New techniques of applying multi-wavelength anomalous scattering data

Several different methods of using multi-wavelength anomalous scattering data are described and illustrated by application to the solution of the known protein structure, core streptavidin, for which data at three wavelengths were available. Three of the methods depend on the calculation of Patterson-like functions for which the Fourier coefficients involve combinations of the anomalous structure amplitudes from either two or three wavelengths. Each of these maps should show either vectors between anomalous scatterers or between anomalous scatterers and non-anomalous scatterers. While they do so when ideal data are used, with real data they give little information; it is concluded that these methods are far too sensitive to errors in the data and to the scaling of the data-sets to each other. Another Patterson-type function, the P s function, which uses only single-wavelength data can be made more effective by combining the information from several wavelengths. Two analytical methods are described, called AGREE and ROTATE, both of which were very successfully applied to the core streptavidin data. They are both made more effective by preprocessing the data with a procedure called REVISE which brings a measure of mutual consistency to the data from different wavelengths. The best phases obtained from AGREE lead to a map with a conventional correlation coefficient of 0.549 and this should readily be interpreted in terms of a structural model.

2004 ◽  
Vol 37 (3) ◽  
pp. 498-499 ◽  
Author(s):  
Quan Hao

In single- or multi-wavelength anomalous dispersion (SAD/MAD) phasing, one of the essential steps is to find the absolute configuration (hand) of the anomalous scatterers. A computer program,ABS, based on an algorithm proposed by Woolfson & Yao [Acta Cryst. (1994), D50, 7–10] has been written to determine the absolute configuration by using anomalous scattering data. It also calculates a real-space figure of merit (FOM) that can be used to assess the quality of the solution for anomalous scatterer sites. TheABSprogram has been successfully applied in severalab initiophasing cases, including some previously unknown protein structures. The program is included in theCCP4suite.


2003 ◽  
Vol 36 (6) ◽  
pp. 1397-1401 ◽  
Author(s):  
Jun Wang ◽  
Steven E. Ealick

Sixteen existing single-wavelength/multi-wavelength anomalous diffraction (SAD/MAD) data sets with a broad range of crystallographic properties have been used to investigate the various parameters inSnBwith the goal of finding the optimum values for locating the positions of anomalous scatterers. The results of the analysis indicate some changes in default parameters that may be useful for non-routine and difficult cases.


2021 ◽  
Author(s):  
Jakob Raymaekers ◽  
Peter J. Rousseeuw

AbstractMany real data sets contain numerical features (variables) whose distribution is far from normal (Gaussian). Instead, their distribution is often skewed. In order to handle such data it is customary to preprocess the variables to make them more normal. The Box–Cox and Yeo–Johnson transformations are well-known tools for this. However, the standard maximum likelihood estimator of their transformation parameter is highly sensitive to outliers, and will often try to move outliers inward at the expense of the normality of the central part of the data. We propose a modification of these transformations as well as an estimator of the transformation parameter that is robust to outliers, so the transformed data can be approximately normal in the center and a few outliers may deviate from it. It compares favorably to existing techniques in an extensive simulation study and on real data.


Entropy ◽  
2020 ◽  
Vol 23 (1) ◽  
pp. 62
Author(s):  
Zhengwei Liu ◽  
Fukang Zhu

The thinning operators play an important role in the analysis of integer-valued autoregressive models, and the most widely used is the binomial thinning. Inspired by the theory about extended Pascal triangles, a new thinning operator named extended binomial is introduced, which is a general case of the binomial thinning. Compared to the binomial thinning operator, the extended binomial thinning operator has two parameters and is more flexible in modeling. Based on the proposed operator, a new integer-valued autoregressive model is introduced, which can accurately and flexibly capture the dispersed features of counting time series. Two-step conditional least squares (CLS) estimation is investigated for the innovation-free case and the conditional maximum likelihood estimation is also discussed. We have also obtained the asymptotic property of the two-step CLS estimator. Finally, three overdispersed or underdispersed real data sets are considered to illustrate a superior performance of the proposed model.


Econometrics ◽  
2021 ◽  
Vol 9 (1) ◽  
pp. 10
Author(s):  
Šárka Hudecová ◽  
Marie Hušková ◽  
Simos G. Meintanis

This article considers goodness-of-fit tests for bivariate INAR and bivariate Poisson autoregression models. The test statistics are based on an L2-type distance between two estimators of the probability generating function of the observations: one being entirely nonparametric and the second one being semiparametric computed under the corresponding null hypothesis. The asymptotic distribution of the proposed tests statistics both under the null hypotheses as well as under alternatives is derived and consistency is proved. The case of testing bivariate generalized Poisson autoregression and extension of the methods to dimension higher than two are also discussed. The finite-sample performance of a parametric bootstrap version of the tests is illustrated via a series of Monte Carlo experiments. The article concludes with applications on real data sets and discussion.


2019 ◽  
Vol 15 (S356) ◽  
pp. 280-284
Author(s):  
Angela Bongiorno ◽  
Andrea Travascio

AbstractXDCPJ0044.0-2033 is one of the most massive galaxy cluster at z ∼1.6, for which a wealth of multi-wavelength photometric and spectroscopic data have been collected during the last years. I have reported on the properties of the galaxy members in the very central region (∼ 70kpc × 70kpc) of the cluster, derived through deep HST photometry, SINFONI and KMOS IFU spectroscopy, together with Chandra X-ray, ALMA and JVLA radio data.In the core of the cluster, we have identified two groups of galaxies (Complex A and Complex B), seven of them confirmed to be cluster members, with signatures of ongoing merging. These galaxies show perturbed morphologies and, three of them show signs of AGN activity. In particular, two of them, located at the center of each complex, have been found to host luminous, obscured and highly accreting AGN (λ = 0.4−0.6) exhibiting broad Hα line. Moreover, a third optically obscured type-2 AGN, has been discovered through BPT diagram in Complex A. The AGN at the center of Complex B is detected in X-ray while the other two, and their companions, are spatially related to radio emission. The three AGN provide one of the closest AGN triple at z > 1 revealed so far with a minimum (maximum) projected distance of 10 kpc (40 kpc). The discovery of multiple AGN activity in a highly star-forming region associated to the crowded core of a galaxy cluster at z ∼ 1.6, suggests that these processes have a key role in shaping the nascent Brightest Cluster Galaxy, observed at the center of local clusters. According to our data, all galaxies in the core of XDCPJ0044.0-2033 could form a BCG of M* ∼ 1012Mȯ hosting a BH of 2 × 108−109Mȯ, in a time scale of the order of 2.5 Gyrs.


Information ◽  
2021 ◽  
Vol 12 (5) ◽  
pp. 202
Author(s):  
Louai Alarabi ◽  
Saleh Basalamah ◽  
Abdeltawab Hendawi ◽  
Mohammed Abdalla

The rapid spread of infectious diseases is a major public health problem. Recent developments in fighting these diseases have heightened the need for a contact tracing process. Contact tracing can be considered an ideal method for controlling the transmission of infectious diseases. The result of the contact tracing process is performing diagnostic tests, treating for suspected cases or self-isolation, and then treating for infected persons; this eventually results in limiting the spread of diseases. This paper proposes a technique named TraceAll that traces all contacts exposed to the infected patient and produces a list of these contacts to be considered potentially infected patients. Initially, it considers the infected patient as the querying user and starts to fetch the contacts exposed to him. Secondly, it obtains all the trajectories that belong to the objects moved nearby the querying user. Next, it investigates these trajectories by considering the social distance and exposure period to identify if these objects have become infected or not. The experimental evaluation of the proposed technique with real data sets illustrates the effectiveness of this solution. Comparative analysis experiments confirm that TraceAll outperforms baseline methods by 40% regarding the efficiency of answering contact tracing queries.


2021 ◽  
Vol 10 (8) ◽  
pp. 294
Author(s):  
Laura Cervi ◽  
Fernando García ◽  
Carles Marín Lladó

During a global pandemic, the great impact of populist discourse on the construction of social reality is undeniable. This study analyzes the fantasmatic dimension of political discourse from Donald Trump’s and Jair Bolsonaro’s Twitter accounts between 1 March and 31 May. To do so, it applies a Clause-Based Semantic Text Analysis (CBSTA) methodology that categorizes speech in Subject-Verb-Object (SVO) triplets. The study findings show that in spite of the Coronavirus pandemic, the main beatific and horrific subjects remain the core populist signifiers: the people and the elite. While Bolsonaro’s narrative was predominantly beatific, centered on the government, Trump’s was mostly horrific, centered on the elite. Trump signified the pandemic as a subject and an enemy to be defeated, whereas Bolsonaro portrayed it as a circumstance. Finally, both leaders defined the people as working people, therefore their concerns about the pandemic were focused on the people’s ability to work.


Symmetry ◽  
2021 ◽  
Vol 13 (3) ◽  
pp. 474
Author(s):  
Abdulhakim A. Al-Babtain ◽  
Ibrahim Elbatal ◽  
Hazem Al-Mofleh ◽  
Ahmed M. Gemeay ◽  
Ahmed Z. Afify ◽  
...  

In this paper, we introduce a new flexible generator of continuous distributions called the transmuted Burr X-G (TBX-G) family to extend and increase the flexibility of the Burr X generator. The general statistical properties of the TBX-G family are calculated. One special sub-model, TBX-exponential distribution, is studied in detail. We discuss eight estimation approaches to estimating the TBX-exponential parameters, and numerical simulations are conducted to compare the suggested approaches based on partial and overall ranks. Based on our study, the Anderson–Darling estimators are recommended to estimate the TBX-exponential parameters. Using two skewed real data sets from the engineering sciences, we illustrate the importance and flexibility of the TBX-exponential model compared with other existing competing distributions.


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