scholarly journals Selection of Biocontrol Agents of Pink Rot Based on Efficacy and Growth Kinetics Index Rankings

Plant Disease ◽  
2011 ◽  
Vol 95 (1) ◽  
pp. 24-30 ◽  
Author(s):  
Tugba Adiyaman ◽  
David A. Schisler ◽  
Patricia J. Slininger ◽  
Jennifer M. Sloan ◽  
Mark A. Jackson ◽  
...  

The microbiota of 84 different agricultural soils were transferred to separate samples of a γ irradiation-sterilized field soil enriched with potato periderm, and the resulting soils were assayed for biological suppressiveness to Phytophthora erythroseptica and their effect on zoospore production. The 13 most suppressive soil samples, which reduced zoospore production by 14 to 93% and disease severity on tubers by 6 to 21%, were used to isolate 279 organisms. Fourteen strains that reduce pink rot infections in preliminary tests were selected for further study. Six bacterial strains that reduced the severity of disease (P ≤ 0.05, Fischer's protected least significant difference) in subsequent tests were identified as Bacillus simplex (three strains), Pantoea agglomerans, Pseudomonas koreensis, and P. lini. Relative performance indices (RPIs) for biocontrol efficacy and for each of four kinetic parameters, including total colony-forming units (CFUmax), biomass production values (DWmax), cell production after 8 h (OD8), and time of recovery from oxygen depletion (DT) were calculated for each strain. Overall RPIEff,Kin values for each strain then were calculated using strain RPI values for both efficacy (RPIEff) and kinetics (RPIKin). Strains with the highest RPIEff,Kin possess the best biocontrol efficacy of the strains tested and liquid culture growth characteristics that suggest commercial development potential.

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Víctor Camilo Pulido-Blanco ◽  
Elberth Hernando Pinzón-Sandoval ◽  
Carlos Felipe González-Chavarro ◽  
Pablo Antonio Serrano-Cely

AbstractThe larval stages of Carmenta theobromae Busck (1910) and Simplicivalva ampliophilobia Davis, Gentili-Poole and Mitter (2008) attack the subcortical zone and pith in guava trees, respectively, in the first productive nucleus of fruit trees in Colombia: Hoya del Río Suárez (HRS). The presence of pest insects has been reported in 98% of the farms sampled in HRS (n = 124), with up to 96 and 11 simultaneous larvae per tree, respectively. Although the aspects of the basic biology and life cycle of both pests have been resolved, there are no strategies for managing populations in the field. Therefore, the aim of this study was to evaluate different management alternatives under laboratory and field conditions in HRS. In laboratory conditions, a completely randomized design was used in two separate experiments, each with six treatments: T1: Spinosad (a mixture of Spinosad A and D); T2: S-1,2-di(ethoxycarbonyl) ethyl 0,0-dimethylphosphorodithioate (chemical control); T3: Lecanicillium lecanii; T4: Beauveria bassiana; T5: Mix of B. bassiana and B. brongniartii, and T6: distilled water (control). The number of dead larvae per replicate per treatment was evaluated (DL), with experimental units of five and three larvae, respectively. In the field, to the two best alternatives found for each pest in the laboratory, pruning and keeping the area around the plants free of weeds were added as cultural management, in two separate additional experiments, each with three larvae as experimental unit per treatment. For C. theobromae, the best laboratory alternatives were chemical control (DL: 3.78) and L. lecanii (DL: 2.33), followed without statistical differences by B. bassiana (DL: 1.67). In the field, the virulence of B. bassiana improved (DL: 3), and together with pruning and keeping the area around the plants clear of weeds (DL: 3), they stood out as the best alternatives. For S. ampliophilobia under laboratory conditions, the best alternatives were Spinosad (2.74) and chemical control (DL: 2.66), without significant difference. In the field, there were no statistical differences between the alternatives, except for the control. This statistical parity of cultural practices, and biological and chemical management is an argument in favor of the use of the former to the detriment of the third, especially when the harmful effects of the molecule S-1,2 di (ethoxycarbonyl) ethyl 0, 0-dimethyl phosphorodithioate have been proven in air, water and agricultural soils, in addition to its association with thyroid cancer in humans. This is a strong argument to favor the use of synergies of cultural and biological management methods framed in IPM, as opposed to the use of chemical agents whose harmful effects are strongly documented, and whose use is becoming increasingly prohibited.


Soil Research ◽  
2009 ◽  
Vol 47 (2) ◽  
pp. 198 ◽  
Author(s):  
Shutao Chen ◽  
Yao Huang

Studies on the CO2 and N2O emission patterns of agricultural soils under different ploughing practices may provide an insight into the potential and magnitude of CO2 and N2O mitigation in highly managed farmland soils. In this study, field measurements of soil respiration and N2O flux with different ploughing depths were performed in the 2003–04 wheat (Triticum aestivum L.), 2004 maize (Zea mays L.), and 2004–05 wheat seasons. Soil temperature and moisture were simultaneously measured. Results showed that, in each cropping season, the seasonal variation in soil respiration developed with a similar pattern for different treatments, which was primarily regulated by soil temperature. This work demonstrates that ploughing depth can influence long-term loss of carbon from soil, but this was contingent on preceding cropping types. Given the same preceding cropping practice, no significant difference in N2O emission was found among different ploughing depths in each cropping season.


Soil Systems ◽  
2020 ◽  
Vol 4 (1) ◽  
pp. 6 ◽  
Author(s):  
Michael V. Schaefer ◽  
Nathaniel A. Bogie ◽  
Daniel Rath ◽  
Alison R. Marklein ◽  
Abdi Garniwan ◽  
...  

Increasing soil organic carbon (SOC) stocks in agricultural soils can contribute to stabilizing or even lowering atmospheric greenhouse gas (GHG) concentrations. Cover crop rotation has been shown to increase SOC and provide productivity benefits for agriculture. Here we used a split field design to evaluate the short-term effect of cover crop on SOC distribution and chemistry using a combination of bulk, isotopic, and spectroscopic analyses of size-and density-separated soil aggregates. Macroaggregates (>250 µm) incorporated additional plant material with cover crop as evidenced by more negative δ13C values (−25.4‰ with cover crop compared to −25.1‰ without cover crop) and increased phenolic (plant-like) resonance in carbon NEXAFS spectra. Iron EXAFS data showed that the Fe pool was composed of 17–21% Fe oxide with the remainder a mix of primary and secondary minerals. Comparison of oxalate and dithionite extractions suggests that cover crop may also increase Fe oxide crystallinity, especially in the dense (>2.4 g cm−3) soil fraction. Cover crop δ13C values were more negative across density fractions of bulk soil, indicating the presence of less processed organic carbon. Although no significant difference was observed in bulk SOC on a mass per mass basis between cover and no cover crop fields after one season, isotopic and spectroscopic data reveal enhanced carbon movement between aggregates in cover crop soil.


2018 ◽  
Vol 6 (3) ◽  
pp. 244-251
Author(s):  
G.M. Gberikon ◽  
I.I. Adeoti ◽  
I.O. Ogbonna

Bacteriological profiles of surface water samples treated with solar radiation, Moringa oleifera powder and water guard was carried out to ascertain their effectiveness in water treatment. Bacterial loads of the surface water collected from Umur and Bele streams in Gwer East Local Government area samples were determined before and after treatments and characterised using biochemical and molecular methods. Single and synergistic effects of these treatments on water quality were also examined. Bacteriological analysis showed that Umur stream had the highest bacterial loads of 4.47 x 103 cfu/mL while Bele had the lowest counts. There was significant reduction in the mean viable counts recorded for all the water samples (p ˂ 0.05). In the daily bacteria counts, the control water samples gave extremes values. There were no bacteria count recorded following combine treatment in water samples from Bele stream on the fifth day. Molecular analysis based on the 16S rRNA gene sequence showed bacterial strains to be phylogenetically close to bacterial strains which are capable of causing infectious diseases to man. Normal pH values were recorded in Umur stream while low pH values were recorded in Bele streams. Treatment impacted significantly on the pH of the water samples from Umur stream (p ˂ 0.05) while no significant difference was observed with water samples from Bele stream (p > 0.05). Treatment impacted significantly on turbidity in water sample from Umur stream (p ˂ 0.05). Sulphate was found to be within the permissible limit except for water sample from Bele stream which gave mean values within the range of 51.00 to 68.00 mg/L. Treatments impacted no significant difference on sulphate (p > 0.05). Surface water in these rural areas should be thoroughly treated before use. Int. J. Appl. Sci. Biotechnol. Vol 6(3): 244-251


Blood ◽  
2005 ◽  
Vol 106 (11) ◽  
pp. 2757-2757
Author(s):  
Priscila S. Scheucher ◽  
Barbara A.A. Santana ◽  
Rodrigo S. Abreu e Lima ◽  
Guilherme A.S. Santos ◽  
Aglair B. Garcia ◽  
...  

Abstract Acute promyelocytic leukemia (APL) is associated with the t(15;17) which generates the PML-RARa fusion gene. The encoded PML-RARα oncoprotein physically interacts with native PML impairing its function. PML is a potent inhibitor of proliferation and apoptosis. In addition, mouse embryonic fibroblasts in which PML was inactivated (PML−/− MEFs) exhibit a significant increase in the percentage (%) of cells in S phase accompanied by the decrease in the G0/G1 subpopulation. Transgenic mice (TM) hCG-PML-RARα develop a form of leukemia similar to human APL after a long period of latency, suggesting that PML-RARα expression is necessary but not sufficient to leukemogenesis. Leukemic cells of the TM model present increased proliferation associated with resistance of apoptosis. Nevertheless, it is not known whether these changes are present from birth and thus related to exclusively to PML/RARα expression, or appear late in life and are associated with additional mutagenic events. To address this issue, we have analyzed TM of different ages without hematological abnormalities. We characterized the distribution of cells in the phases of cell cycle, cell proliferation and resistance to apoptosis in vivo. Cell cycle was analyzed in bone marrow (BM) cells stained with propidium iodate (PI) and analyzed by flow cytometry (FC). In TM younger than 9m (n=12), there was no significant difference in cell cycle distribution compared to wild-type (WT) controls. In contrast, in TM older than 9m (n=15) the % of BM cells in S phase was significantly lower (TM=14,84 ± 3,39%; WT=18,26 ± 3,55%; p=0,005) and was associated with increase in the % of cells in G0/G1 (TM=81,69 ± 3,79%; WT=78,14 ± 3,70%; p=0,001). The proliferation was tested in vivo by injecting bromodeoxyuridine i.p. and assessing its incorporation by BM cells after 2h. Compared to WT controls, there was a significantly lower % of proliferating cells in TM older than 9m (19,48 ± 7,81 versus 23,20 ± 10,80% in WT; p=0,06). Apoptosis was induced by γ irradiation, and after 24h BM cells were obtained and stained with PI. The % of apoptotic cells was determined by quantifying sub-G0 peak by FC. BM cells from TM older than 9m, but not from younger mice, were resistant to apoptosis. In this age group, γ-irradiation induced a 2,24 ± 0,81-fold increase in the % of apoptotic cells, whereas in WT controls this increase was of 4,06 ± 3,01-fold (p=0,018). Finally, in order to analyze the transcriptional mechanisms subjacent to the resistance, we measured the expression of two candidate genes involved in cell cycle and apoptosis regulation: p21Waf1/Cip1 and CDKN2A. The analysis was restricted to myeloid precursors by isolating CD117+ cells through an immunomagnetic technique. We found that both p21Waf1/Cip1 and CDKN2A are up-regulated in TM older than 9m. Moreover, this up-regulation was detected in both irradiated and unirradiated TM. Our results showed that resistance to apoptosis is associated with a block of the transition G1/S in the pre-leukemic phase of hCG-PML-RARα TM model, in contrast with the previously demonstrated increase in proliferation and resistance to apoptosis in the leukemic phase. Therefore deregulation of cell cycle is a late event during APL genesis and may be associated with additional mutagenic events.


2000 ◽  
Vol 66 (8) ◽  
pp. 3134-3141 ◽  
Author(s):  
Edward Topp ◽  
Walter M. Mulbry ◽  
Hong Zhu ◽  
Sarah M. Nour ◽  
Diane Cuppels

ABSTRACT Atrazine, a herbicide widely used in corn production, is a frequently detected groundwater contaminant. Nine gram-positive bacterial strains able to use this herbicide as a sole source of nitrogen were isolated from four farms in central Canada. The strains were divided into two groups based on repetitive extragenic palindromic (rep)-PCR genomic fingerprinting with ERIC and BOXA1R primers. Based on 16S ribosomal DNA sequence analysis, both groups were identified as Nocardioides sp. strains. None of the isolates mineralized [ring-U-14C]atrazine. There was no hybridization to genomic DNA from these strains usingatzABC cloned from Pseudomonas sp. strain ADP or trzA cloned from Rhodococcus corallinus. S-Triazine degradation was studied in detail inNocardioides sp. strain C190. Oxygen was not required for atrazine degradation by whole cells or cell extracts. Based on high-pressure liquid chromatography and mass spectrometric analyses of products formed from atrazine in incubations of whole cells with H2 18O, sequential hydrolytic reactions converted atrazine to hydroxyatrazine and then to the end productN-ethylammelide. Isopropylamine, the putative product of the second hydrolytic reaction, supported growth as the sole carbon and nitrogen source. The triazine hydrolase from strain C190 was isolated and purified and found to have a Km for atrazine of 25 μM and a V max of 31 μmol/min/mg of protein. The subunit molecular mass of the protein was 52 kDa. Atrazine hydrolysis was not inhibited by 500 μM EDTA but was inhibited by 100 μM Mg, Cu, Co, or Zn. Whole cells and purified triazine hydrolase converted a range of chlorine or methylthio-substituted herbicides to the corresponding hydroxy derivatives. In summary, an atrazine-metabolizingNocardioides sp. widely distributed in agricultural soils degrades a range of s-triazine herbicides by means of a novel s-triazine hydrolase.


2001 ◽  
Vol 47 (7) ◽  
pp. 626-633 ◽  
Author(s):  
A L Molan ◽  
G T Attwood ◽  
B R Min ◽  
W C McNabb

Five strains of proteolytic rumen bacteria were treated with condensed tannins (CT) purified from Lotus pedunculatus and Lotus corniculatus to investigate their effect on the growth of these bacteria in vitro. Streptococcus bovis NCFB 2476, Eubacterium sp. C124b, Prevotella bryantii B14, Butyrivibrio fibrisolvens H17c, and Clostridium proteoclasticum B316Twere tested against 200, 400, and 600 µg CT·mL–1extracted from L. pedunculatus and L. corniculatus. In the absence of CT, all bacterial strains showed typical growth and reached maximum optical density (OD) after 6–8 h of incubation in a plant protein medium. Growth of Eubacterium sp., P. bryantii, and B. fibrisolvens was inhibited (P < 0.01–0.001) more by the CT from L. pedunculatus than by the CT from L. corniculatus. All strains continued to grow in the presence of 200 µg·mL–1of the CT from L. pedunculatus, but attained significantly (P < 0.05–0.01) lower maximum OD600values than (minus CT) controls, except for S. bovis. At 400 and 600 µg·mL–1, the addition of CT from L. pedunculatus inhibited (P < 0.05–0.001) the growth of all bacterial strains tested compared with controls. The growth of Eubacterium sp. and P. bryantii was stimulated for the first 4–6 h of incubation (P < 0.001) by 200 µg·mL–1of CT from L. corniculatus, but then declined leading to a significant difference in OD values compared with the controls. At 400 µg·mL–1, the CT from L. corniculatus reduced (P < 0.05–0.01) the growth of all strains except S. bovis, while 600 µg·mL–1inhibited (P < 0.01–0.001) the growth of all strains. To study the mechanism of CT action, the degradation of the large subunit (LSU) of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco; Fraction 1 Leaf protein) was followed after bacterial cells or Rubisco were preincubated with CT extracted from L. corniculatus and L. pedunculatus. Both preincubations decreased LSU degradation, but they differed in their response to polyethylene glycol (PEG) addition. Addition of PEG to CT–Rubisco preincubations negated the effects of CT, while PEG addition to CT–bacteria preincubations did not. This implies that the CT–bacterial interaction is stronger than the CT–Rubisco interaction or the interaction is of a different type. Also, L. pedunculatus CT reduced the degradation of the LSU to a greater extent than the CT from L. corniculatus when preincubated with bacteria.Key words: condensed tannins, growth, in vitro, proteolytic rumen bacteria, mode of action, Rubisco.


2021 ◽  
Vol 11 ◽  
Author(s):  
Francisco Massot ◽  
Panagiotis Gkorezis ◽  
Jonathan Van Hamme ◽  
Damian Marino ◽  
Bojana Spirovic Trifunovic ◽  
...  

The large-scale use of the herbicide glyphosate leads to growing ecotoxicological and human health concerns. Microbe-assisted phytoremediation arises as a good option to remove, contain, or degrade glyphosate from soils and waterbodies, and thus avoid further spreading to non-target areas. To achieve this, availability of plant-colonizing, glyphosate-tolerant and -degrading strains is required and at the same time, it must be linked to plant-microorganism interaction studies focusing on a substantive ability to colonize the roots and degrade or transform the herbicide. In this work, we isolated bacteria from a chronically glyphosate-exposed site in Argentina, evaluated their glyphosate tolerance using the minimum inhibitory concentration assay, their in vitro degradation potential, their plant growth-promotion traits, and performed whole genome sequencing to gain insight into the application of a phytoremediation strategy to remediate glyphosate contaminated agronomic soils. Twenty-four soil and root-associated bacterial strains were isolated. Sixteen could grow using glyphosate as the sole source of phosphorous. As shown in MIC assay, some strains tolerated up to 10000 mg kg–1 of glyphosate. Most of them also demonstrated a diverse spectrum of in vitro plant growth-promotion traits, confirmed in their genome sequences. Two representative isolates were studied for their root colonization. An isolate of Ochrobactrum haematophilum exhibited different colonization patterns in the rhizoplane compared to an isolate of Rhizobium sp. Both strains were able to metabolize almost 50% of the original glyphosate concentration of 50 mg l–1 in 9 days. In a microcosms experiment with Lotus corniculatus L, O. haematophilum performed better than Rhizobium, with 97% of glyphosate transformed after 20 days. The results suggest that L. corniculatus in combination with to O. haematophilum can be adopted for phytoremediation of glyphosate on agricultural soils. An effective strategy is presented of linking the experimental data from the isolation of tolerant bacteria with performing plant-bacteria interaction tests to demonstrate positive effects on the removal of glyphosate from soils.


2020 ◽  
Vol 17 (35) ◽  
pp. 315-326
Author(s):  
Qusai Hattab MADHI ◽  
Mohammed Hamza ABASS ◽  
Abdulnabi Abdul Ameer MATROOD

This study was conducted to estimate the level of some heavy metals, mainly Lead (Pb), cadmium (Cd), chromium (Cr) and cobalt (Co) in the soil and wheat leaves of some wheat fields in Basra and Maysan province; the sampling areas were Al-Qurna, Al-Madinah, Al-Amara, Kumit, Ali Al-Sharqi, and Ali Al-Gharbi. It was performed the analysis using the Flame Atomic Spectrophotometer. The results indicated an increase in the concentrations of above mentioned these heavy metals in all examined areas; the levels in agricultural soils were found to be exceeding the internationally permissible limits according to EU-2000 standards, the highest levels of pollution were observed at Al- Qurna site with significant differences than other sites for both available and total HMs concentrations in soils. Indicating that the arrangement of the metals according to their available concentrations in the analyzed soil was as follows: lead (21.32 )˃ cobalt (14.63) ˃ chromium (11.06) ˃ cadmium (1.15) as mg/Kg of soil. Additionally, results showed that the highest lead content in the wheat leaves was examined in the Qurna fields (0.175 mg/kg), followed by Amara with a concentration of 0.136 mg/kg. The lowest concentration of lead was observed in wheat leaves in the Kumit fields (0.007 mg/kg). In terms of Cd concentration in wheat leaves, the highest level was observed in Al-Qurna, with a significant difference from other fields, reaching 0.009 mg/kg. The lowest concentration of this HM was recorded in Ali Al-Gharbi, which reached 0.002 mg/kg. The results of the correlation between the available concentration of heavy metals elements and soil characteristics revealed a significant correlation between the soil pH and lead, cadmium, and chromium available concentrations, whereas no correlation with cobalt and a significant correlation between soil EC and lead was observed and a highly significant negative correlation with the cobalt. Results proved the high levels of pollution in all examined areas in Basra and Maysan provinces.


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