by high latitude atmospheric precipitations. These waters can be transferred to the southeast coast of Novaya Zemlya through the trenches of St. Anne and Voronin. The difference in the freshening mechanisms of the waters of Sedov and Tsivolka bays is determined by different bottom morphologies and different degrees of free water exchange with the Kara Sea.

scholarly journals Ecological networks reveal contrasting patterns of bacterial and fungal communities in glacier-fed streams in Central Asia

2019 ◽  
Author(s):  
Ze Ren ◽  
Hongkai Gao
Keyword(s):  
Bacterial Community ◽  
Microbial Communities ◽  
Central Asia ◽  
Fungal Community ◽  
Bacterial Communities ◽  
Beta Diversity ◽  
Hydrological Modeling ◽  
Alpha Diversity ◽  
Environmental Variation ◽  
Fungal Communities

Bacterial and fungal communities in biofilms are important components in driving biogeochemical processes in stream ecosystems. Previous studies have well documented the patterns of bacterial alpha diversity in stream biofilms in glacier-fed streams, where, however, beta diversity of the microbial communities has received much less attention especially considering both bacterial and fungal communities. A focus on beta diversity can provide insights into the mechanisms driving community changes associated to large environmental fluctuations and disturbances, such as in glacier-fed streams. Moreover, modularity of co-occurrence networks can reveal more ecological and evolutionary properties of microbial communities beyond taxonomic groups. Here, integrating beta diversity and co-occurrence approach, we explored the network topology and modularity of the bacterial and fungal communities with consideration of environmental variation in glacier-fed streams in Central Asia. Combining results from hydrological modeling and normalized difference of vegetation index, this study highlighted that hydrological variables and vegetation status are major variables determining the environmental heterogeneity of glacier-fed streams. Bacterial communities formed a more complex and connected network, while the fungal communities formed a more clustered network. Moreover, the strong interrelations among the taxonomic dissimilarities of bacterial community and modules suggest they had common processes in driving diversity and taxonomic compositions across the heterogeneous environment. In contrast, fungal community and modules generally showed distinct driving processes to each other. Moreover, bacterial and fungal communities also had different driving processes. Furthermore, the variation of bacterial community and modules were strongly correlated with hydrological properties and vegetation status but not with nutrients, while fungal community and modules (except one module) were not associated with environmental variation. Our results suggest that bacterial and fungal communities had distinct mechanisms in structuring microbial networks, and environmental variation had strong influences on bacterial communities but not on fungal communities. The fungal communities have unique assembly mechanisms and physiological properties which might lead to their insensitive responses to environmental variations compared to bacterial communities. Overall, beyond alpha diversity in previous studies, these results add our knowledge that bacterial and fungal communities have contrasting assembly mechanisms and respond differently to environmental variation in glacier-fed streams.

scholarly journals Ecological networks reveal contrasting patterns of bacterial and fungal communities in glacier-fed streams in Central Asia

2019 ◽  
Author(s):  
Ze Ren ◽  
Hongkai Gao
Keyword(s):  
Bacterial Community ◽  
Microbial Communities ◽  
Central Asia ◽  
Fungal Community ◽  
Bacterial Communities ◽  
Beta Diversity ◽  
Hydrological Modeling ◽  
Alpha Diversity ◽  
Environmental Variation ◽  
Fungal Communities

Bacterial and fungal communities in biofilms are important components in driving biogeochemical processes in stream ecosystems. Previous studies have well documented the patterns of bacterial alpha diversity in stream biofilms in glacier-fed streams, where, however, beta diversity of the microbial communities has received much less attention especially considering both bacterial and fungal communities. A focus on beta diversity can provide insights into the mechanisms driving community changes associated to large environmental fluctuations and disturbances, such as in glacier-fed streams. Moreover, modularity of co-occurrence networks can reveal more ecological and evolutionary properties of microbial communities beyond taxonomic groups. Here, integrating beta diversity and co-occurrence approach, we explored the network topology and modularity of the bacterial and fungal communities with consideration of environmental variation in glacier-fed streams in Central Asia. Combining results from hydrological modeling and normalized difference of vegetation index, this study highlighted that hydrological variables and vegetation status are major variables determining the environmental heterogeneity of glacier-fed streams. Bacterial communities formed a more complex and connected network, while the fungal communities formed a more clustered network. Moreover, the strong interrelations among the taxonomic dissimilarities of bacterial community and modules suggest they had common processes in driving diversity and taxonomic compositions across the heterogeneous environment. In contrast, fungal community and modules generally showed distinct driving processes to each other. Moreover, bacterial and fungal communities also had different driving processes. Furthermore, the variation of bacterial community and modules were strongly correlated with hydrological properties and vegetation status but not with nutrients, while fungal community and modules (except one module) were not associated with environmental variation. Our results suggest that bacterial and fungal communities had distinct mechanisms in structuring microbial networks, and environmental variation had strong influences on bacterial communities but not on fungal communities. The fungal communities have unique assembly mechanisms and physiological properties which might lead to their insensitive responses to environmental variations compared to bacterial communities. Overall, beyond alpha diversity in previous studies, these results add our knowledge that bacterial and fungal communities have contrasting assembly mechanisms and respond differently to environmental variation in glacier-fed streams.

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