Complete Genome Sequence Resource for Xanthomonas fragariae Causing Crown Infection Pockets in Strawberry

Xanthomonas fragariae (X. fragariae ) is a global quarantine pathogen, which typically inflicting angular leaf spots. In the present study, we report a new 4.11 Mb high-quality genome sequence of X. fragariae YL19. YL19 can make the strawberry plants have the typical angular leaf spot symptom and have crown infection pockets symptom in China. This new symptom has not been reported in other X. fragariae. Compared with typical X. fragariae strains, including PD885, NBC2815, PD5205, Fap21, and Fap29, the genome and plasmid in YL19 were smaller in size, which lacked 109 coding genes and has more CAZymes genes and secondary metabolism genes. The YL19 genome ought to clarify the molecular mechanisms of genome evolution, host adaptation, and pathological process of X. fragariae and the improvement of strawberry management strategies.

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High-Quality Genome Resource of the Pathogen of Diaporthe (Phomopsis) phragmitis Causing Kiwifruit Soft Rot

Molecular Plant-Microbe Interactions ◽

10.1094/mpmi-08-20-0236-a ◽

2020 ◽

Cited By ~ 1

Author(s):

Pu Liu ◽

Wang Xiaojie ◽

Dong Hongjie ◽

Jianbin Lan ◽

Kuan Liang ◽

...

Keyword(s):

Plant Pathogens ◽

Management Strategies ◽

Soft Rot ◽

Fruit Rot ◽

Economic Plant ◽

High Quality ◽

Total Size ◽

Genome Wide ◽

Solid Foundation ◽

High Quality Genome

Diaporthe spp. are critical plant pathogens that cause wood cankers, wilt, dieback, and fruit rot in a wide variety of economic plant hosts and are regarded as one of the most acute threats faced by kiwifruit industry worldwide. Diaporthe phragmitis strain NJD1 is a highly pathogenic isolate of soft rot of kiwifruit. Here, we present a high-quality genome-wide sequence of D. phragmitis NJD1 that was assembled into 28 contigs containing a total size of 58.33 Mb and N50 length of 3.55 Mb. These results lay a solid foundation for understanding host–pathogen interaction and improving disease management strategies.

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Complete High-Quality Genome Sequence of Clostridium limosum (Hathewaya limosa) Isolate 14S0207, Recovered from a Cow with Suspected Blackleg in Germany

Microbiology Resource Announcements ◽

10.1128/mra.01487-19 ◽

2020 ◽

Vol 9 (2) ◽

Author(s):

Prasad Thomas ◽

Mostafa Y. Abdel-Glil ◽

Anne Busch ◽

Lothar H. Wieler ◽

Inga Eichhorn ◽

...

Keyword(s):

Genome Sequence ◽

Complete Genome Sequence ◽

Complete Genome ◽

Intestinal Tract ◽

High Quality ◽

Circular Chromosome ◽

Content Type ◽

High Quality Genome

Clostridium limosum can be found in soil and the intestinal tract of animals. In 2014, C. limosum was isolated from a suspected blackleg outbreak in cattle in Schleswig-Holstein, Germany. We present a complete genome sequence of a C. limosum strain represented by a circular chromosome and three plasmids.

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Genome Sequence Resource of Magnaporthe oryzae Laboratory Strain 2539

Molecular Plant-Microbe Interactions ◽

10.1094/mpmi-02-20-0036-a ◽

2020 ◽

Vol 33 (8) ◽

pp. 1029-1031

Author(s):

Meilian Chen ◽

Baohua Wang ◽

Guodong Lu ◽

Zhenhui Zhong ◽

Zonghua Wang

Keyword(s):

Genome Sequence ◽

Magnaporthe Oryzae ◽

Genome Assembly ◽

Laboratory Strain ◽

Model System ◽

Blast Disease ◽

High Quality ◽

Host Pathogen Interaction ◽

Host Pathogen ◽

High Quality Genome

Magnaporthe oryzae causes blast disease on more than 50 species of monocot plants, including important crops such as rice, millet, and most recently wheat. Additionally, it is an important model system for studying host-pathogen interaction. Here, we report a high-quality genome assembly and annotation of a laboratory strain 2539 of M. oryzae, which is a widely used progeny of a rice-infecting isolate and a grass-infecting isolate. The genome sequence of strain 2539 will be useful for studying the evolution, host adaption, and pathogenicity of M. oryzae, which will be beneficial for a better understanding of the mechanisms of host-pathogen interaction.

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High-quality genome sequence and description of Chryseobacterium senegalense sp. nov.

New Microbes and New Infections ◽

10.1016/j.nmni.2016.01.004 ◽

2016 ◽

Vol 10 ◽

pp. 93-100 ◽

Cited By ~ 3

Author(s):

C.I. Lo ◽

S.A. Sankar ◽

O. Mediannikov ◽

C.B. Ehounoud ◽

N. Labas ◽

...

Keyword(s):

Genome Sequence ◽

High Quality ◽

High Quality Genome

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Genome Sequence Resource for Elsinoë ampelina, the Causal Organism of Grapevine Anthracnose

Molecular Plant-Microbe Interactions ◽

10.1094/mpmi-12-19-0337-a ◽

2020 ◽

Vol 33 (4) ◽

pp. 576-579 ◽

Cited By ~ 2

Author(s):

Zhi Li ◽

Yanchun Fan ◽

Pingping Chang ◽

Linlin Gao ◽

Xiping Wang

Keyword(s):

Genome Sequence ◽

Management Strategies ◽

Comparative Genomic ◽

Causal Organism ◽

Protein Coding ◽

Protein Coding Genes ◽

Elsinoe Ampelina ◽

Genomic Studies ◽

High Quality Genome ◽

Ascomycetous Fungus

Elsinoë ampelina is an ascomycetous fungus that causes grape anthracnose, a potentially devastating disease worldwide. Here, we report a 28.29 Mb high-quality genome sequence of E. ampelina YL-1 that encodes 8,057 predicted protein-coding genes and represents the first sequenced genome assembly of E. ampelina. This study adds to the current genomic resources for the genus Elsinoë and paves the way for research on comparative genomic studies, E. ampelina–grape interactions, and improvement of management strategies.

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High-quality genome sequence of Pichia pastoris CBS7435

Journal of Biotechnology ◽

10.1016/j.jbiotec.2011.04.014 ◽

2011 ◽

Vol 154 (4) ◽

pp. 312-320 ◽

Cited By ~ 114

Author(s):

Andreas Küberl ◽

Jessica Schneider ◽

Gerhard G. Thallinger ◽

Ingund Anderl ◽

Daniel Wibberg ◽

...

Keyword(s):

Pichia Pastoris ◽

Genome Sequence ◽

High Quality ◽

High Quality Genome

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Genome sequence of Vibrio sp. SALL 6 isolated from shellfish

Progress In Microbes & Molecular Biology ◽

10.36877/pmmb.a0000044 ◽

2019 ◽

Vol 2 (1) ◽

Cited By ~ 1

Author(s):

Vengadesh Letchumanan ◽

Hooi-Leng Ser ◽

Wen-Si Tan ◽

Kok-Gan Chan ◽

Nurul-Syakima Ab Mutalib

Keyword(s):

United States ◽

Genome Sequence ◽

East Asian ◽

Foodborne Pathogen ◽

Clinical Infection ◽

Asian Countries ◽

High Quality ◽

Antibiotic Resistant ◽

Resistant Strains ◽

High Quality Genome

Members of the Vibrionaceae family are well known as foodborne pathogen that cause hazard to human in many forms of clinical infection and also affecting aquaculture via infection to livestock. This pathogen has caused seafood associated gastroenteritis cases in many countries including United States, Asian, and South East Asian countries. Antibiotics are usually used as prophylactic and therapeutic to manage the rising Vibrio infections, however, this in turn led to emergence of antibiotic resistant strains in the environments. Vibrio sp. SALL 6 isolated from shellfish was selected for genome sequencing to further explore its antimicrobial traits. Here, a high-quality genome sequence of Vibrio sp. SALL 6 is reported, while its genome reveals a potential for future antibiotic resistance managements.

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Genome sequence resource for the plant pathogen Sclerotinia sclerotiorum WH6 isolated in China

Plant Disease ◽

10.1094/pdis-01-21-0146-a ◽

2021 ◽

Author(s):

Xiong Zhang ◽

Xiaohui Cheng ◽

Lijiang Liu ◽

Shengyi Liu

Keyword(s):

Sclerotinia Sclerotiorum ◽

Genome Sequence ◽

Fungal Pathogen ◽

Sclerotinia Stem Rot ◽

High Quality ◽

Total Size ◽

Host Interactions ◽

A Genome ◽

The World ◽

High Quality Genome

Sclerotinia sclerotiorum is a notorious fungal pathogen that causes sclerotinia stem rot (SSR) on many important crops in China and worldwide. Here, we present a high- quality genome assembly of S. sclerotiorum strain WH6 using the PacBio SMRT cell platform. The assembled genome has a total size of 38.96 Mbp, with a contig N50 length of 1.90 Mbp, and encodes 10,512 predicted coding genes, including 685 secreted proteins and 65 effector candidates. This is the the first report of a genome sequence from China. The WH6 genome sequence provides a valuable resource for facilitating our understanding of S. sclerotiorum-host interactions and SSR control in China and the world.

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Genome Sequence of Fusarium oxysporum f. sp. conglutinans, the Etiological Agent of Cabbage Fusarium Wilt

Molecular Plant-Microbe Interactions ◽

10.1094/mpmi-08-20-0245-a ◽

2020 ◽

pp. MPMI-08-20-0245

Author(s):

Fangwei Yu ◽

Wei Zhang ◽

Shenyun Wang ◽

Hong Wang ◽

Li Yu ◽

...

Keyword(s):

Fusarium Oxysporum ◽

Fusarium Wilt ◽

Genome Sequence ◽

High Quality ◽

Total Size ◽

Protein Coding ◽

Long Read ◽

Race 1 ◽

High Quality Genome ◽

Open Access Article

Fusarium oxysporum f. sp. conglutinans is the causal agent of Fusarium wilt of cabbage (Brassica oleracea var. capitata L.), which results in severe yield loss. Here, we report a high-quality genome sequence of a race 1 strain (IVC-1) of F. oxysporum f. sp. conglutinans, which was assembled using a combination of PacBio long-read and Illumina short-read sequences. The assembled IVC-1 genome has a total size of 71.18 Mb, with a contig N50 length of 4.59 Mb, and encodes 23,374 predicted protein-coding genes. The high-quality genome of IVC-1 provides a valuable resource for facilitating our understanding of F. oxysporum f. sp. conglutinans–cabbage interaction. [Formula: see text] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

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