Asian Soybean Rust Caused by Phakopsora pachyrhizi on Soybean and Kudzu in Florida

2005 ◽  
Vol 6 (1) ◽  
pp. 9 ◽  
Author(s):  
Philip F. Harmon ◽  
M. Timur Momol ◽  
J. J. Marois ◽  
Hank Dankers ◽  
Carrie L. Harmon
Keyword(s):  
Light Microscopy ◽  
Dna Extraction ◽  
Pcr Amplification ◽  
Initial Diagnosis ◽  
Soybean Rust ◽  
Phakopsora Pachyrhizi ◽  
First Report ◽  
Asian Soybean Rust ◽  
Rust Diseases ◽  
Amplification Protocol

Asian soybean rust caused by Phakopsora pachyrhizi was found on soybean and kudzu in Florida in November of 2004. The initial diagnosis of soybean rust was based on observations of symptoms and urediniospores. The two species of Phakopsora that cause rust diseases on soybean, P. pachyrhizi and P. meibomiae, cannot be differentiated with light microscopy. A rapid DNA extraction and PCR amplification protocol discriminated between the two species. The sequence of the amplified DNA product confirmed this first report of P. pachyrhizi in Florida. Accepted for publication 9 May 2005. Published 13 June 2005.

scholarly journals First Report of Asian Soybean Rust Caused by Phakopsora pachyrhizi from Mexico

Plant Disease ◽  
2006 ◽  
Vol 90 (9) ◽  
pp. 1260-1260 ◽  
Author(s):  
A. Cárcamo Rodríguez ◽  
J. Aguilar Rios ◽  
J. R. Hernández
Keyword(s):  
Plant Protection ◽  
Soybean Rust ◽  
Thin Wall ◽  
Phakopsora Pachyrhizi ◽  
First Report ◽  
The North ◽  
San Luis ◽  
Asian Soybean Rust ◽  
Glycine Max L ◽  
Voucher Specimens

Leaves of soybean (Glycine max (L.) Merr.; Fabaceae) cv. Huasteca 400, with conspicuous chlorotic spots and associated hypophyllous cinnamon-brown sori, were collected in commercial soybean plantings in Ébano and Tamuín in the state of San Luis de Potosí, Mexico on 26 October 2005. Uredinia, Malupa-type, are mostly hypophyllous, minute, pulverulent, cinnamon-brown, scattered or in groups, subepidermal becoming erumpent, cone like, surrounded by paraphyses; paraphyses are cylindric to clavate, 25 to 50 × 6 to 14 μm, colorless to yellow brownish with wall thickened at the apex. Urediniospores are obovoid to broadly ellipsoidal, measuring 18 to 37 × 15 to 24 μm, and have a minutely echinulate thin wall, hyaline to pale yellowish brown. This morphology is typical of Phakopsora pachyrhizi Syd. & P. Syd. and P. meibomiae (Arthur) Arthur. DNA was extracted from leaves containing sori with the PureLink Plant DNA Reagent (Invitrogen, Carlsbad, CA), and the identity of P. pachyrhizi was confirmed by the polymerase chain reaction protocol (1) with Ppa1/Ppa2 primers at the National Phytosanitary Reference Center of Mexico. The morphological and molecular diagnosis and presence of P. pachyrhizi in Mexico was officially communicated by the North American Plant Protection Organization (NAPPO) on 16 February 2006. Asian soybean rust was reported for the first time in North America in 2004 (2). To our knowledge, this the first report of P. pachyrhizi in Mexico. Voucher specimens have been placed in the USDA National Fungus Collection as BPI 871130, BPI 871131, and BPI 871132. Images and a complete description of Asian soybean rust can be viewed at http://nt.arsgrin.gov/taxadescriptions/factsheets/index.cfm?thisapp=Phakopsorapachyr hizi . References: (1) R. D. Frederick et al. Phytopathology 92:217, 2002. (2) R. W. Schneider et al. Plant Dis. 89:774, 2005.

scholarly journals First Report of Asian Soybean Rust Caused by Phakopsora pachyrhizi on Kudzu in South Africa

Plant Disease ◽  
2007 ◽  
Vol 91 (10) ◽  
pp. 1364-1364 ◽  
Author(s):  
Z. A. Pretorius ◽  
B. Visser ◽  
P. J. du Preez
Keyword(s):  
South Africa ◽  
Dna Analysis ◽  
Elisa Test ◽  
Soybean Rust ◽  
Phakopsora Pachyrhizi ◽  
Internal Transcribed Spacer Region ◽  
First Report ◽  
Asian Soybean Rust ◽  
Test Kit ◽  
Kwazulu Natal

Asian soybean rust was first reported on soybean in South Africa (SA) in 2001 (3). The disease has occurred in all ensuing seasons, particularly in the humid, eastern production regions, causing significant losses in soybean fields not protected by fungicides. In April 2005, rust-infected Pueraria lobata (kudzu) was detected near Nelspruit, Mpumalanga, SA. At this location (25°20′41″S, 30°43′30″E), kudzu plants occurred abundantly on road sides, edges of pine plantations, and in natural vegetation. Most vines were infected, with abaxial surfaces of older leaves often showing 100% severity. Following inoculation with rust spores collected from kudzu, soybean line PI200492 (Rpp1) produced tan lesions typical of a susceptible reaction for Asian soybean rust. PI230970 (Rpp2), PI462312 (Rpp3), and PI459025 (Rpp4) showed red-brown lesions typical of a resistant reaction. Using Ppm1/Ppa2 and Ppm1/Ppm2 primer combinations, the amplification profiles of the internal transcribed spacer region (1) of rust DNA extracted from primary leaves of line PI200492 infected with spores collected from kudzu positively identified the pathogen as Phakopsora pachyrhizi. The Ppm1/Pme2 primer combination specific for P. meibomiae (1) did not yield an amplification product. The Qualiplate ELISA test kit (EnviroLogix Inc., Portland, ME) verified the identification of P. pachyrhizi on an original kudzu sample as well as the leaf material used for DNA analysis. A survey of kudzu at the Nelspruit site during July 2005 confirmed the presence of the pathogen during the offseason for soybean. At that time, incidence of kudzu rust remained high, but few leaves showed high severity. The susceptibility of kudzu to Asian soybean rust has been reported in controlled infection studies in SA (2). To our knowledge, this is the first report of P. pachyrhizi causing rust on a large, naturally occurring kudzu population in SA. References: (1) R. D. Frederick et al. Phytopathology 92:217, 2002. (2) A. Nunkumar. M.Sc. thesis. University of KwaZulu-Natal, South Africa, 2006. (3) Z. A. Pretorius et al. Plant Dis. 85:1288, 2001.

scholarly journals Asian Soybean Rust: Incidence, Severity, and Morphological Characterization of Phakopsora pachyrhizi (Uredinia and Telia) in Argentina

Plant Disease ◽  
2005 ◽  
Vol 89 (1) ◽  
pp. 109-109 ◽  
Author(s):  
M. A. Carmona ◽  
M. E. Gally ◽  
S. E. Lopez
Keyword(s):  
Morphological Characterization ◽  
Northern Region ◽  
Soybean Rust ◽  
Limited Area ◽  
Growth Stages ◽  
Phakopsora Pachyrhizi ◽  
First Report ◽  
Telial Stage ◽  
Asian Soybean Rust

Asian soybean rust (ASR), caused by Phakopsora pachyrhizi, is the most destructive disease of soybean (Glycine max) in many areas of the world. ASR was first detected in Argentina during 2002 in a limited area in the northern region of the country (2). During the 2004 growing season, P. pachyrhizi spread rapidly throughout most soybean growing areas of northwestern and northeastern Argentina. ASR was also was found in some fields in Entre Ríos and Santa Fe provinces. In all areas, symptoms were expressed late in the 2004 season (growth stages R5.5 to R7) and yield losses were minimal. The objectives of this study were to quantify P. pachyrhizi infection in the canopy and morphologically characterize the fungus from fields where it had been previously detected by polymerase chain reaction (PCR) (3). Incidence (percentage of plants affected) and severity (percentage of leaf area affected, including chlorosis) were visually estimated for 10 plants arbitrarily collected (April 2004) from each of three fields located in Charata (Chacabuco), Chaco Province (Sample 1, collected in the R6 stage), La Paloma (Moreno), Santiago del Estero Province (Sample 2, stage R6 to R7), and Tolloche (Anta), Salta Province (Sample 3, stage R5.5). Disease assessments were made for the lower, middle, and upper canopy from 15 leaves per plant. The number of pustules per cm2 and uredinia per lesion were recorded from the undersides of central leaflets for each trifoliolate observed. Tissue sections were made to observe fructifications of P. pachyrhizi. Incidence of affected plants was 100% in all fields. Disease severity for Sample 1 was 45% (range 30 to 60%), 20% (10 to 30%), and 10% (5 to 20%) for the lower, middle, and upper canopy, respectively; for Sample 2: 60% (30 to 80%), 40% (25 to 50%), and 25% (15 to 40%) for the lower, middle, and upper canopy, respectively; and for Sample 3: 25% (10 to 50%), 15% (10 to 20%), and 10% (5 to 15%) for the lower, middle, and upper canopy, respectively. The number of pustules per cm2 for Sample 1 was 156/cm2 (range 88 to 200); Sample 2: 172/cm2 (128 to 232); and Sample 3: 120/cm2 (72 to 232). The number of uredinia per lesion for Sample 1 was 6 per lesion (range 1 to 15); Sample 2: 5.5 per lesion (1 to 13), and Sample 3: 2.8 per lesion (1 to 5). The two spore types that were commonly observed were urediniospores and teliospores. Telia were found on infected leaves mixed with uredinia in every sample. Urediniospores measured 16 to 22 μm (mean 18.5 μm) × 25 to 30 μm (mean 27 μm). Teliospores measured 8 to 11 μm (mean 9 μm) × 19 to 27 μm (mean 23.8 μm). Spores sizes are in the range described by Ono et al. (1). To our knowledge, this is the first report of epidemiological and morphological characterization of ASR in Argentina and the first report of the telial stage of P. pachyrhizi on soybean in South America. References: (1) Y. Ono et al. Mycol. Res. 96:825, 1992. (2) R. L. Rossi. Plant Dis 87:102, 2003. (3) SINAVIMO, Sistema Nacional Argentino de Vigilancia y Monitoreo de plagas. Roya de la soja: Resultados de la campaña 2003-2004. On-line publication. SENASA, 2004.

scholarly journals First Report of Asian Soybean Rust Caused by Phakopsora pachyrhizi in Puerto Rico

Plant Disease ◽  
2013 ◽  
Vol 97 (10) ◽  
pp. 1378-1378 ◽  
Author(s):  
C. Estévez de Jensen ◽  
C. L. Harmon ◽  
A. Vitoreli
Keyword(s):  
Puerto Rico ◽  
Light Microscope ◽  
Soybean Rust ◽  
Pathogenicity Test ◽  
Phakopsora Pachyrhizi ◽  
Specific Primers ◽  
First Report ◽  
Asian Soybean Rust ◽  
Species Specific ◽  
Pcr Test

Sentinel plots for monitoring Asian soybean rust (ASR) caused by Phakopsora pachyrhizi Syd. were initiated in 2005 at Isabela (EEI), Adjuntas (EEA), and Juana Diaz (EEJD) experiment stations. Until 2009, no signs or symptoms of ASR were observed in soybean (Glycine max [L.] Merr.) or common bean (Phaseolus vulgaris L.). These sites were found to be negative for the occurrence of ASR based on PCR with specific primers Ppa1 and Ppa2 (2). However, P. meibomiae, the cause of American soybean rust (AmSR) endemic to this region, was found in Adjuntas naturally infecting numerous wild and cultivated legumes, particularly Lablab purpureus (3). Symptoms of AmSR in L. purpureus appeared as reddish-brown spots on the underside of the leaves with three to four uredia per lesion. On February 12, 2011, leaf samples of soybean in beginning pod-fill (R5) and beginning-maturity (R8) growth stages were collected in a winter nursery at EEI and found to have small brown specks with chlorotic haloes on the underside of the leaves and leaf sections from symptomatic areas indicated an abundance of uredinia. Under the light microscope, urediniospores observed at 40× were morphologically similar to Phakopsora spp. Total DNA was extracted from leaf discs using the Qiagen DNeasy Plant Mini Kit following the methods of Frederick et al. (2). Detection of ASR pathogen was achieved via PCR amplification with Ppa1 and Ppa2 primers that are specific for P. pachyrhizi Syd. After sequencing the amplicon, BLAST analysis of the internal transcribed spacer (ITS) region of the ribosomal RNA genes indicated 100% identity with known P. pachyrhizi sequences in GenBank. The sequence of isolate P. pachyrhizi EEI-2011 was submitted to GenBank as JX994293. No amplification was observed after PCR with species-specific primers Pme1 and Pme2 specific for P. meibomiae (Arthur) Arthur. L. purpureus collected from EEA and Utuado only appears to be infected by P. meibomiae and no mixed infections with P. pachyrhizi were apparent, based on the PCR test. Leaf samples from EEI were sent to the UF Plant Diagnostic Center in Gainesville, FL, where quantitative PCR with primers Ppa1 and Ppa2 confirmed the presence of P. pachyrhizi; while P. meibomiae was not detected with primers Pme1 and Pme2. Pathogenicity tests were conducted on the soybean cv. Williams with isolate EEI-2011. Fifteen-day-old soybean plants were inoculated by attaching an infected and sporulating 1 cm2 piece of soybean leaf from EEI-2011 with an average of 4.5 × 105 urediniospores per cm2 (1). Inoculated plants were placed in a growth chamber at 20°C night and 28°C day temperatures, 80% humidity, and a 12-h light photoperiod. Small reddish brown spots with chlorotic haloes developed 4 to 6 days after inoculation and tan lesions appeared 10 to 15 days later. Mature tan lesions developed in 2 weeks with an average of 2.4 uredinia/lesion. Urediniospores were observed with light microscope and these were morphologically similar to those spores observed in the original diseased samples. Another PCR test confirmed P. pachyrhizi after amplification with the species-specific primers. The pathogenicity test was repeated twice with the same cultivar. To our knowledge, this is the first report of ASR in Puerto Rico and this finding will have implications as another overwintering site for Asian soybean rust in the Caribbean region. References: (1) C. Estévez de Jensen et al. J. Agric. Univ. P.R. 93:125, 2009. (2) R. D. Frederick et al. Phytopathology 92:217, 2002. (3) B. Vega and C. Estévez de Jensen. J. Agric. Univ. P.R. 94:211, 2010.

scholarly journals First Report of Asian Soybean Rust Caused by Phakopsora pachyrhizi on Soybean in Alabama

Plant Disease ◽  
2006 ◽  
Vol 90 (1) ◽  
pp. 112-112 ◽  
Author(s):  
J. M. Mullen ◽  
E. J. Sikora ◽  
J. M. McKemy ◽  
M. E. Palm ◽  
L. Levy ◽  
...  
Keyword(s):  
United States ◽  
The United States ◽  
Soybean Rust ◽  
Phakopsora Pachyrhizi ◽  
Rust Disease ◽  
First Report ◽  
Leaf Spots ◽  
Asian Soybean Rust ◽  
Leaf Surfaces ◽  
Soybean Leaves

On November 4, 2004, soybean leaves (Glycine max (L.) Merr) were submitted to the Auburn University Plant Diagnostic Lab by a State Department of Agriculture and Industries Inspector. Samples were collected from an 80-ha field of soybean plants in a late-reproductive-growth stage in Mobile County, Alabama. Under microscopic examination, leaves showed rust pustules in advanced stages of development with urediniospores and sori characteristic of Phakopsora spp. Uredinia were ostiolate in small, brown, angular leaf spots (2 to 3 mm) on lower leaf surfaces. Urediniospores were pale yellow-to-white, globose or ovate, 20 to 40 × 15 to 25 μm. In a subsequent visit to the field, symptoms and signs of the rust disease were observed on plants bordering the edge of the field since the majority of plants were senescent. Tan lesions on lower leaf surfaces contained small pustules surrounded by a small zone of slightly discolored necrotic tissue. Masses of tan spores covered the lower leaf surface pustules. Leaves were mailed overnight to the USDA National Identification Services (Mycology) Laboratory in Beltsville, MD. The fungal structures were confirmed to be a Phakopsora sp., and the sample was forwarded to the USDA National Plant Germplasm and Biotechnology Laboratory in Beltsville, MD. DNA was extracted from leaf pieces containing sori using the Qiagen DNeasy Plant Mini kit (Qiagen, Valencia, CA). Phakopsora pachyrhizi was detected using a real-time polymerase chain reaction (PCR) protocol (1) performed in a Cepheid SmartCycler (Sunnyvale, CA). The PCR master mix was modified to include OmniMix beads (Cepheid). The field and microscopic suspect diagnosis of P. pachyrhizi was confirmed officially by APHIS on November 18, 2004. This was the fourth USDA official confirmation of Asian soybean rust in the continental United States during 2004, and to our knowledge, this is the first report of the disease in Alabama. This report helps confirm that early occurrences of Asian soybean rust in the United States were present in other areas in addition to the first reported finding in Louisiana (2). References: (1) R. D. Frederick et al. Phytopathology 92:217, 2002. (2) R. W. Schneider et al. Plant Dis. 89:774, 2005.

scholarly journals Transcriptome analyses and virus induced gene silencing identify genes in the Rpp4-mediated Asian soybean rust resistance pathway

2013 ◽  
Vol 40 (10) ◽  
pp. 1029 ◽  
Author(s):  
Aguida M. A. P. Morales ◽  
Jamie A. O'Rourke ◽  
Martijn van de Mortel ◽  
Katherine T. Scheider ◽  
Timothy J. Bancroft ◽  
...  
Keyword(s):  
Gene Expression ◽  
Transcription Factors ◽  
Gene Silencing ◽  
Differentially Expressed ◽  
Soybean Rust ◽  
Phakopsora Pachyrhizi ◽  
R Gene ◽  
Virus Induced Gene Silencing ◽  
Asian Soybean Rust ◽  
Defence Responses

Rpp4 (Resistance to Phakopsora pachyrhizi 4) confers resistance to Phakopsora pachyrhizi Sydow, the causal agent of Asian soybean rust (ASR). By combining expression profiling and virus induced gene silencing (VIGS), we are developing a genetic framework for Rpp4-mediated resistance. We measured gene expression in mock-inoculated and P. pachyrhizi-infected leaves of resistant soybean accession PI459025B (Rpp4) and the susceptible cultivar (Williams 82) across a 12-day time course. Unexpectedly, two biphasic responses were identified. In the incompatible reaction, genes induced at 12 h after infection (hai) were not differentially expressed at 24 hai, but were induced at 72 hai. In contrast, genes repressed at 12 hai were not differentially expressed from 24 to 144 hai, but were repressed 216 hai and later. To differentiate between basal and resistance-gene (R-gene) mediated defence responses, we compared gene expression in Rpp4-silenced and empty vector-treated PI459025B plants 14 days after infection (dai) with P. pachyrhizi. This identified genes, including transcription factors, whose differential expression is dependent upon Rpp4. To identify differentially expressed genes conserved across multiple P. pachyrhizi resistance pathways, Rpp4 expression datasets were compared with microarray data previously generated for Rpp2 and Rpp3-mediated defence responses. Fourteen transcription factors common to all resistant and susceptible responses were identified, as well as fourteen transcription factors unique to R-gene-mediated resistance responses. These genes are targets for future P. pachyrhizi resistance research.

scholarly journals Resistance to Asian soybean rust in soybean lines with the pyramided three Rpp genes

2013 ◽  
Vol 13 (1) ◽  
pp. 75-82 ◽  
Author(s):  
Naoki Yamanaka ◽  
Noelle G Lemos ◽  
Miori Uno ◽  
Hajime Akamatsu ◽  
Yuichi Yamaoka ◽  
...  
Keyword(s):  
Genetic Background ◽  
Susceptible Variety ◽  
Soybean Rust ◽  
Phakopsora Pachyrhizi ◽  
Soybean Line ◽  
Pathogen Population ◽  
Resistance Level ◽  
Asian Soybean Rust ◽  
High Level

In this study, the influence of genetic background on the resistance level of a soybean line carrying Rpp2, Rpp4, and Rpp5 was evaluated by backcrossing it with a susceptible variety. It was also evaluated eight lines which carry these Rpp genes against five Asian soybean rust (ASR) isolates, in order to determine the likely range of resistance against ASR isolates differing in pathogenicity. The results indicated that a high level of resistance against various ASR isolates could be retained in lines carrying the three Rpp genes in susceptible genetic backgrounds, although minor influences of plant genetic background and ASR pathogenicity to the ASR resistance could occur. Thus, lines with the pyramided three Rpp genes should be effective against a complex pathogen population consisting of diverse Phakopsora pachyrhizi isolates.

scholarly journals Characterization of three soybean landraces resistant to Asian soybean rust disease

2020 ◽  
Vol 40 (6) ◽  
Author(s):  
Luciano Nobuhiro Aoyagi ◽  
Yukie Muraki ◽  
Naoki Yamanaka
Keyword(s):  
Susceptible Variety ◽  
Soybean Rust ◽  
Resistance Locus ◽  
Chromosome 6 ◽  
Phakopsora Pachyrhizi ◽  
Rust Disease ◽  
Asian Soybean Rust ◽  
The World ◽  
Trait Locus

Abstract Phakopsora pachyrhizi is an obligatory biotrophic fungus that causes Asian soybean rust (ASR) disease. ASR control primarily involves chemical control and the use of resistant soybean cultivars carrying an Rpp (resistance to P. pachyrhizi) gene. This study aimed to characterize the ASR resistance of three soybean Asian landraces. By screening the world core collection (WC) of soybean, which consists of 80 varieties, three landraces were identified in Southeast Asia as resistant to ASR. Genetic mapping using the F2 population derived from a cross with an ASR-susceptible variety, BRS 184, indicated that KS 1034 (WC2) has ASR resistance conferred by a single dominant resistance gene, mapped on chromosome 18, in the same region where Rpp1 was mapped previously. The BRS 184 × WC61 (COL/THAI/1986/THAI-80) F2 population, on the other hand, showed an ASR resistance locus mapped by quantitative trait locus analysis on chromosome 6, in the region where the resistance conferred by PI 416764 Rpp3 resides, with a logarithm of the odds score peak at the same position as the marker, Satt079, while the BRS 184 × WC51 (HM 39) population showed the resistance to ASR allocated between Satt079 and Sat_263 markers, also in the region where Rpp3 was mapped previously. Both WC51 and WC61 have the same infection profile as FT-2 and PI 462312 when tested against the same ASR isolate panel. These three WCs can be used in MAS programs for introgression of Rpp1 and Rpp3 and the development of ASR-resistant cultivars in the breeding program.

scholarly journals Models and applications for risk assessment and prediction of Asian soybean rust epidemics

2006 ◽  
Vol 31 (6) ◽  
pp. 533-544 ◽  
Author(s):  
Emerson M. Del Ponte ◽  
Cláudia V. Godoy ◽  
Marcelo G. Canteri ◽  
Erlei M. Reis ◽  
X.B. Yang
Keyword(s):  
Disease Modeling ◽  
Weather Conditions ◽  
Epidemiological Studies ◽  
Soybean Rust ◽  
Phakopsora Pachyrhizi ◽  
Spatial And Temporal Scales ◽  
Asian Soybean Rust ◽  
New Development ◽  
Glycine Max L ◽  
Favorable Weather

Asian rust of soybean [Glycine max (L.) Merril] is one of the most important fungal diseases of this crop worldwide. The recent introduction of Phakopsora pachyrhizi Syd. & P. Syd in the Americas represents a major threat to soybean production in the main growing regions, and significant losses have already been reported. P. pachyrhizi is extremely aggressive under favorable weather conditions, causing rapid plant defoliation. Epidemiological studies, under both controlled and natural environmental conditions, have been done for several decades with the aim of elucidating factors that affect the disease cycle as a basis for disease modeling. The recent spread of Asian soybean rust to major production regions in the world has promoted new development, testing and application of mathematical models to assess the risk and predict the disease. These efforts have included the integration of new data, epidemiological knowledge, statistical methods, and advances in computer simulation to develop models and systems with different spatial and temporal scales, objectives and audience. In this review, we present a comprehensive discussion on the models and systems that have been tested to predict and assess the risk of Asian soybean rust. Limitations, uncertainties and challenges for modelers are also discussed.

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