scholarly journals Persistence of a Geographically-Stable Hybrid Zone in Puerto Rican Dwarf Geckos

2019 ◽  
Vol 110 (5) ◽  
pp. 523-534 ◽  
Author(s):  
Brendan J Pinto ◽  
James Titus-McQuillan ◽  
Juan D Daza ◽  
Tony Gamble
Keyword(s):  
Reproductive Isolation ◽  
Hybrid Zone ◽  
Sequence Data ◽  
Strong Support ◽  
Climatic Variables ◽  
Putative Hybrid ◽  
Hybrid Zones ◽  
Intermediate Phenotypes ◽  
Genetic Mechanisms ◽  
Stable Hybrid

Abstract Determining the mechanisms that create and maintain biodiversity is a central question in ecology and evolution. Speciation is the process that creates biodiversity. Speciation is mediated by incompatibilities that lead to reproductive isolation between divergent populations and these incompatibilities can be observed in hybrid zones. Gecko lizards are a speciose clade possessing an impressive diversity of behavioral and morphological traits. In geckos, however, our understanding of the speciation process is negligible. To address this gap, we used genetic sequence data (both mitochondrial and nuclear markers) to revisit a putative hybrid zone between Sphaerodactylus nicholsi and Sphaerodactylus townsendi in Puerto Rico, initially described in 1984. First, we addressed discrepancies in the literature on the validity of both species. Second, we sampled a 10-km-wide transect across the putative hybrid zone and tested explicit predictions about its dynamics using cline models. Third, we investigated potential causes for the hybrid zone using species distribution modeling and simulations; namely, whether unique climatic variables within the hybrid zone might elicit selection for intermediate phenotypes. We find strong support for the species-level status of each species and no evidence of movement, or unique climatic variables near the hybrid zone. We suggest that this narrow hybrid zone is geographically stable and is maintained by a combination of dispersal and selection. Thus, this work has identified an extant model system within geckos that that can be used for future investigations detailing genetic mechanisms of reproductive isolation in an understudied vertebrate group.

scholarly journals A maladaptive combination of traits contributes to the maintenance of a stable hybrid zone between two divergent species of Drosophila

2017 ◽  
Author(s):  
Brandon S. Cooper ◽  
Alisa Sedghifar ◽  
W. Thurston Nash ◽  
Aaron A. Comeault ◽  
Daniel R. Matute
Keyword(s):  
Gene Flow ◽  
Hybrid Zone ◽  
Hybrid Zones ◽  
Hybrid Male ◽  
Open Habitat ◽  
Preferred Habitat ◽  
Species Overlap ◽  
Agricultural Areas ◽  
Stable Hybrid ◽  
Advanced Generation

ABSTRACTGeographical areas where two species come into contact and hybridize serve as natural laboratories for assessing mechanisms that limit gene flow between species. The ranges of about half of all closely related Drosophila species overlap, and the genomes of several pairs reveal signatures of past introgression. However, only two contemporary hybrid zones have been characterized in the genus, and both are recently diverged sister species (D. simulans-D. sechellia, Ks = 0.05; D. yakuba-D. santomea, Ks = 0.048). Here we present evidence of a new hybrid zone, and the ecological mechanisms that maintain it, between two highly divergent Drosophila species (Ks = 0.11). On the island of Bioko in west Africa, D. teissieri occupies mostly forests, D. yakuba occupies mostly open agricultural areas, and recently, we discovered that hybrids between these species occur near the interface of these habitats. Genome sequencing revealed that all field-sampled hybrids are F1 progeny of D. yakuba females and D. teissieri males. We found no evidence for either advanced-generation hybrids or F1 hybrids produced by D. teissieri females and D.yakuba males. The lack of advanced-generation hybrids on Bioko is consistent with mark-recapture and laboratory experiments that we conducted, which indicate hybrids have a maladaptive combination of traits. Like D. yakuba, hybrids behaviorally prefer open habitat that is relatively warm and dry, but like D. teissieri, hybrids have low desiccation tolerance, which we predict leaves them physiologically ill-equipped to cope with their preferred habitat. These observations are consistent with recent findings of limited introgression in the D. yakuba clade and identify an ecological mechanism for limiting gene flow between D. yakuba and D. teissieri; namely, selection against hybrids that we have documented, in combination with hybrid male sterility, contributes to the maintenance of this narrow (~30m), stable hybrid zone centered on the forest-open habitat ecotone. Our results show how a deleterious combination of parental traits can result in unfit or maladapted hybrids.

Isolating Mechanisms in Threespine Sticklebacks (Gasterosteus)

1967 ◽  
Vol 24 (8) ◽  
pp. 1637-1692 ◽  
Author(s):  
D. W. Hagen
Keyword(s):  
Reproductive Isolation ◽  
Hybrid Zone ◽  
Genetic Divergence ◽  
Progressive Increase ◽  
Hybrid Zones ◽  
Genetic Incompatibility ◽  
Species Definition ◽  
Isolating Mechanisms ◽  
Ecological Isolation ◽  
Threespine Sticklebacks

A systematic examination was made of isolating mechanisms, as set out by Mayr, that might serve to maintain reproductive isolation between the marine (trachurus) and the freshwater (leiurus) threespine sticklebacks. Field work was conducted in a small British Columbia coastal stream, the Little Campbell River, for[Formula: see text] years and complemented with laboratory experiments. Other streams were included late in the investigation. Leiurus permanently occupies the upper reaches of the stream; trachurus is anadromous and enters the lower reaches to breed in freshwater. Between the breeding grounds of the two, where numbers of both are greatly reduced, hybridization occurs. But it is restricted to a narrow zone.The two species are easily distinguished. Thus, morphological analysis provided firm circumstantial evidence that hybrids are plentiful and that backcrossing occurs, predominately to leiurus. Hybridization was confirmed by rearing offspring under uniform conditions in the laboratory with crosses in all combinations. Such offspring were also used to demonstrate considerable genetic divergence (much of it polygenetic) between leiurus and trachurus.Behavioural experiments demonstrated the absence of ethological isolation and hybrids performed courtship and parental care normally.Nor was genetic incompatibility found in the reared hybrids (F1's or backcrosses); all were vigourous. Seasonal isolation is only partially developed with early spawning migrants of trachurus making a major contribution to hybridization (in the Little Campbell River).Since behavioural and genetic blocks to hybridization are not present, there is no means to prevent hybridization where leiurus and trachurus come together. However, coexistence between the two species is very low. Evidence from observation and experiment in the field and from preference tests showed that ecological isolation is a very powerful barrier to hybridization. The two species show numerous adaptations to the distinctly different habitats they frequent, and each shows a strong affinity for its own habitat. In localities with intermediate or contiguous habitats, coexistence and interbreeding occur. Hybridization is a function of the environment.No selection against hybrids could be detected within the hybrid zone (or with laboratory reared hybrids); yet, one is forced to assume that it is present outside the zone. The very narrow zones as well as the reversed cline that were found indicate there is intense selection against hybrids. What these selective forces are remains to be found. Hybrid zones will probably continue to be poorly understood until a critical analysis of hybrid inferiority is made.Genotypes of either species that remain in the hybrid zone are at a strong selective disadvantage. Hence, reinforcement of ecological isolation probably occurs, and Moore's criticism concerning the spread of such reinforced genotypes would not apply to such cases. Mayr distinguishes between pre- and postmating mechanisms stating that the mode of operation of natural selection will be different for the two. But in threespine sticklebacks one premating mechanism (ecological isolation) and one postmating mechanism (hybrid inferiority) cannot be distinguished. This is so because ecological isolation is the cause of hybrid inferiority.Leiurus and trachurus are reproductively isolated, have well developed isolating mechanisms, and exhibit considerable genetic divergence. The two, then, fulfill the species definition of Mayr. There is no evidence that introgression occurs. Indeed a reversed cline showing a progressive increase in morphological divergence between the two species as the hybrid zone is approached together with the narrow hybrid zone demonstrates that selection severely restricts gene flow. Collections and observations from other streams corroborate those from the study area. Reproductive isolation between leiurus and trachurus seems to be widespread, throughout their range.

scholarly journals Genome-wide mapping in a house mouse hybrid zone reveals hybrid sterility loci and Dobzhansky-Muller interactions

eLife ◽  
2014 ◽  
Vol 3 ◽  
Author(s):  
Leslie M Turner ◽  
Bettina Harr
Keyword(s):  
House Mouse ◽  
Hybrid Zone ◽  
Hybrid Sterility ◽  
Testis Weight ◽  
Hybrid Zones ◽  
Incipient Species ◽  
Complex Interactions ◽  
Genetic Mechanisms ◽  
Resolution Mapping ◽  
Genomic Regions

Mapping hybrid defects in contact zones between incipient species can identify genomic regions contributing to reproductive isolation and reveal genetic mechanisms of speciation. The house mouse features a rare combination of sophisticated genetic tools and natural hybrid zones between subspecies. Male hybrids often show reduced fertility, a common reproductive barrier between incipient species. Laboratory crosses have identified sterility loci, but each encompasses hundreds of genes. We map genetic determinants of testis weight and testis gene expression using offspring of mice captured in a hybrid zone between M. musculus musculus and M. m. domesticus. Many generations of admixture enables high-resolution mapping of loci contributing to these sterility-related phenotypes. We identify complex interactions among sterility loci, suggesting multiple, non-independent genetic incompatibilities contribute to barriers to gene flow in the hybrid zone.

scholarly journals Asymmetric Reproductive Barriers and Gene Flow Promote the Rise of a Stable Hybrid Zone in the Mediterranean High Mountain

2021 ◽  
Vol 12 ◽  
Author(s):  
Mohamed Abdelaziz ◽  
A. Jesús Muñoz-Pajares ◽  
Modesto Berbel ◽  
Ana García-Muñoz ◽  
José M. Gómez ◽  
...  
Keyword(s):  
Gene Flow ◽  
Reproductive Isolation ◽  
Sierra Nevada ◽  
Hybrid Zone ◽  
High Elevation ◽  
Secondary Contact ◽  
High Mountain ◽  
Hybrid Zones ◽  
Reproductive Barriers ◽  
Sierra Nevada Mountains

Hybrid zones have the potential to shed light on evolutionary processes driving adaptation and speciation. Secondary contact hybrid zones are particularly powerful natural systems for studying the interaction between divergent genomes to understand the mode and rate at which reproductive isolation accumulates during speciation. We have studied a total of 720 plants belonging to five populations from two Erysimum (Brassicaceae) species presenting a contact zone in the Sierra Nevada mountains (SE Spain). The plants were phenotyped in 2007 and 2017, and most of them were genotyped the first year using 10 microsatellite markers. Plants coming from natural populations were grown in a common garden to evaluate the reproductive barriers between both species by means of controlled crosses. All the plants used for the field and greenhouse study were characterized by measuring traits related to plant size and flower size. We estimated the genetic molecular variances, the genetic differentiation, and the genetic structure by means of the F-statistic and Bayesian inference. We also estimated the amount of recent gene flow between populations. We found a narrow unimodal hybrid zone where the hybrid genotypes appear to have been maintained by significant levels of a unidirectional gene flow coming from parental populations and from weak reproductive isolation between them. Hybrid plants exhibited intermediate or vigorous phenotypes depending on the analyzed trait. The phenotypic differences between the hybrid and the parental plants were highly coherent between the field and controlled cross experiments and through time. The highly coherent results obtained by combining field, experimental, and genetic data demonstrate the existence of a stable and narrow unimodal hybrid zone between Erysimum mediohispanicum and Erysimum nevadense at the high elevation of the Sierra Nevada mountains.

scholarly journals Spatial variation in introgression along a toad hybrid zone in France

2019 ◽  
Author(s):  
I. van Riemsdijk ◽  
J.W. Arntzen ◽  
G. Bucciarelli ◽  
E. McCartney-Melstad ◽  
M. Rafajlović ◽  
...  
Keyword(s):  
Gene Flow ◽  
Reproductive Isolation ◽  
Hybrid Zone ◽  
Restriction Site ◽  
Bufo Bufo ◽  
Secondary Contact ◽  
Barrier Effect ◽  
Sequencing Data ◽  
Asymmetric Introgression ◽  
Stable Hybrid

AbstractThe barrier effect is a restriction of gene flow between diverged populations by barrier genes. Restriction of gene flow and asymmetric introgression over multiple transects indicates species wide (genetic) adaptations, whereas transect-specific barrier loci may indicate local adaptation to gene flow. Asymmetric introgression can be caused by selection, hybrid zone movement, asymmetric reproductive isolation, or a combination of these. We study two widely separated transects (northwest and southeast France) for the 900 km long hybrid zone between Bufo bufo and B. spinosus toads, using ~1200 markers from restriction-site associated DNA (RAD) sequencing data. Genomic and geographic clines were used to identify outlier markers which show restricted or elevated introgression. Twenty-six barrier markers are shared between transects (the union of 56 and 123 barrier markers identified in each transect), which is more than would be expected by chance. However, the number of barrier markers is twice as high in the southeast transect. In the northwest transect a high amount of (asymmetric) introgression from B. spinosus into B. bufo is consistent with hybrid zone movement or asymmetric reproductive isolation. In the southeast transect, introgression is symmetric and consistent with a stable hybrid zone. Differences between transects may be related to genetic sub-structure within B. bufo. A longer period of secondary contact in southeast France appears to result in a relatively stronger barrier effect than in the northwest. The Bufo hybrid zone provides an excellent opportunity to separate a general barrier to gene flow from local reductions in gene flow.

scholarly journals Natural hybridization among three Rhododendron species (Ericaceae) revealed by morphological and genomic evidence

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Wei Zheng ◽  
Li-Jun Yan ◽  
Kevin S. Burgess ◽  
Ya-Huang Luo ◽  
Jia-Yun Zou ◽  
...  
Keyword(s):  
Hybrid Zone ◽  
Adaptive Radiation ◽  
Sequence Data ◽  
Plastid Dna ◽  
Natural Hybridization ◽  
Morphological Data ◽  
Hybrid Zones ◽  
Evolutionary Mechanisms ◽  
Composition And Structure ◽  
Hybrid Classes

Abstract Background Natural hybridization can influence the adaptive response to selection and accelerate species diversification. Understanding the composition and structure of hybrid zones may elucidate patterns of hybridization processes that are important to the formation and maintenance of species, especially for taxa that have experienced rapidly adaptive radiation. Here, we used morphological traits, ddRAD-seq and plastid DNA sequence data to investigate the structure of a Rhododendron hybrid zone and uncover the hybridization patterns among three sympatric and closely related species. Results Our results show that the hybrid zone is complex, where bi-directional hybridization takes place among the three sympatric parental species: R. spinuliferum, R. scabrifolium, and R. spiciferum. Hybrids between R. spinuliferum and R. spiciferum (R. ×duclouxii) comprise multiple hybrid classes and a high proportion of F1 generation hybrids, while a novel hybrid taxon between R. spinuliferum and R. scabrifolium dominated the F2 generation, but no backcross individuals were detected. The hybrid zone showed basically coincident patterns of population structure between genomic and morphological data. Conclusions Natural hybridization exists among the three Rhododendron species in the hybrid zone, although patterns of hybrid formation vary between hybrid taxa, which may result in different evolutionary outcomes. This study represents a unique opportunity to dissect the ecological and evolutionary mechanisms associated with adaptive radiation of Rhododendron species in a biodiversity hotspot.

scholarly journals Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient

2017 ◽  
Author(s):  
Sean F. Ryan ◽  
Michael C. Fontaine ◽  
J. Mark Scriber ◽  
Michael E. Pfrender ◽  
Shawn T. O’Neil ◽  
...  
Keyword(s):  
Reproductive Isolation ◽  
Candidate Genes ◽  
Hybrid Zone ◽  
Z Chromosome ◽  
Hybrid Zones ◽  
Seasonal Adaptation ◽  
Developmental Threshold ◽  
Ecological Adaptations ◽  
A Genome ◽  
Genomic Regions

AbstractHybrid zones are a valuable tool for studying the process of speciation and for identifying the genomic regions undergoing divergence and the ecological (extrinsic) and non-ecological (intrinsic) factors involved. Here, we explored the genomic and geographic landscape of divergence in a hybrid zone between Papilio glaucus and Papilio canadensis. Using a genome scan of 28,417 ddRAD SNPs, we identified genomic regions under possible selection and examined their distribution in the context of previously identified candidate genes for ecological adaptations. We showed that differentiation was genome-wide, including multiple candidate genes for ecological adaptations, particularly those involved in seasonal adaptation and host plant detoxification. The Z-chromosome and four autosomes showed a disproportionate amount of differentiation, suggesting genes on these chromosomes play a potential role in reproductive isolation. Cline analyses of significantly differentiated genomic SNPs, and of species diagnostic genetic markers, showed a high degree of geographic coincidence (81%) and concordance (80%) and were associated with the geographic distribution of a climate-mediated developmental threshold (length of the growing season). A relatively large proportion (1.3%) of the outliers for divergent selection were not associated with candidate genes for ecological adaptations and may reflect the presence of previously unrecognized intrinsic barriers between these species. These results suggest that exogenous (climate-mediated) and endogenous (unknown) clines may have become coupled and act together to reinforce reproductive isolation. This approach of assessing divergence across both the genomic and geographic landscape can provide insight about the interplay between the genetic architecture of reproductive isolation and endogenous and exogenous selection.

scholarly journals Limited movement of a hybrid zone in relation to regional variation in magnitude of climate change

2021 ◽  
Author(s):  
Alana Alexander ◽  
Mark Robbins ◽  
Jesse Holmes ◽  
Robert Moyle ◽  
Townsend Peterson
Keyword(s):  
Climate Change ◽  
Reproductive Isolation ◽  
Hybrid Zone ◽  
Parental Species ◽  
Range Shifts ◽  
Hybrid Zones ◽  
Poecile Atricapillus ◽  
Temperature Trends ◽  
Additional Reference ◽  
Western Portion

Hybrid zones can provide clear documentation of range shifts in response to climate change and identify loci important to reproductive isolation. Using a deep temporal (36-38 years) comparison of the black-capped (Poecile atricapillus) and Carolina (P. carolinensis) chickadee hybrid zone, we investigated movement of the under-sampled western portion of the zone (western Missouri) as well as investigating whether loci and pathways underpinning reproductive isolation were similar to those from the eastern portion of the hybrid zone. Using 92 birds sampled along the hybrid zone transect in 2016, 68 birds sampled between 1978 and 1980, and 5 additional reference birds sampled from outside the hybrid zone, we generated 11,669 SNPs via ddRADseq. We used these SNPs to interpolate spatially and assess the movement of the hybrid zone interface through time, and to assess variation in introgression among loci. We demonstrate that the interface has moved approximately 5-8 km to the northwest over the last 36-38 years, i.e., at only one-fifth the rate at which the eastern portion of the hybrid zone (e.g. Pennsylvania, Ohio) has moved. Temperature trends across the last 38 years reveal that eastern areas have warmed 50% more than western areas in terms of annual mean temperature, possibly providing an explanation for the slower movement of the hybrid zone in Missouri. Using genomic cline analyses, we detected four genes that showed restricted introgression in both Missouri and Pennsylvania, including Pnoc, a gene involved in metabolism, learning and memory, concordant with previous physiological and behavioral findings on hybrids and the parental species.

scholarly journals Genome-Wide Mapping In A House Mouse Hybrid Zone Reveals Hybrid Sterility Loci And Dobzhansky-Muller Interactions

2014 ◽  
Author(s):  
Leslie Turner ◽  
Bettina Harr
Keyword(s):  
House Mouse ◽  
Hybrid Zone ◽  
Hybrid Sterility ◽  
Testis Weight ◽  
Hybrid Zones ◽  
Incipient Species ◽  
Complex Interactions ◽  
Genetic Mechanisms ◽  
Resolution Mapping ◽  
Genomic Regions

Mapping hybrid defects in contact zones between incipient species can identify genomic regions contributing to reproductive isolation and reveal genetic mechanisms of speciation. The house mouse features a rare combination of sophisticated genetic tools and natural hybrid zones between subspecies. Male hybrids often show reduced fertility, a common reproductive barrier between incipient species. Laboratory crosses have identified sterility loci, but each encompasses hundreds of genes. We map genetic determinants of testis weight and testis gene expression using offspring of mice captured in a hybrid zone between M. musculus musculus and M. m. domesticus. Many generations of admixture enables high-resolution mapping of loci contributing to these sterility-related phenotypes. We identify complex interactions among sterility loci, suggesting multiple, non-independent genetic incompatibilities contribute to barriers to gene flow in the hybrid zone.

scholarly journals X-Linked Signature of Reproductive Isolation in Humans is Mirrored in a Howler Monkey Hybrid Zone

2020 ◽  
Vol 111 (5) ◽  
pp. 419-428 ◽  
Author(s):  
Marcella D Baiz ◽  
Priscilla K Tucker ◽  
Jacob L Mueller ◽  
Liliana Cortés-Ortiz
Keyword(s):  
Reproductive Isolation ◽  
X Chromosome ◽  
Hybrid Zone ◽  
Sex Chromosome ◽  
Genomic Sequence ◽  
Alouatta Palliata ◽  
Model Systems ◽  
Howler Monkey ◽  
Autosomal Snps ◽  
Outlier Region

Abstract Reproductive isolation is a fundamental step in speciation. While sex chromosomes have been linked to reproductive isolation in many model systems, including hominids, genetic studies of the contribution of sex chromosome loci to speciation for natural populations are relatively sparse. Natural hybrid zones can help identify genomic regions contributing to reproductive isolation, like hybrid incompatibility loci, since these regions exhibit reduced introgression between parental species. Here, we use a primate hybrid zone (Alouatta palliata × Alouatta pigra) to test for reduced introgression of X-linked SNPs compared to autosomal SNPs. To identify X-linked sequence in A. palliata, we used a sex-biased mapping approach with whole-genome re-sequencing data. We then used genomic cline analysis with reduced-representation sequence data for parental A. palliata and A. pigra individuals and hybrids (n = 88) to identify regions with non-neutral introgression. We identified ~26 Mb of non-repetitive, putatively X-linked genomic sequence in A. palliata, most of which mapped collinearly to the marmoset and human X chromosomes. We found that X-linked SNPs had reduced introgression and an excess of ancestry from A. palliata as compared to autosomal SNPs. One outlier region with reduced introgression overlaps a previously described “desert” of archaic hominin ancestry on the human X chromosome. These results are consistent with a large role for the X chromosome in speciation across animal taxa and further, suggest shared features in the genomic basis of the evolution of reproductive isolation in primates.

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