scholarly journals Genetic Composition of Phytophthora infestans in Canada Reveals Migration and Increased Diversity

Plant Disease ◽  
2012 ◽  
Vol 96 (12) ◽  
pp. 1729-1735 ◽  
Author(s):  
Melanie L. Kalischuk ◽  
Khalil I. Al-Mughrabi ◽  
Rick D. Peters ◽  
Ron J. Howard ◽  
H. W. (Bud) Platt ◽  
...  
Keyword(s):  
Sexual Reproduction ◽  
Phytophthora Infestans ◽  
Prince Edward Island ◽  
Weather Conditions ◽  
The United States ◽  
Potato Seed ◽  
Polymorphism Analysis ◽  
Mating Types ◽  
Long Distance ◽  
Canadian Provinces

A dramatic increase in the incidence of late blight and changes within populations of Phytophthora infestans have been observed in various regions of Canada. In this study, the occurrence of several new genotypes of the pathogen was documented with associated phenotypes that dominated pathogen populations. Genotype US-23, previously detected only among isolates from the United States, dominated in the western Canadian provinces of British Columbia, Alberta (AB), Saskatchewan, and Manitoba (MB). Although isolates of US-23 infect both potato and tomato, these isolates were the only genotype recovered from commercial garden centers in Canada. Isolates of genotype US-8, previously dominant throughout Canada, represented the only genotype detected from the eastern Canadian provinces of New Brunswick and Prince Edward Island. Isolates of other genotypes detected in Canada included US-11 in AB, US-24 in MB, and US-22 in Ontario (ON). An additional genotype was detected in ON which appears to be a derivative of US-22 that may have arisen through sexual reproduction. However, evidence of clonal reproduction dominated among the isolates collected, and opportunities for sexual reproduction were probably limited because of a surprising geographic separation of the A1 and A2 mating types in Canada. Sensitivity of the US-22, US-23, and US-24 isolates to the fungicide metalaxyl, movement of potato seed and transplants, and weather conditions may have contributed to reduced opportunities for contact between the mating types in fields in Canada. All P. infestans isolates were readily distinguished from other related oomycetes with RG57 restriction fragment length polymorphism analysis. Long-distance movement in seed tubers and garden center transplants may have contributed to the rapid spread of the P. infestans genotypes across Canada. Tracking pathogen movement and population composition should improve the ability to predict the genotypes expected each year in different regions of Canada.

scholarly journals Genetic Change Within Populations of Phytophthora infestans in the United States and Canada During 1994 to 1996: Role of Migration and Recombination

1998 ◽  
Vol 88 (9) ◽  
pp. 939-949 ◽  
Author(s):  
Stephen B. Goodwin ◽  
Christine D. Smart ◽  
Robert W. Sandrock ◽  
Kenneth L. Deahl ◽  
Zamir K. Punja ◽  
...  
Keyword(s):  
United States ◽  
Sexual Reproduction ◽  
Phytophthora Infestans ◽  
High Sensitivity ◽  
The United States ◽  
Rapid Identification ◽  
Mating Types ◽  
Long Distance ◽  
New Genotype ◽  
The Us

Dramatic changes occurred within populations of Phytophthora infestans in the United States and Canada from 1994 through 1996. Occurrence of the US-8 genotype, detected rarely during 1992 and 1993, increased rapidly and predominated in most regions during 1994 through 1996. US-7, which infected both potato and tomato and made up almost 50% of the sample during 1993, was detected only rarely among 330 isolates from the United States analyzed during 1994. It was not detected at all in more limited samples from 1996. Thus, ability to infect both potato and tomato apparently did not increase the fitness of this genotype relative to US-8, as predicted previously. US-1, the previously dominant genotype throughout the United States and Canada, made up 8% or less of the samples analyzed during 1994 through 1996. A few additional genotypes were detected, which could indicate the beginnings of sexual reproduction of P. infestans within the United States and Canada. However, clonal reproduction still predominated in all locations sampled; opportunities for sexual reproduction probably were limited, because the A1 and A2 mating types usually were separated geographically. The high sensitivity of the US-1 genotype to the fungicide metalaxyl also could have reduced opportunities for contact between the mating types in fields where this compound was applied. The previous correlation between metalaxyl sensitivity and genotype was confirmed and extended to a new genotype, US-17: all US-1 isolates tested were sensitive; all isolates of the US-7, US-8, and US-17 genotypes tested to date have been resistant. Isolates of P. capsici and P. erythroseptica, two other species often found on tomato and potato, could be easily distinguished from each other and from P. infestans using a simple allozyme assay for the enzyme glucose-6-phosphate isomerase. This technique could be useful for rapid identification of species, in addition to genotype of P. infestans. It generally was not possible to predict which genotypes would be present in a location from 1 year to the next. Long-distance movement of US-8 in seed tubers was documented, and this was probably the primary means for the rapid spread of this genotype from 1993 through 1996.

scholarly journals Genetic Structure of the Phytophthora infestans Population in Morocco

Plant Disease ◽  
2000 ◽  
Vol 84 (2) ◽  
pp. 173-176 ◽  
Author(s):  
M. Sedegui ◽  
R. B. Carroll ◽  
A. L. Morehart ◽  
T. A. Evans ◽  
S. H. Kim ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Late Blight ◽  
Sexual Reproduction ◽  
Phytophthora Infestans ◽  
Mating Type ◽  
Potato Seed ◽  
Mating Types ◽  
Potato Field ◽  
New Genotype

ABSRACT In 1996 to 1998, a late-blight survey was conducted in potato- and tomato-growing regions of Morocco. A total of 149 isolates of Phytophthora infestans were collected and analyzed for the glucose-6-phosphate isomerase (Gpi) and peptidase (Pep) alleles, mating types, and metalaxyl sensitivities. Four genotypes were identified: MO-1 (mating type A1, Gpi 100/100, Pep 92/100), MO-2 (mating type A1, Gpi 86/100, Pep 92/100), MO-3 (mating type A2 Gpi 100/100, Pep 100/100), and MO-4 (mating type A1, Gpi 100/100, Pep 100/100). The potato isolates were MO-1 (1996 & 97), MO-3 (1998), and MO-4 (1998). The frequencies of A1 (MO-4) and A2 (MO-3) mating types in potato fields in 1998 were 26 and 74%, respectively. Potato isolates were pathogenic to both potatoes and tomatoes. The isolates collected from tomatoes in 1997 and 1998 were MO-2. Potato and tomato isolates were insensitive and sensitive to metalaxyl, respectively. The change of genotype population in 1998 was probably caused by migration of a new genotype from Europe associated with importation of potato seed. The detection of A1 and A2 mating types in the same potato field indicates the potential for sexual reproduction of P. infestans in Morocco.

scholarly journals Phenotypic Characterization of Recent Clonal Lineages of Phytophthora infestans in the United States

Plant Disease ◽  
2013 ◽  
Vol 97 (7) ◽  
pp. 873-881 ◽  
Author(s):  
G. Danies ◽  
I. M. Small ◽  
K. Myers ◽  
R. Childers ◽  
W. E. Fry
Keyword(s):  
United States ◽  
Late Blight ◽  
Phytophthora Infestans ◽  
The United States ◽  
Phenotypic Characterization ◽  
Phenotypic Traits ◽  
Mating Types ◽  
Late Blight Disease ◽  
Blight Disease

Phytophthora infestans, the causal agent of late blight disease, has been reported in the United States and Canada since the mid-nineteenth century. Due to the lack of or very limited sexual reproduction, the populations of P. infestans in the United States are primarily reproducing asexually and, thus, show a simple genetic structure. The emergence of new clonal lineages of P. infestans (US-22, US-23, and US-24) responsible for the late blight epidemics in the northeastern region of the United States in the summers of 2009 and 2010 stimulated an investigation into phenotypic traits associated with these genotypes. Mating type, differences in sensitivity to mefenoxam, differences in pathogenicity on potato and tomato, and differences in rate of germination were studied for clonal lineages US-8, US-22, US-23, and US-24. Both A1 and A2 mating types were detected. Lineages US-22, US-23, and US-24 were generally sensitive to mefenoxam while US-8 was resistant. US-8 and US-24 were primarily pathogenic on potato while US-22 and US-23 were pathogenic on both potato and tomato. Indirect germination was favored at lower temperatures (5 and 10°C) whereas direct germination, though uncommon, was favored at higher temperatures (20 and 25°C). Sporangia of US-24 released zoospores more rapidly than did sporangia of US-22 and US-23. The association of characteristic phenotypic traits with genotype enables the prediction of phenotypic traits from rapid genotypic analyses for improved disease management.

scholarly journals The Occurrence of PVYO, PVYN, and PVYN:O Strains of Potato virus Y in Certified Potato Seed Lot Trials in Washington and Oregon

Plant Disease ◽  
2006 ◽  
Vol 90 (8) ◽  
pp. 1102-1105 ◽  
Author(s):  
J. M. Crosslin ◽  
P. B. Hamm ◽  
D. C. Hane ◽  
J. Jaeger ◽  
C. R. Brown ◽  
...  
Keyword(s):  
Potato Virus ◽  
Potato Virus Y ◽  
General Trend ◽  
Potato Production ◽  
The United States ◽  
Yield Reduction ◽  
Potato Seed ◽  
Seed Origin ◽  
Canadian Provinces ◽  
Certified Potato Seed

Totals of 960 and 286 certified potato seed lots from locations across North America were planted in trials in Washington and Oregon, respectively, in 2001 to 2003 and tested for strains of Potato virus Y (PVY). The incidence of PVYO-infected lots averaged 16.4 and 25.9% in the Washington and Oregon trials, respectively. There was a general trend of increasing incidence of the PVYO, PVYN:O, and PVYN strains during this period, as evidenced by more infected cultivars, sites of seed origin, and number of seed growers providing infected seed lots. In particular, there was a dramatic increase in seed lots with the PVYN:O strain from 2002 to 2003. PVYN:O, in contrast to PVYO, which only causes yield reduction, also causes internal and external damage to tubers, making them unmarketable. In 2003, PVYN:O occurred in seed lots originating in eight states and three Canadian provinces. The increased incidence of PVYN:O was likely due to the difficulty in differentiating this strain from PVYO. The prevalence of PVY in potato seed lots documented herein poses a threat to potato production in the United States and suggests that current measures to reduce the incidence of this virus are inadequate.

scholarly journals Increased Difficulties to Control Late Blight in Tunisia Are Caused by a Genetically Diverse Phytophthora infestans Population Next to the Clonal Lineage NA-01

Plant Disease ◽  
2014 ◽  
Vol 98 (7) ◽  
pp. 898-908 ◽  
Author(s):  
Kalthoum Harbaoui ◽  
Walid Hamada ◽  
Ying Li ◽  
Vivianne G. A. A. Vleeshouwers ◽  
Theo van der Lee
Keyword(s):  
Genetic Diversity ◽  
Late Blight ◽  
Phytophthora Infestans ◽  
Agricultural Practices ◽  
Weather Conditions ◽  
Genotypic Diversity ◽  
Mitochondrial Haplotype ◽  
Potato Seed ◽  
Clonal Lineage ◽  
High Genetic Diversity

In Tunisia, late blight caused by Phytophthora infestans is a serious threat to potato and tomato. The Mediterranean weather conditions can be conducive to infection in all seasons and the host crops, tomato and potato, are grown year round. Potato is planted and harvested in two to four overlapping intervals from August to June and tomato is grown both in open fields and in greenhouses. The consequences of these agricultural practices and the massive import of seed potato on the genetic variation of P. infestans are largely unknown. We conducted a survey in which 165 P. infestans isolates, collected from five subregions in Tunisia between 2006 and 2008, on which we studied genotypic diversity through nuclear (simple-sequence repeat [SSR]) markers and combined this with a previous study on their mitochondrial haplotypes (mtDNA). The phylogenetic analysis revealed the presence of a major clonal lineage (NA-01, A1 mating type, mitochondrial haplotype Ia). Isolates belonging to this clonal lineage were found in all regions and showed a relatively simple virulence pattern on a potato differential set carrying different Solanum demissum resistance genes. Apart from isolates belonging to this NA-01 clonal lineage, a group of isolates was found that showed a high genetic diversity, comprising both mating types and a more complex race structure that was found in the regions where late blight on potato was more difficult to control. The population on potato and tomato seems to be under different selection pressures. Isolates collected from tomato showed a low genetic diversity even though potato isolates collected simultaneously from the same location showed a high genetic diversity. Based on the SSR profile comparison, we could demonstrate that the four major clonal lineages found in the Netherlands and also in other European countries could not be found in Tunisia. Despite the massive import of potato seed from Europe, the P. infestans population in Tunisia was found to be clearly distinct.

scholarly journals Mating-Type Distribution and Genetic Diversity of Cercospora sojina Populations on Soybean from Arkansas: Evidence for Potential Sexual Reproduction

2013 ◽  
Vol 103 (10) ◽  
pp. 1045-1051 ◽  
Author(s):  
Hun Kim ◽  
Annakay D. Newell ◽  
Robyn G. Cota-Sieckmeyer ◽  
John C. Rupe ◽  
Ahmad M. Fakhoury ◽  
...  
Keyword(s):  
Sexual Reproduction ◽  
Mating Type ◽  
Spatial Scales ◽  
Genotypic Diversity ◽  
The United States ◽  
Economic Losses ◽  
Mating Types ◽  
Cercospora Sojina ◽  
Single Leaf ◽  
Corrected Data

Cercospora sojina causes frogeye leaf spot of soybean, which can cause serious economic losses in the United States. In this study, 132 C. sojina isolates were collected from six fields (from two counties, Cross and Crawford) in Arkansas. To determine mating type, a multiplex polymerase chain reaction assay was developed with primers specific for C. sojina. Of the 132 isolates, 68 isolates had the MAT1-1-1 idiomorph and 64 isolates had the MAT1-2 idiomorph; no isolates possessed both idiomorphs. Both mating types were present in a variety of spatial scales, including separate lesions on individual leaves. Clone-corrected data from eight microsatellites indicated that mating-type loci were present in approximately equal proportions in all populations analyzed, which suggests that Arkansas populations of C. sojina are undergoing cryptic sexual reproduction. All six populations evaluated had high genotypic diversity of 26 to 79%. In addition, among strains isolated from a single leaf, multiple and distinct haplotypes were associated with both mating types, supporting the hypothesis that sexual reproduction occurs within the populations. Most populations showed significant gametic disequilibrium but levels of disequilibrium were relatively low, particularly in populations from Crawford County. A low differentiation index (GST) was observed for all simple-sequence repeat markers across all populations. Furthermore, the value of G statistics between populations suggests that significant genetic exchange exists among the populations. Taken together, these results demonstrate that C. sojina populations from Arkansas are genetically diverse and most likely undergoing sexual reproduction.

scholarly journals Significance of Sexual Reproduction of Phytophthora infestans in the Czech Republic

2018 ◽  
Vol 66 (5) ◽  
pp. 1191-1197
Author(s):  
Jana Mazáková ◽  
Miloslav Zouhar ◽  
Pavel Ryšánek
Keyword(s):  
Czech Republic ◽  
Late Blight ◽  
Sexual Reproduction ◽  
Phytophthora Infestans ◽  
Growing Season ◽  
Field Conditions ◽  
Effect Of Temperature ◽  
Mating Types ◽  
The Czech Republic ◽  
Leaf Discs

A total of 187 naturally late blight‑diseased potato leaves were sampled from 31 sites and five regions of the Czech Republic during the growing season in 2012–2014 and 2016 and examined microscopically for the ability of Phytophthora infestans to produce oospores in infected leaves under field conditions. Although the occurrence of the A1 and A2 mating types required for sexual reproduction of P. infestans was previously confirmed in the Czech Republic, no oospores were detected in this study. To study the effect of temperature on the survival of oospores produced from crosses of three pairs of P. infestans isolates, oospores in leaf discs and agar were exposed to temperatures ranging from –24 to 10 °C and then evaluated for viability with the plasmolysis test. Oospore viability ranged from 13.02 to 63.90 % and from 7.77 to 63.37 % for oospores produced in agar and leaf discs, respectively, with the highest frequencies of viable oospores occurring at 4 and 10 °C. To determine whether oospores may survive under field conditions, agar plates with oospores were buried in soil in Prague‑Suchdol and Svitavy for seven months during the overwintering period (October–May) in 2011–2015. There were statistically significant differences in oospore viability examined by the plasmolysis test between the localities, and oospore viability ranged from 29 to 43 % and from 15 to 44 % in Prague‑Suchdol and Svitavy, respectively.

scholarly journals Relating Epidemic Progress from a General Disease Model to Seasonal Appearance Time of Rusts in the United States: Implications for Soybean Rust

2006 ◽  
Vol 96 (4) ◽  
pp. 400-407 ◽  
Author(s):  
Shimon Pivonia ◽  
X. B. Yang
Keyword(s):  
United States ◽  
Disease Model ◽  
Weather Conditions ◽  
The United States ◽  
Soybean Rust ◽  
Long Distance ◽  
Appearance Time ◽  
Comparative Epidemiology ◽  
Lag Period ◽  
The U.S

Soybean rust, Phakopsora pachyrhizi, has been considered a threat to the production of the U.S. soybean, Glycine max. During the past decade, this disease gradually spread to Africa, South America, and recently to the United States. Previous soybean rust risk assessments with an assumption of availability of spores early in a season showed that weather conditions (dew and temperature) during a growing season, in general, are suitable for disease development in U.S. soybean-growing regions. Predicting the time of rust appearance in a field is critical to determining the destructive potential of rusts, including soybean rust. In this study, comparative epidemiology was used to assess likely rust incipient time in four locations within the U.S. Soybean Belt from south to north: Baton Rouge, LA; Charlotte, NC; Indianapolis, IN; and Minneapolis, MN. Temperature effects on the infection cycle of five rusts occurring in the Midwest were evaluated using a general disease model. The likely incipient times were examined with the modeling results. Among the rusts studied, early-appearing rusts had suitable conditions for development earlier in a season. However, a lag period of several weeks to more than 3 months was found from the time when conditions are suitable for a rust to develop or when hosts are available to the time when the rust was detected in fields. Length of the lag period differed among the rust species examined. If nature of long-distance dispersal is not significantly different among the rusts, implications of our study to the expected seasonal soybean rust incipience in fields lead to two possible scenarios: (i) average appearance time of soybean rust across the Soybean Belt should be somewhere between appearance times of common corn rust and southern corn rust, and (ii) with late appearance of the disease, late-planted soybean in the south has greater risk.

scholarly journals Outbreak of Potato Late Blight and First Report of Mating Type A2 and Metalaxyl Resistance of Phytophthora infestans in Iceland

Plant Disease ◽  
2001 ◽  
Vol 85 (5) ◽  
pp. 559-559 ◽  
Author(s):  
S. Olafsson ◽  
A. Hermansen
Keyword(s):  
Late Blight ◽  
Phytophthora Infestans ◽  
Weather Conditions ◽  
Limiting Factor ◽  
Mating Types ◽  
Initial Inoculum ◽  
Seed Potatoes ◽  
Metalaxyl Resistance ◽  
Pure Cultures

Late blight caused by Phytophthora infestans (Mont.) de Bary was endemic on potato in Iceland from about 1890 until 1961. Probably because of a cooler climate in the 1960s, the disease disappeared and there were no epidemics until 1990 and 1991. Late blight was not found in the period 1992 to 1998 even though the weather conditions were favorable for epidemic development in some of the years. Lack of initial inoculum was probably the limiting factor for an epidemic in Iceland some years. During the summer of 1999, late blight reappeared in Iceland. In August 1999, potato leaves with single lesions of late blight were sampled from two locations and sent to the Norwegian Crop Research Institute. Isolates were trapped by placing infected leaves under tuber slices in petri dishes. Pure cultures were made by picking small pieces of mycelium from the upper side of the potato slice after 7 to 10 days incubation at 15°C and plating them onto modified rye B agar with antibiotics (1). Sixteen isolates maintained on rye B agar were paired with reference isolates of mating types A1and A2 and examined for oospores at the hyphal interfaces between the isolates (1). One isolate was typed as A2 and 15 isolates were A1. Response to metalaxyl was determined for 13 isolates in vitro (1) on rye B agar amended with 5 mg/l metalaxyl-m. One of the A1 isolates was metalaxyl-resistant and 12 isolates, including the A2 isolate, showed intermediate resistance to the fungicide. These data show that the “new” population of P. infestans is now present in Iceland as in the other Nordic countries (1). Iceland imports some seed potatoes each year, mainly from the Netherlands. Imported seed potatoes were probably the source of initial inoculum in 1999 in Iceland. In the future, oospores in the soil might be an additional inoculum source in Iceland since both mating types are now present. Reference: (1) A. Hermansen et al. Plant Pathol. 49:11, 2000.

scholarly journals First Report of Late Blight Caused by Phytophthora infestans Clonal Lineage US-23 on Tomato and Potato in Wisconsin, United States

Plant Disease ◽  
2013 ◽  
Vol 97 (6) ◽  
pp. 839-839 ◽  
Author(s):  
A. J. Gevens ◽  
A. C. Seidl
Keyword(s):  
United States ◽  
Late Blight ◽  
Phytophthora Infestans ◽  
Weather Conditions ◽  
The United States ◽  
Clonal Lineage ◽  
Banding Patterns ◽  
First Report ◽  
Low Incidence ◽  
Epidemiological Characteristics

Tomato (Solanum lycopersicum) and potato (S. tuberosum) crops are grown on over 67,000 acres (27,114 ha) in Wisconsin annually. Late blight, caused by Phytophthora infestans (Mont.) deBary, is a potentially devastating disease that affects tomato and potato crops in Wisconsin every few years when inoculum is introduced and weather conditions favor disease. Incidence and severity of late blight are highly variable in these few years due to differences in pathogen clonal lineages, their timing and means of introduction, and weather conditions. Prevention of this disease through preventative application of fungicides can cost producers millions of dollars per year in additional chemical, fuel, and labor expenses. In 2009, late blight caused by P. infestans clonal lineage US-23 was observed on potato very late in the season in Vernon County, southwestern Wisconsin, in very low incidence and severity. In 2010, US-23 again appeared but on tomato in two southeastern Wisconsin counties, Waukesha and Ozaukee, again in low incidence and severity. Clonal lineages of P. infestans documented in Wisconsin in previous epidemics included US-8 in the mid-1990s and US-1 in the 1970s. Populations of P. infestans in the United States have recently undergone significant genetic change, resulting in isolates with unique clonal lineages and epidemiological characteristics (1). Foliar symptoms included water-soaked to dark brown circular lesions with pale green haloes accompanied by white pathogen sporulation. On tomato fruit, lesions were firm, sunken, and brown. Isolates of P. infestans were generated from field-infected tomato and potato foliar and fruit tissues collected by the authors and professional crop consultants. In initial pathogen confirmation analysis in 2009, three isolates of P. infestans were generated from one potato plant exhibiting multiple lesions from one of eight fields tested by placing infected leaf excisions onto Rye A agar amended with rifampicin and ampicillin. Axenic, single zoospore-derived cultures of isolates were generated from parent cultures and maintained on Rye A agar for further characterization. In 2010, three US-23 isolates were recovered from three locations (two counties), out of 20 fields tested. Mycelium was coenocytic with hyphal diameter of 5 to 8 μm (n = 50). Sporangia were limoniform or ovoid, semi to fully papillate, caducous, had short pedicels, and were 26.16 μm high × 18.17 μm wide (n = 50). The average length/width ratio was 1.42. Allozyme banding patterns at the glucose-6-phosphate isomerase (Gpi) locus indicated a 100/100 profile, consistent with the US-23 clonal lineage (3) Mating type assays confirmed the isolates to be A1 and in vitro intermediate mefenoxam sensitivity was observed (4). Genomic DNA was extracted with a phenol/chloroform/isoamyl alcohol solution and RFLP analysis was performed using the RG-57 probe on a representative isolate and resulted in banding patterns consistent with US-23 (2,3). The P. infestans clonal lineage US-23 was present in epidemics in 2009 and 2010 in the United States. Disease symptoms associated with US-23 were observed exclusively on potato in 2009 and on tomato in 2010 in Wisconsin. To our knowledge, this is the first report of P. infestans clonal lineage US-23 causing late blight on tomato and potato in Wisconsin and represents a change in the composition of the pathogen population from previous epidemic years. References: (1) K. Deahl. (Abstr.) Phytopathology 100:S161, 2010. (2) S. B. Goodwin et al. Curr. Genet. 22:107, 1992. (3) Hu et al. Plant Dis. 96:1323, 2012. (4) A. C. Seidl and A. J. Gevens. (Abstr.) Phytopathology 101(suppl.):S162, 2011.

Sign in / Sign up

Export Citation Format

Share Document