Species boundaries in the Trichophyton mentagrophytes / T. interdigitale species complex

2018 ◽  
Vol 57 (6) ◽  
pp. 781-789 ◽  
Author(s):  
Ivan M Pchelin ◽  
Daniil V Azarov ◽  
Maria A Churina ◽  
Sergey G Scherbak ◽  
Svetlana V Apalko ◽  
...  
Keyword(s):  
Species Delimitation ◽  
Phylogenetic Network ◽  
Taxonomic Status ◽  
Epidemiological Data ◽  
Trichophyton Mentagrophytes ◽  
Species Boundaries ◽  
Data Sets ◽  
Internal Transcribed Spacer Region ◽  
Closely Related Species ◽  
The Status

AbstractThe fungi Trichophyton mentagrophytes and T. interdigitale are closely related species, causing superficial infections in humans and other mammals. The status of these taxa is a field of long-lasting debates. To clarify their phylogenetic relationships within the genus Trichophyton and sharpen the species boundaries, we performed sequencing of four T. mentagrophytes genomes and also evaluated three previously published multilocus data sets. We performed computational species delimitation analysis on all available in GenBank internal transcribed spacer region (ITS) sequences of Trichophyton spp. Phylogenomic data, phylogenetic network, and species delimitation analyses implied that T. mentagrophytes and T. interdigitale belong to the same phylogenetic species. However, we argue that taxonomic status quo should be retained, from the perspective of epidemiological data and the principle of taxonomic stability. Since there is a correlation between ITS genotype and epidemiological source of an isolate, restriction of T. interdigitale to purely anthropophilic ITS genotypes seems to be reasonable.

scholarly journals Molecular species delimitation in the primitively segmented spider genus Heptathela endemic to Japanese islands

2019 ◽  
Author(s):  
Xin Xu ◽  
Matjaž Kuntner ◽  
Jason E. Bond ◽  
Hirotsugu Ono ◽  
Simon Y. W. Ho ◽  
...  
Keyword(s):  
Molecular Species ◽  
Species Delimitation ◽  
Computational Time ◽  
Species Boundaries ◽  
Biological Research ◽  
Morphological Evidence ◽  
Data Sets ◽  
Bayesian Approaches ◽  
Multispecies Coalescent ◽  
Japanese Islands

ABSTRACTDetermining species boundaries forms an important foundation for biological research. However, the results of molecular species delimitation can vary with the data sets and methods that are used. Here we use a two-step approach to delimit species in the genus Heptathela, a group of primitively segmented trapdoor spiders that are endemic to Japanese islands. Morphological evidence suggests the existence of 19 species in the genus. We tested this initial species hypothesis by using six molecular species-delimitation methods to analyse 180 mitochondrial COI sequences of Heptathela sampled from across the known range of the genus. We then conducted a set of more focused analyses by sampling additional genetic markers from the subset of taxa that were inconsistently delimited by the single-locus analyses of mitochondrial DNA. Multilocus species delimitation was performed using two Bayesian approaches based on the multispecies coalescent. Our approach identified 20 putative species among the 180 sampled individuals of Heptathela. We suggest that our two-step approach provides an efficient strategy for delimiting species while minimizing costs and computational time.

On three unpublished lectotype designations and on the status and positions of Kreizbergius simo-group taxa (Lepidoptera, Papilionidae)

2018 ◽  
Vol 69 (2) ◽  
pp. 98-106
Author(s):  
Stanislav K. Korb
Keyword(s):  
Taxonomic Status ◽  
New Synonyms ◽  
The Status

The taxonomic status and positions of taxa described within the genus Kreizbergius Korshunov, 1990 (the simo-group sensu Ackery, 1975) are rearranged. Lectotypes of the following taxa are designated: Parnassius simo var. simonius Staudinger, 1889, Parnassius simo var. simulator Staudinger, 1889, Parnassius gylippos Fruhstorfer, 1903, Parnassius simo confusa Bang-Haas, 1927. It is shown that K. anrdeji (Eisner, 1930) is a subspecies of K. simonius and has the oldest available name K. simonius kozlovi Avinov, 1913. New synonyms within K. simo and K. simonius are established.

Archiving of Food Samples from Restaurants and Caterers—Quantitative Profiling of Outbreaks of Foodborne Salmonellosis in Japan

2004 ◽  
Vol 67 (9) ◽  
pp. 2024-2032 ◽  
Author(s):  
FUMIKO KASUGA ◽  
MASAMITSU HIROTA ◽  
MASAMICHI WADA ◽  
TOSHIHIKO YUNOKAWA ◽  
HAJIME TOYOFUKU ◽  
...  
Keyword(s):  
Dose Response ◽  
Storage System ◽  
Epidemiological Data ◽  
Food Samples ◽  
Food Storage ◽  
Disease Rate ◽  
Data Sets ◽  
Response Data ◽  
Quantitative Profiling

The Ministry of Health, Labor and Welfare (former MHW) of Japan issued a Directive in 1997 advising restaurants and caterers to freeze portions of both raw food and cooked dishes for at least 2 weeks. This system has been useful for determining vehicle foods at outbreaks. Enumeration of bacteria in samples of stored food provide data about pathogen concentrations in the implicated food. Data on Salmonella concentrations in vehicle foods associated with salmonellosis outbreaks were collected in Japan between 1989 and 1998. The 39 outbreaks that occurred during this period were categorized by the settings where the outbreaks took place, and epidemiological data from each outbreak were summarized. Characteristics of outbreak groups were analyzed and compared. The effect of new food-storage system on determination of bacterial concentration was evaluated. Freezing and nonfreezing conditions prior to microbial examination were compared in the dose-response relationship. Data from outbreaks in which implicated foods had been kept frozen suggested apparent correlation between the Salmonella dose ingested and the disease rate. Combined with results of epidemiological investigation, quantitative data from the ingested pathogen could provide complete dose-response data sets.

The tribe Aschistodesmini in the Solomon Islands (Diplopoda, Polydesmida: Paradoxosomatidae)

1999 ◽  
Vol 30 (4) ◽  
pp. 459-479
Author(s):  
C.A.W. Jeekel
Keyword(s):  
New Species ◽  
Related Species ◽  
Solomon Island ◽  
Solomon Islands ◽  
Closely Related Species ◽  
Two New Species ◽  
The Status

AbstractThe Aschistodesmini from the Solomon Island are reviewed. Besides clarifying notes on the status of the type and closely related species of Aschistodesmus, descriptive notes and illustrations of the gonopods of the Solomon species of this genus, particularly of those published by Chamberlin, 1920, under the generic name of Solomonosoma, are given. Two new species, A. spatulifer and A. tridentifer are described, and a key to the species is provided. From Rennell Island Dorcadogonus modestus gen. n., sp. n. is described.

Pseudodactylaria brevis sp. nov. from Thailand confirms the status of Pseudodactylariaceae

Phytotaxa ◽  
2018 ◽  
Vol 369 (4) ◽  
pp. 241 ◽  
Author(s):  
CHUAN-GEN LIN ◽  
ERIC H. C. MCKENZIE ◽  
DARBHE J. BHAT ◽  
JIAN-KUI LIU ◽  
KEVIN D. HYDE ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Sequence Data ◽  
Taxonomic Status ◽  
Its Sequence ◽  
Morphological Comparison ◽  
Phylogenetic Placement ◽  
Data Analyses ◽  
The Status ◽  
A New Species

A new species, Pseudodactylaria brevis, is described, illustrated and compared with other Pseudodactylaria and Dactylaria-like taxa. Evidence for the new species is provided by morphological comparison and sequence data analyses. Pseudodactylaria brevis can be distinguished from other Pseudodactylaria and Dactylaria-like species by its short hyaline conidiophores and fusiform, 1-septate hyaline conidia. Phylogenetic analysis of LSU and ITS sequence data was carried out to determine the phylogenetic placement of the species and confirm the taxonomic status of Pseudodactylariaceae.

Species delimitation of colour polymorphic Cladophorus (Coleoptera: Lycidae) from New Guinea

Zootaxa ◽  
2017 ◽  
Vol 4320 (3) ◽  
pp. 505 ◽  
Author(s):  
ROMANA KALOUSOVA ◽  
LADISLAV BOCAK
Keyword(s):  
Phylogenetic Analysis ◽  
Mitochondrial Dna ◽  
Related Species ◽  
Species Delimitation ◽  
Morphological Differentiation ◽  
Morphological Characters ◽  
Molecular Data ◽  
Closely Related Species ◽  
Dna Fragment ◽  
Colour Patterns

Cladophorus Guérin-Méneville, 1830 are endemic Papuan net-winged beetles which take part in highly diverse Müllerian mimicry rings. Available specimens were sequenced for cox1–tRNA-Leu–cox2 mitochondrial DNA fragment and the species delimitations were based on the genetic distance, phylogenetic analysis, and morphology. Three earlier described species were identified in the recently collected material and further 10 species are described: C. pallescens sp. nov., C. bicolor sp. nov., C. craterensis sp. nov., C. motykai sp. nov., C. mindikensis sp. nov., C. kailakiensis sp. nov., C. manokwarensis sp. nov., C. haiaensis sp. nov., C. humeralis sp. nov., and C. boceki sp. nov. DNA-based identifications provided some ambiguous results and closely related species could not be robustly delimited using solely molecular data. Additionally, the species limits were based on clearly defined morphological characters and the morphological differentiation was found unlinked from the genetic divergence. Colour patterns cannot be used for identification because all species available in more specimens were polymorphic and followed various local co-mimics. The Papuan fauna of Cladophorus is very diverse and the closely related species regularly occur in limited regions. Differentiation within restricted ranges is therefore considered as the main speciation mode. 

scholarly journals Urinary incontinence as the socioeconomic problem

2017 ◽  
Vol 16 (3) ◽  
pp. 62-66
Author(s):  
Krystyna Klimaszewska ◽  
Mariola Bartusek
Keyword(s):  
Urinary Incontinence ◽  
Epidemiological Data ◽  
Decision Makers ◽  
Health Needs ◽  
Public Funds ◽  
The Social ◽  
The Status ◽  
Costs Of Treatment ◽  
Social Discomfort

Abstract Introduction. Urinary incontinence, meaning irrespective of will leakage of urine, is a serious health problem, and has the status of social disease basing on the epidemiological data concerning number of affected populations suffering from it Taking into consideration the chronic character of the disease and increasing social discomfort including social exclusion, the costs of treatment and rehabilitation should be lower so patients could improve the quality of their lives in other aspects. That is why it is important to deeply analyze the costs of urinary incontinence in terms of diagnostics, treatment and rehabilitation. Aim. Costs analysis related to diagnostics and treatment of urinary incontinence incurred by patient, or co-financed/funded by the National Health Fund on the basis of the literature review. Summary. The few but regularly prepared reports show that there is a clear need for changes in the funding of services provided to patients with health needs. Both the social and economic aspects are important for each patient and should be deeply analysed by public funds decision makers. It would be much easier to take an action if the probability of complete cure was high.

Trogia benghalensis (Marasmiaceae, Basidiomycota), a new species from India

Phytotaxa ◽  
2017 ◽  
Vol 331 (2) ◽  
pp. 273 ◽  
Author(s):  
ARUN KUMAR DUTTA ◽  
SUDESHNA NANDI ◽  
ENTAJ TARAFDER ◽  
RIMPA SIKDER ◽  
ANIRBAN ROY ◽  
...  
Keyword(s):  
New Species ◽  
Related Species ◽  
Internal Transcribed Spacer ◽  
West Bengal ◽  
Internal Transcribed Spacer Region ◽  
Comprehensive Description ◽  
Closely Related Species ◽  
Molecular Sequence ◽  
Region Data ◽  
A New Species

A new species of Trogia (Marasmiaceae, Basidiomycota) is described from West Bengal, India. Analysis of the molecular sequence (nuclear ribosomal internal transcribed spacer region) data suggests that T. benghalesis is phylogenetically distinct from its closely related species. Comprehensive description based on macro- and microscopic characters, photographs and comparisons with morphologically similar and phylogenetically related species are provided.

Integrative taxonomic methods reveal an incorrect synonymisation of the South African Pseudonereis podocirra (Schmarda) as the widespread Pseudonereis variegata (Grube) from Chile

2018 ◽  
Vol 32 (6) ◽  
pp. 1282 ◽  
Author(s):  
Jyothi Kara ◽  
Angus H. H. Macdonald ◽  
Carol A. Simon
Keyword(s):  
South Africa ◽  
South African ◽  
Species Delimitation ◽  
Haplotype Network ◽  
The Body ◽  
General Description ◽  
The South ◽  
Morphological Examination ◽  
Genetic Structuring ◽  
The Status

The nereidid Pseudonereis variegata (Grube, 1866) described from Chile includes 14 synonymised species from 10 type localities with a discontinuous distribution, but no taxonomic or molecular studies have investigated the status of this species outside Chile. Two synonymised species, Mastigonereis podocirra Schmarda, 1861 and Nereis (Nereilepas) stimpsonis Grube, 1866, were described from South Africa and investigated here using morphological examination. MtCOI species delimitation analyses and morphology were used to determine the status of P. variegata in South Africa. Morphological examination revealed that museum and freshly collected specimens from South Africa that conform to the general description of P. variegata are similar to M. podocirra and N. stimpsonis with respect to the consistent absence of homogomph spinigers in the inferior neuropodial fascicle, expanded notopodial ligules and the subterminal attachment of dorsal cirri in posterior parapodia. The synonymy of M. podocirra and N. stimpsonis as P. variegata are rejected and P. podocirra, comb. nov. is reinstated. Morphologically, Pseudonereis podocirra differed from specimens from Chile with regard to the numbers of paragnaths, the absence of homogomph spinigers and changes in parapodial morphology along the body. Independence of these species was further supported by genetic distances, automatic barcode gap discovery and multi-rate Poisson tree process species delimitation analyses of 77 mtCOI sequences. Haplotype network revealed no genetic structuring within the South African populations. http://zoobank.org/urn:lsid:zoobank.org:pub:F0B1A5AF-9CE9-4A43-ACCF-17117E1C2F21

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