P–171 Automated oocyte and zygote denudation using a novel microfluidic device supervised by a computer vision algorithm

2021 ◽  
Vol 36 (Supplement_1) ◽  
Author(s):  
J Guerrer. Sánchez ◽  
Y Cabello ◽  
G Fernánde. Blanco ◽  
J Fidalgo ◽  
I Hernánde. Montilla ◽  
...  

Abstract Study question Is it possible to remove cumulus cells using a 16-well microfluidic device with automated flows to facilitate vitrification, ICSI, NI-PGT or non-invasive metabolomics analysis? Summary answer The designed automated system and protocol efficiently denude 16 samples simultaneously with a x10 lower shear stress than the manual process and without human intervention. What is known already Most processes involved in IVF such as insemination, washing, denudation, embryo culture and selection are still manually performed, labor-intensive and require highly skilled professionals. This leads to a significant variability in the clinical outcomes achieved by different embryologists and labs. The automation of these processes is a promising approach to reduce costs and improve the accessibility to assisted reproductive therapies. Although a simple procedure, standardization of cumulus oocyte complex (COCs) and zygotes denudation is key to facilitate ICSI, vitrification and to avoid DNA contamination for NI-embryo testing (PGT or metabolomics), while avoiding damage to the oocyte by excessive shear stress. Study design, size, duration A total of 160 cow COCs were used due to their size similarity with human COCs. Half were denuded 16–20 hours post-insemination and half pre-insemination for 5–10 minutes. COCs were classified as partially denuded if fertilization assessment, ICSI or vitrification was possible, and completely denuded if no cumulus cells remained. COCs controls were manually denuded (Stripper® capillary 145μm ID) to compare shear stress between procedures. This study was conducted during 2020 – 2021. Participants/materials, setting, methods We developed a customized microfluidic biochip that exerts a particular fluid motion while avoiding egg entrapment within microfluidic channels. The denudation efficacy was established by subjectively scoring images of bovine oocytes after generating a continuous “Push & Pull” fluid motion inside the biochip wells. A Computer Vision model was developed in parallel in order to optically assess denudation completion. The model used was a Pytorch implementation of Faster-RCNN with ImageNet pretrained weights Main results and the role of chance 96 bovine COCs were microfuidically handled post insemination achieving complete (56/96) or partial (40/96) removal of the cumulus cells on day 1, while for day 3 double denudation group, 89/96 (92.7%) were completely denuded while the rest remained partially denuded. In comparison, 80/80 (100%) of manually denuded cow COCs, achieved complete denudation (50% post-insemination group and 50% pre-insemination group). In addition, 48/64 (75%) cow COCs treated pre-insemination were partially denuded, enough to carry out ICSI after 5–10 min of treatment. The results here obtained indicate that media needs to flow through the device at a rate that can generate enough shear to strip off the cumulus-corona cells while avoiding emptying of the reservoirs containing the fertilization or culture medium. The shear stress of our design was calculated to be smaller than 4.4 Pa, about ten times lower than the one applied by the manual process (∼44Pa). The deep learning algorithm was tested on 20 unseen human oocytes on day 1, with 10 true positives 9 true negatives, and 1 false negative (95% accuracy). Limitations, reasons for caution The success of the denudation procedure was dependent on the design of the biochip wells and the microfluidic protocol used. The accuracy of our findings is still limited because of the difficulty in manufacturing prototype biochips. Wider implications of the findings: Complete denudation is key to avoid DNA contamination for NI-PGT or metabolomics analysis, while avoiding damage to the oocyte by excessive shear stress. Our device, which has the potential of scaling up and treat each oocyte individually, can improve automation and increase efficiency of current ART procedures Trial registration number NA

Author(s):  
Fei Liu ◽  
Tingting Chen ◽  
Xudong Zhang ◽  
Fang Li ◽  
Ioana Voiculescu

Measuring water toxicity is a lengthy process, and rapid analytical methods are limited. A complementary approach is to measure water toxicity on live cells via electric cell-substrate impedance sensing (ECIS) using a field portable device. This paper presents a study of the longevity of bovine aortic endothelial cell (BAECs VEC Technologies, Rensselaer, NY) by integrating a microfluidic device onto the ECIS sensors. This microfluidic chamber with a network of tree-like perfusion microfluidic channels for cell media delivery to the culturing chamber was fabricated from a biocompatible polymer and tested for longevity studies. This perfusion microchannels were designed as a symmetric arbor with binary splitting to provide equal flow in all the perfusion channels. The microdimensions of the perfusion channels provide high flow resistance, thus carrying low flow rates for a given head pressure and generating low shear stress to the cells during the long-time cell attachment and proliferation period. With such a microfluidic device, cell media can be automatically and evenly perfused into the culturing chamber and no significant shear stress produced by media perfusion was observed. During the longevity study, the BAECs were able to survive in good health for longer than one month. Toxicity tests to study the BAECs responsiveness to health-threatening concentrations of ammonia using the microfluidic ECIS sensor will be also presented. Using impedance spectroscopy technique we demonstrated the BAECs can rapidly respond to ammonia concentrations between the military exposure guideline of 2mM and human lethal concentration of 55mM. The BAECs monolayer represent the most important component of a biosensor for testing water toxicity in the field. This research concluded that the BAECs could resist at least 34 days on the microfluidic chip and demonstrate high values of cell membrane impedance during long period of time.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Semra Zuhal Birol ◽  
Rana Fucucuoglu ◽  
Sertac Cadirci ◽  
Ayca Sayi-Yazgan ◽  
Levent Trabzon

AbstractAtherosclerosis is a long-term disease process of the vascular system that is characterized by the formation of atherosclerotic plaques, which are inflammatory regions on medium and large-sized arteries. There are many factors contributing to plaque formation, such as changes in shear stress levels, rupture of endothelial cells, accumulation of lipids, and recruitment of leukocytes. Shear stress is one of the main factors that regulates the homeostasis of the circulatory system; therefore, sudden and chronic changes in shear stress may cause severe pathological conditions. In this study, microfluidic channels with cavitations were designed to mimic the shape of the atherosclerotic blood vessel, where the shear stress and pressure difference depend on design of the microchannels. Changes in the inflammatory-related molecules ICAM-1 and IL-8 were investigated in THP-1 cells in response to applied shear stresses in an continuous cycling system through microfluidic channels with periodic cavitations. ICAM-1 mRNA expression and IL-8 release were analyzed by qRT-PCR and ELISA, respectively. Additionally, the adhesion behavior of sheared THP-1 cells to endothelial cells was examined by fluorescence microscopy. The results showed that 15 Pa shear stress significantly increases expression of ICAM-1 gene and IL-8 release in THP-1 cells, whereas it decreases the adhesion between THP-1 cells and endothelial cells.


2002 ◽  
Vol 741 ◽  
Author(s):  
Francesco Cattaneo ◽  
Peter Mach ◽  
Jennifer Hsieh ◽  
Tom Krupenkin ◽  
Shu Yang ◽  
...  

ABSTRACTThis paper reviews some of our recent work on a new class of photonic component that uses electrowetting pumps and microfluidic channels for dynamic tuning of the characteristics of optical waveguides. These pumps exploit the ability to alter the contact angle of conductive liquids situated on top of a dielectric layer with appropriately patterned underlying electrodes. By applying different voltages to opposite sides of a conductive fluid plug, the contact angle imbalance created between the ends of the liquid drives fluid motion toward the higher field regions [1]. In our design, this electrically controlled, fully reversible motion of fluids contained within recirculating channels is used to alter the effective indices of waveguide modes of three different types of optical fiber structures: fiber Bragg and long period gratings and etched or tapered fiber. Our systems operate non-mechanically and have excellent optical performance, including low insertion and polarization-dependent losses. These characteristics suggest a promising potential for electrowetting-based microfluidic tuning of optical fiber devices and other photonic components.


Author(s):  
Matthew L. Dering ◽  
Conrad S. Tucker

The authors of this work present a computer vision approach that discovers and classifies objects in a video stream, towards an automated system for managing End of Life (EOL) waste streams. Currently, the sorting stage of EOL waste management is an extremely manual and tedious process that increases the costs of EOL options and minimizes its attractiveness as a profitable enterprise solution. There have been a wide range of EOL methodologies proposed in the engineering design community that focus on determining the optimal EOL strategies of reuse, recycle, remanufacturing and resynthesis. However, many of these methodologies assume a product/component disassembly cost based on human labor, which hereby increases the cost of EOL waste management. For example, recent EOL options such as resynthesis, rely heavily on the optimal sorting and combining of components in a novel way to form new products. This process however, requires considerable manual labor that may make this option less attractive, given products with highly complex interactions and components. To mitigate these challenges, the authors propose a computer vision system that takes live video streams of incoming EOL waste and i) automatically identifies and classifies products/components of interest and ii) predicts the EOL process that will be needed for a given product/component that is classified. A case study involving an EOL waste stream video is used to demonstrate the predictive accuracy of the proposed methodology in identifying and classifying EOL objects.


1976 ◽  
Vol 24 (1) ◽  
pp. 2-5 ◽  
Author(s):  
C J Herman ◽  
B Bunnag

The immediate goal of the Cytology Automation Program of the National Cancer Institute is the development of an automated system which will screen appropriate specimens from asymptomatic women for squamous cell carcinoma of the cervix and its precursor lesions, dysplasia and carcinoma in situ. This system should make one of three decisions on each specimen: normal, abnormal or inadequate with an acceptably low false negative rate. It is expected that the next step in evaluation of patients whose specimens have been identified as abnormal by the automated system would be a manual evaluation of a traditional cytologic specimen.


Author(s):  
P. K. Rajesh ◽  
P. Ponnambalam ◽  
N. Ramakrishnan ◽  
K. Prakasan

Recently there is an increased interest in the design of microfluidic devices for research in biotechnological studies, applied to sample detection and analysis of species. When fluids are confined to small volumes, mixing results almost entirely by diffusion due to low velocities of flow in microchannels. As a result, it is possible to design microfluidic systems in which dissimilar fluids flow along side each other over long distances without significant mixing. The H-filter is a microfluidic device used for the extraction of molecular analytes from liquids containing interfering particles. The principle behind H filter is that small molecules will diffuse quickly from a sample stream to the buffer stream while very large molecules and particles will remain indefinitely in the sample stream because of their much larger size and much decreased diffusion rate. Because the Reynolds number in most microfluidic channels is generally kept well below 1, no turbulent mixing of fluids occurs. The only means by which solvents, solutes and suspended particles move in a direction transverse to the direction of flow is by diffusion. Differences in diffusion coefficients can be used to separate molecules of large particles over time. The time spent in flowing in a channel is proportional to the length of the channel. Before carrying out experiments, it is worthwhile to simulate the diffusion process in a microfluidic device for various properties of species and channel geometry. This paper attempts to model the diffusion process in an H-filter for typical species using CFD-ACE+, a software for solving problems in fluid dynamics with multi-physics capabilities. A module of CFD ACE+, called user-scalar that allows the user to define scalar quantities and boundary conditions for this scalar is used in the simulation. As seen from the studies, the diffusivities of species A and B in the buffer influence their diffusion. Optimization of geometry for a given species can be done with this method and separation can be achieved. The results from such a study will be useful for the design optimization and fabrication of such devices.


Lab on a Chip ◽  
2019 ◽  
Vol 19 (4) ◽  
pp. 574-579 ◽  
Author(s):  
M. Adiraj Iyer ◽  
D. T. Eddington

Polydimethylsiloxane (PDMS) is known to absorb small hydrophobic molecules. We propose to leverage this material to store and release small hydrophobic molecules into and from the PDMS matrix. This method could be used to deliver small hydrophobic molecules to microfluidic channels from the walls of a microfluidic device.


Lab on a Chip ◽  
2019 ◽  
Vol 19 (24) ◽  
pp. 4064-4070 ◽  
Author(s):  
Haiwei Lu ◽  
Kirk Mutafopulos ◽  
John A. Heyman ◽  
Pascal Spink ◽  
Liang Shen ◽  
...  

We introduce a microfluidic device that uses traveling surface acoustic waves to lyse bacteria with high efficiency. This lysis method should be applicable to a wide range of bacteria species and can be modified to analyze individual bacteria cells.


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