scholarly journals Loss of cone cyclic nucleotide-gated channel leads to alterations in light response modulating system and cellular stress response pathways: a gene expression profiling study

2013 ◽  
Vol 22 (19) ◽  
pp. 3906-3919 ◽  
Author(s):  
Hongwei Ma ◽  
Arjun Thapa ◽  
Lynsie M. Morris ◽  
Stylianos Michalakis ◽  
Martin Biel ◽  
...  
2005 ◽  
Vol 52 (3,4) ◽  
pp. 137-144 ◽  
Author(s):  
Kazuhito Rokutan ◽  
Kyoko Morita ◽  
Kiyoshi Masuda ◽  
Kumiko Tominaga ◽  
Michiyo Shikishima ◽  
...  

2003 ◽  
Vol 278 (32) ◽  
pp. 30328-30338 ◽  
Author(s):  
L. Ashley Cowart ◽  
Yasuo Okamoto ◽  
Francisco R. Pinto ◽  
Jason L. Gandy ◽  
Jonas S. Almeida ◽  
...  

2011 ◽  
Vol 12 (1) ◽  
pp. 27 ◽  
Author(s):  
Anna Fiszer-Kierzkowska ◽  
Natalia Vydra ◽  
Aleksandra Wysocka-Wycisk ◽  
Zuzana Kronekova ◽  
Michał Jarząb ◽  
...  

2011 ◽  
Vol 300 (6) ◽  
pp. R1373-R1383 ◽  
Author(s):  
Cheryl A. Logan ◽  
George N. Somero

The capacities of eurythermal ectotherms to withstand wide ranges of temperature are based, in part, on abilities to modulate gene expression as body temperature changes, notably genes encoding proteins of the cellular stress response. Here, using a complementary DNA microarray, we investigated the sequence in which cellular stress response-linked genes are expressed during acute heat stress, to elucidate how severity of stress affects the categories of genes changing expression. We also studied how prior acclimation history affected gene expression in response to acute heat stress. Eurythermal goby fish ( Gillichthys mirabilis ) were acclimated to 9 ± 0.5, 19 ± 0.5, and 28 ± 0.5°C for 1 mo. Then fish were given an acute heat ramp (4°C/h), and gill tissues were sampled every +4°C to monitor gene expression. The average onset temperature for a significant change in expression during acute stress increased by ∼2°C for each ∼10°C increase in acclimation temperature. For some genes, warm acclimation appeared to obviate the need for expression change until the most extreme temperatures were reached. Sequential expression of different categories of genes reflected severity of stress. Regardless of acclimation temperature, the gene encoding heat shock protein 70 ( HSP70) was upregulated strongly during mild stress; the gene encoding the proteolytic protein ubiquitin ( UBIQ) was upregulated at slightly higher temperatures; and a gene encoding a protein involved in cell cycle arrest and apoptosis, cyclin-dependent kinase inhibitor 1B ( CDKN1B), was upregulated only under extreme stress. The tiered, stress level-related expression patterns and the effects of acclimation on induction temperature yield new insights into the fundamental mechanisms of eurythermy.


PLoS ONE ◽  
2017 ◽  
Vol 12 (1) ◽  
pp. e0171247 ◽  
Author(s):  
Andrzej Kochanowicz ◽  
Stanisław Sawczyn ◽  
Bartłomiej Niespodziński ◽  
Jan Mieszkowski ◽  
Kazimierz Kochanowicz ◽  
...  

BMC Genomics ◽  
2013 ◽  
Vol 14 (1) ◽  
pp. 583 ◽  
Author(s):  
Mahmood Chamankhah ◽  
Eftekhar Eftekharpour ◽  
Soheila Karimi-Abdolrezaee ◽  
Paul C Boutros ◽  
Serban San-Marina ◽  
...  

2020 ◽  
Vol 21 (15) ◽  
pp. 5305
Author(s):  
Martina Wahlund ◽  
Indranil Sinha ◽  
Kristina Broliden ◽  
Shanie Saghafian-Hedengren ◽  
Anna Nilsson ◽  
...  

Infection is a common and serious complication of cancer treatment in children that often presents as febrile neutropenia (FN). Gene-expression profiling techniques can reveal transcriptional signatures that discriminate between viral, bacterial and asymptomatic infections in otherwise healthy children. Here, we examined whether gene-expression profiling was feasible in children with FN who were undergoing cancer treatment. The blood transcriptome of the children (n = 63) was investigated at time of FN diagnosed as viral, bacterial, co-infection or unknown etiology, respectively, and compared to control samples derived from 12 of the patients following the FN episode. RNA sequencing was successful in 43 (68%) of the FN episodes. Only two genes were significantly differentially expressed in the bacterial versus the control group. Significantly up-regulated genes in patients with the other three etiologies versus the control group were enriched with cellular processes related to proliferation and cellular stress response, with no clear enrichment with innate responses to pathogens. Among the significantly down-regulated genes, a few clustered into pathways connected to responses to infection. In the present study of children during cancer treatment, the blood transcriptome was not suitable for determining the etiology of FN because of too few circulating immune cells for reliable gene expression analysis.


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