scholarly journals Testing limits to adaptation along altitudinal gradients in rainforest Drosophila

2009 ◽  
Vol 276 (1661) ◽  
pp. 1507-1515 ◽  
Author(s):  
Jon R Bridle ◽  
Sedef Gavaz ◽  
W. Jason Kennington
Keyword(s):  
Gene Flow ◽  
Genetic Variance ◽  
Local Density ◽  
Theoretical Models ◽  
Rate Of Change ◽  
Adaptive Divergence ◽  
Local Optimum ◽  
Response To Selection ◽  
Costs And Benefits ◽  
The One

Given that evolution can generate rapid and dramatic shifts in the ecological tolerance of a species, what prevents populations adapting to expand into new habitat at the edge of their distributions? Recent population genetic models have focused on the relative costs and benefits of migration between populations. On the one hand, migration may limit adaptive divergence by preventing local populations from matching their local selective optima. On the other hand, migration may also contribute to the genetic variance necessary to allow populations to track these changing optima. Empirical evidence for these contrasting effects of gene flow in natural situations are lacking, largely because it remains difficult to acquire. Here, we develop a way to explore theoretical models by estimating genetic divergence in traits that confer stress resistance along similar ecological gradients in rainforest Drosophila . This approach allows testing for the coupling of clinal divergence with local density, and the effects of genetic variance and the rate of change of the optimum on the response to selection. In support of a swamping effect of migration on phenotypic divergence, our data show no evidence for a cline in stress-related traits where the altitudinal gradient is steep, but significant clinal divergence where it is shallow. However, where clinal divergence is detected, sites showing trait means closer to the presumed local optimum have more genetic variation than sites with trait means distant from their local optimum. This pattern suggests that gene flow also aids a sustained response to selection.

Measurement of fleece wettability in sheep and its relationship to susceptibility to fleece rot and blowfly strike

1982 ◽  
Vol 33 (1) ◽  
pp. 141 ◽  
Author(s):  
L Pascoe
Keyword(s):  
Genetic Variance ◽  
Additive Genetic Variance ◽  
Genetic Correlations ◽  
Economic Importance ◽  
Correlated Response ◽  
Response To Selection ◽  
Significant Incidence ◽  
The Mean ◽  
Selection For ◽  
The One

Fleece wettability in sheep is a character believed to be related to susceptibility to fleece rot and blowfly strike. The present study was undertaken to investigate that hypothesis and to assess wettability as a possible character for a selection program. Wool samples were taken from two flocks which had been subject to selection for wool quality and resistance to fleece rot and a third flock which was unselected. The wettabilities of about 800 samples were determined. The results were found to be repeatable and the technique was capable of distinguishing between sheep. Some problems of measurement are discussed. In the one flock with a significant incidence of fleece rot, susceptibility to fleece rot was found to be associated with higher wettabilities. The mean wettability and the variance were found to be significantly higher in the unselected flock than in the two selected flocks. The heritability of wettability was estimated in the two selected flocks and was found to be low. It is argued that there is likely to be more additive genetic variance in the unselected flock and that the observed difference in wettability was due to a correlated response to selection for resistance to fleece rot. It is considered that further work on the heritability of wettability and its genetic correlations with other characters of economic importance could be fruitful.

A Relativistic Newtonian Mechanics Predicts with Precision the Results of Recent Neutrino-Velocity Experiments

2014 ◽  
Vol 6 (1) ◽  
pp. 1032-1035 ◽  
Author(s):  
Ramzi Suleiman
Keyword(s):  
Null Hypothesis ◽  
Experimental Studies ◽  
Theoretical Models ◽  
Newtonian Mechanics ◽  
Speed Of Light ◽  
Symmetry Principle ◽  
Proposed Model ◽  
Significant Difference ◽  
The One ◽  
Complete Collapse

The research on quasi-luminal neutrinos has sparked several experimental studies for testing the "speed of light limit" hypothesis. Until today, the overall evidence favors the "null" hypothesis, stating that there is no significant difference between the observed velocities of light and neutrinos. Despite numerous theoretical models proposed to explain the neutrinos behavior, no attempt has been undertaken to predict the experimentally produced results. This paper presents a simple novel extension of Newton's mechanics to the domain of relativistic velocities. For a typical neutrino-velocity experiment, the proposed model is utilized to derive a general expression for . Comparison of the model's prediction with results of six neutrino-velocity experiments, conducted by five collaborations, reveals that the model predicts all the reported results with striking accuracy. Because in the proposed model, the direction of the neutrino flight matters, the model's impressive success in accounting for all the tested data, indicates a complete collapse of the Lorentz symmetry principle in situation involving quasi-luminal particles, moving in two opposite directions. This conclusion is support by previous findings, showing that an identical Sagnac effect to the one documented for radial motion, occurs also in linear motion.

The Problem of the Typology of Rationality in Muslim Culture

2019 ◽  
Vol 62 (6) ◽  
pp. 88-99
Author(s):  
Andrey A. Lukashev
Keyword(s):  
Modern Philosophy ◽  
Theoretical Basis ◽  
Theoretical Models ◽  
The Other ◽  
Common Denominator ◽  
Islamic Culture ◽  
The Common ◽  
Per Se ◽  
The One ◽  
Muslim Culture

The typology of rationality is one of major issues of modern philosophy. In an attempt to provide a typology to Oriental materials, a researcher faces additional problems. The diversity of the Orient as such poses a major challenge. When we say “Oriental,” we mean several cultures for which we cannot find a common denominator. The concept of “Orient” involves Arabic, Indian, Chinese, Turkish and other cultures, and the only thing they share is that they are “non-Western.” Moreover, even if we focus just on Islamic culture and look into rationality in this context, we have to deal with a conglomerate of various trends, which does not let us define, with full confidence, a common theoretical basis and treat them as a unity. Nevertheless, we have to go on trying to find common directions in thought development, so as to draw conclusions about types of rationality possible in Islamic culture. A basis for such a typology of rationality in the context of the Islamic world was recently suggested in A.V. Smirnov’s logic of sense theory. However, actual empiric material cannot always fit theoretical models, and the cases that do not fit the common scheme are interesting per se. On the one hand, examination of such cases gives an opportunity to specify certain provisions of the theory and, on the other hand, to define the limits of its applicability.

scholarly journals The Concept of Accuracy Analysis of the Vertical Displacements Gained from the Hydrostatic Levelling Systems’ Measurements

Sensors ◽  
2021 ◽  
Vol 21 (14) ◽  
pp. 4842
Author(s):  
Waldemar Kamiński
Keyword(s):  
Accuracy Assessment ◽  
Theoretical Models ◽  
Vertical Displacement ◽  
Serial Connection ◽  
Vertical Displacements ◽  
Comprehensive Determination ◽  
The One ◽  
The Individual ◽  
Reference Sensor

Nowadays, hydrostatic levelling is a widely used method for the vertical displacements’ determinations of objects such as bridges, viaducts, wharfs, tunnels, high buildings, historical buildings, special engineering objects (e.g., synchrotron), sports and entertainment halls. The measurements’ sensors implemented in the hydrostatic levelling systems (HLSs) consist of the reference sensor (RS) and sensors located on the controlled points (CPs). The reference sensor is the one that is placed at the point that (in theoretical assumptions) is not a subject to vertical displacements and the displacements of controlled points are determined according to its height. The hydrostatic levelling rule comes from the Bernoulli’s law. While using the Bernoulli’s principle in hydrostatic levelling, the following components have to be taken into account: atmospheric pressure, force of gravity, density of liquid used in sensors places at CPs. The parameters mentioned above are determined with some mean errors that influence on the accuracy assessment of vertical displacements. In the subject’s literature, there are some works describing the individual accuracy analyses of the components mentioned above. In this paper, the author proposes the concept of comprehensive determination of mean error of vertical displacement (of each CPs), calculated from the mean errors’ values of components dedicated for specific HLS. The formulas of covariances’ matrix were derived and they enable to make the accuracy assessment of the calculations’ results. The author also presented the subject of modelling of vertical displacements’ gained values. The dependences, enabling to conduct the statistic tests of received model’s parameters, were implemented. The conducted tests make it possible to verify the correctness of used theoretical models of the examined object treated as the rigid body. The practical analyses were conducted for two simulated variants of sensors’ connections in HLS. Variant no. I is the sensors’ serial connection. Variant no. II relies on the connection of each CPs with the reference sensor. The calculations’ results show that more detailed value estimations of the vertical displacements can be obtained using variant no. II.

Opinion Dynamics Optimization by Varying Susceptibility to Persuasion via Non-Convex Local Search

2021 ◽  
Vol 16 (2) ◽  
pp. 1-34
Author(s):  
Rediet Abebe ◽  
T.-H. HUBERT Chan ◽  
Jon Kleinberg ◽  
Zhibin Liang ◽  
David Parkes ◽  
...  
Keyword(s):  
Local Search ◽  
Objective Function ◽  
Iterative Process ◽  
Large Scale ◽  
Opinion Dynamics ◽  
Theoretical Models ◽  
Global Optimum ◽  
Local Optimum ◽  
Opinion Formation ◽  
Long Line

A long line of work in social psychology has studied variations in people’s susceptibility to persuasion—the extent to which they are willing to modify their opinions on a topic. This body of literature suggests an interesting perspective on theoretical models of opinion formation by interacting parties in a network: in addition to considering interventions that directly modify people’s intrinsic opinions, it is also natural to consider interventions that modify people’s susceptibility to persuasion. In this work, motivated by this fact, we propose an influence optimization problem. Specifically, we adopt a popular model for social opinion dynamics, where each agent has some fixed innate opinion, and a resistance that measures the importance it places on its innate opinion; agents influence one another’s opinions through an iterative process. Under certain conditions, this iterative process converges to some equilibrium opinion vector. For the unbudgeted variant of the problem, the goal is to modify the resistance of any number of agents (within some given range) such that the sum of the equilibrium opinions is minimized; for the budgeted variant, in addition the algorithm is given upfront a restriction on the number of agents whose resistance may be modified. We prove that the objective function is in general non-convex. Hence, formulating the problem as a convex program as in an early version of this work (Abebe et al., KDD’18) might have potential correctness issues. We instead analyze the structure of the objective function, and show that any local optimum is also a global optimum, which is somehow surprising as the objective function might not be convex. Furthermore, we combine the iterative process and the local search paradigm to design very efficient algorithms that can solve the unbudgeted variant of the problem optimally on large-scale graphs containing millions of nodes. Finally, we propose and evaluate experimentally a family of heuristics for the budgeted variant of the problem.

scholarly journals Adaptive Divergence under Gene Flow along an Environmental Gradient in Two Coexisting Stickleback Species

Genes ◽  
2021 ◽  
Vol 12 (3) ◽  
pp. 435
Author(s):  
Thijs M. P. Bal ◽  
Alejandro Llanos-Garrido ◽  
Anurag Chaturvedi ◽  
Io Verdonck ◽  
Bart Hellemans ◽  
...  
Keyword(s):  
Gene Flow ◽  
Brackish Water ◽  
Environmental Gradient ◽  
Spatial Scales ◽  
Morphological Differentiation ◽  
Genotyping By Sequencing ◽  
Adaptive Divergence ◽  
Linkage Groups ◽  
Closely Related Species ◽  
Genomic Patterns

There is a general and solid theoretical framework to explain how the interplay between natural selection and gene flow affects local adaptation. Yet, to what extent coexisting closely related species evolve collectively or show distinctive evolutionary responses remains a fundamental question. To address this, we studied the population genetic structure and morphological differentiation of sympatric three-spined and nine-spined stickleback. We conducted genotyping-by-sequencing and morphological trait characterisation using 24 individuals of each species from four lowland brackish water (LBW), four lowland freshwater (LFW) and three upland freshwater (UFW) sites in Belgium and the Netherlands. This combination of sites allowed us to contrast populations from isolated but environmentally similar locations (LFW vs. UFW), isolated but environmentally heterogeneous locations (LBW vs. UFW), and well-connected but environmentally heterogenous locations (LBW vs. LFW). Overall, both species showed comparable levels of genetic diversity and neutral genetic differentiation. However, for all three spatial scales, signatures of morphological and genomic adaptive divergence were substantially stronger among populations of the three-spined stickleback than among populations of the nine-spined stickleback. Furthermore, most outlier SNPs in the two species were associated with local freshwater sites. The few outlier SNPs that were associated with the split between brackish water and freshwater populations were located on one linkage group in three-spined stickleback and two linkage groups in nine-spined stickleback. We conclude that while both species show congruent evolutionary and genomic patterns of divergent selection, both species differ in the magnitude of their response to selection regardless of the geographical and environmental context.

scholarly journals Selection Response in Finite Populations

Genetics ◽  
1996 ◽  
Vol 144 (4) ◽  
pp. 1961-1974 ◽  
Author(s):  
Ming Wei ◽  
Armando Caballero ◽  
William G Hill
Keyword(s):  
Linkage Disequilibrium ◽  
Inbreeding Depression ◽  
Genetic Variance ◽  
Relative Rate ◽  
Selection Response ◽  
Rate Of Change ◽  
Effective Population ◽  
Short Term ◽  
Model Account

Formulae were derived to predict genetic response under various selection schemes assuming an infinitesimal model. Account was taken of genetic drift, gametic (linkage) disequilibrium (Bulmer effect), inbreeding depression, common environmental variance, and both initial segregating variance within families (σAW02) and mutational (σM2) variance. The cumulative response to selection until generation t(CRt) can be approximated asCRt≈R0[t−β(1−σAW∞2σAW02)t24Ne]−Dt2Ne,where Ne is the effective population size, σAW∞2=NeσM2 is the genetic variance within families at the steady state (or one-half the genic variance, which is unaffected by selection), and D is the inbreeding depression per unit of inbreeding. R  0 is the selection response at generation 0 assuming preselection so that the linkage disequilibrium effect has stabilized. β is the derivative of the logarithm of the asymptotic response with respect to the logarithm of the within-family genetic variance, i.e., their relative rate of change. R  0 is the major determinant of the short term selection response, but σM2, Ne and β are also important for the long term. A selection method of high accuracy using family information gives a small Ne and will lead to a larger response in the short term and a smaller response in the long term, utilizing mutation less efficiently.

scholarly journals Small-Scale Spectrum of a Scalar Field in Water: The Batchelor and Kraichnan Models

2011 ◽  
Vol 41 (11) ◽  
pp. 2155-2167 ◽  
Author(s):  
Xavier Sanchez ◽  
Elena Roget ◽  
Jesus Planella ◽  
Francesc Forcat
Keyword(s):  
Scalar Field ◽  
Thermal Gradient ◽  
Theoretical Models ◽  
Measured Data ◽  
Small Scale ◽  
Temperature Profiles ◽  
One Dimensional ◽  
Kraichnan Model ◽  
The One ◽  
Rate Of Dissipation

Abstract The theoretical models of Batchelor and Kraichnan, which account for the smallest scales of a scalar field passively advected by a turbulent fluid (Prandtl > 1), have been validated using shear and temperature profiles measured with a microstructure profiler in a lake. The value of the rate of dissipation of turbulent kinetic energy ɛ has been computed by fitting the shear spectra to the Panchev and Kesich theoretical model and the one-dimensional spectra of the temperature gradient, once ɛ is known, to the Batchelor and Kraichnan models and from it determining the value of the turbulent parameter q. The goodness of the fit between the spectra corresponding to these models and the measured data shows a very clear dependence on the degree of isotropy, which is estimated by the Cox number. The Kraichnan model adjusts better to the measured data than the Batchelor model, and the values of the turbulent parameter that better fit the experimental data are qB = 4.4 ± 0.8 and qK = 7.9 ± 2.5 for Batchelor and Kraichnan, respectively, when Cox ≥ 50. Once the turbulent parameter is fixed, a comparison of the value of ɛ determined from fitting the thermal gradient spectra to the value obtained after fitting the shear spectra shows that the Kraichnan model gives a very good estimate of the dissipation, which the Batchelor model underestimates.

scholarly journals Ecological Divergence and the Origins of Intrinsic Postmating Isolation with Gene Flow

2011 ◽  
Vol 2011 ◽  
pp. 1-15 ◽  
Author(s):  
Aneil F. Agrawal ◽  
Jeffrey L. Feder ◽  
Patrik Nosil
Keyword(s):  
Linkage Disequilibrium ◽  
Gene Flow ◽  
Natural Selection ◽  
Theoretical Models ◽  
Ecological Speciation ◽  
Divergent Selection ◽  
Postmating Isolation ◽  
Divergent Natural Selection ◽  
Mathematical Exploration ◽  
Neutral Gene

The evolution of intrinsic postmating isolation has received much attention, both historically and in recent studies of speciation genes. Intrinsic isolation often stems from between-locus genetic incompatibilities, where alleles that function well within species are incompatible with one another when brought together in the genome of a hybrid. It can be difficult for such incompatibilities to originate when populations diverge with gene flow, because deleterious genotypic combinations will be created and then purged by selection. However, it has been argued that if genes underlying incompatibilities are themselves subject to divergent selection, then they might overcome gene flow to diverge between populations, resulting in the origin of incompatibilities. Nonetheless, there has been little explicit mathematical exploration of such scenarios for the origin of intrinsic incompatibilities during ecological speciation with gene flow. Here we explore theoretical models for the origin of intrinsic isolation where genes subject to divergent natural selection also affect intrinsic isolation, either directly or via linkage disequilibrium with other loci. Such genes indeed overcome gene flow, diverge between populations, and thus result in the evolution of intrinsic isolation. We also examine barriers to neutral gene flow. Surprisingly, we find that intrinsic isolation sometimes weakens this barrier, by impeding differentiation via ecologically based divergent selection.

Habitat differentiation between estuarine and inland Hibiscus tiliaceus L. (Malvaceae) as revealed by retrotransposon-based SSAP marker

2011 ◽  
Vol 59 (6) ◽  
pp. 515 ◽  
Author(s):  
Tian Tang ◽  
Lian He ◽  
Feng Peng ◽  
Suhua Shi
Keyword(s):  
Genetic Variation ◽  
Gene Flow ◽  
Genetic Distance ◽  
Genetic Variance ◽  
Genetic Relationships ◽  
Principal Coordinate Analysis ◽  
Geographical Isolation ◽  
Tidal Zone ◽  
Ecological Scale ◽  
Habitat Differentiation

Hibiscus tiliaceus L. (Malvaceae) is a pantropical coastal tree that extends to the tidal zone. In this study, the retrotransposon sequence-specific amplified polymorphism (SSAP) technique was used in order to understand the genetic variation between four population pairs of H. tiliaceus from repeated estuarine and inland habitat contrasts in China. The estuarine populations were consistently more genetic variable compared with the inland ones, which may be attributed to extensive gene flow via water-drifted seeds and/or retrotransposon activation in stressful estuarine environments. An AMOVA revealed that 8.9% of the genetic variance could be explained by the habitat divergence within site, as compared with only 4.9% to geographical isolation between sites, which indicates significant habitat differentiation between the estuarine and inland populations. The estuarine populations were less differentiated (ΦST = 0.115) than the inland (ΦST = 0.152) implying frequent gene interchange in the former. Accordingly, the principal coordinate analysis of genetic distance between individuals revealed that genetic relationships are not fully consistent with the geographic association. These results suggest that despite substantial gene flow via sea-drifted seeds, habitat-related divergent selection could be one of the primary mechanisms that drive habitat differentiation in H. tiliaceus at a local ecological scale.

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