scholarly journals Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana

2016 ◽  
Author(s):  
Frederic Bouche ◽  
Maria D'Aloia ◽  
Pierre Tocquin ◽  
Guillaume Lobet ◽  
Nathalie Detry ◽  
...  
Keyword(s):  
Flowering Time ◽  
Regulatory Elements ◽  
Molecular Data ◽  
Differentially Expressed ◽  
Systemic Signaling ◽  
Carbon Supply ◽  
Clock Gene Expression ◽  
Whole Plant ◽  
Plant Level ◽  
Root Tissues

Molecular data concerning the involvement of the roots in the genetic pathways regulating floral transition are lacking. In this study, we performed global analyses of root transcriptome in Arabidopsis in order to identify flowering time genes that are expressed in the roots and genes that are differentially expressed in the roots during the induction of flowering. Data mining of public microarray experiments uncovered that about 200 genes whose mutation was reported to alter flowering time are expressed in the roots but only few flowering integrators were found. Transcriptomic analysis of the roots during synchronized induction of flowering by a single 22-h long day revealed that 595 genes were differentially expressed. A delay in clock gene expression was observed upon extension of the photoperiod. Enrichment analyses of differentially expressed genes in root tissues, gene ontology categories and cis-regulatory elements converged towards sugar signaling. We inferred that roots are integrated in systemic signaling whereby carbon supply coordinates growth at the whole plant level during the induction of flowering.

A Pro106to Ala Substitution is Associated with Resistance to Glyphosate in Annual Bluegrass (Poa annua)

Weed Science ◽  
2015 ◽  
Vol 63 (3) ◽  
pp. 613-622 ◽  
Author(s):  
Robert B. Cross ◽  
Lambert B. McCarty ◽  
Nishanth Tharayil ◽  
J. Scott McElroy ◽  
Shu Chen ◽  
...  
Keyword(s):  
South Carolina ◽  
Warm Season ◽  
Glyphosate Resistance ◽  
Golf Course ◽  
Epsp Synthase ◽  
Annual Bluegrass ◽  
Whole Plant ◽  
Treated Leaf ◽  
Plant Level ◽  
Root Tissues

Glyphosate is used in the transition zone to control annual bluegrass in fully dormant warm-season grasses. A suspected resistant (R) biotype of annual bluegrass was identified on a golf course in South Carolina after at least 10 consecutive years of glyphosate application. Greenhouse bioassays revealed the R biotype was 4.4-fold resistant to glyphosate compared with a standard susceptible (S) biotype. Further studies were conducted to investigate the mechanism conferring glyphosate resistance in the R biotype. Leaf discs of both biotypes accumulated shikimate in response to increasing glyphosate concentration, but the glyphosate concentration resulting in 50% EPSP synthase inhibition as a result of shikimate accumulation (I50) was 4.2-fold higher in the R biotype compared with the S biotype. At the whole plant level, similar levels of shikimate accumulation were observed between biotypes at 6 and 24 h after treatment (HAT) with glyphosate, but greater shikimate accumulation occurred in the S biotype at 72, 120, and 168 HAT. Shikimate levels decreased in the R biotype after 72 HAT. There were no differences in14C-glyphosate absorption between biotypes. However, more14C-glyphosate translocated out of the treated leaf in the R biotype and into root tissues over time compared with the S biotype. Partial sequencing of the EPSP synthase gene revealed a point mutation that resulted in an Ala substitution at Pro106. Although other mechanisms may contribute to glyphosate resistance, these results confirm a Pro106to Ala substitution is associated with resistance to glyphosate in the R annual bluegrass biotype.

scholarly journals Characterization and Expression of KT/HAK/KUP Transporter Family Genes in Willow under Potassium Deficiency, Drought, and Salt Stresses

2020 ◽  
Vol 2020 ◽  
pp. 1-12 ◽  
Author(s):  
Meixia Liang ◽  
Yachao Gao ◽  
Tingting Mao ◽  
Xiaoyan Zhang ◽  
Shaoying Zhang ◽  
...  
Keyword(s):  
Salt Stress ◽  
Molecular Mechanisms ◽  
Functional Characterization ◽  
Regulatory Elements ◽  
Forest Trees ◽  
Transporter Family ◽  
Whole Plant ◽  
Drought And Salt Stress ◽  
Drought And Salt Stresses ◽  
Plant Level

The K+ transporter/high-affinity K+/K+ uptake (KT/HAK/KUP) transporters dominate K+ uptake, transport, and allocation that play a pivotal role in mineral homeostasis and plant adaptation to adverse abiotic stresses. However, molecular mechanisms towards K+ nutrition in forest trees are extremely rare, especially in willow. In this study, we identified 22 KT/HAK/KUP transporter genes in purple osier willow (designated as SpuHAK1 to SpuHAK22) and examined their expression under K+ deficiency, drought, and salt stress conditions. Both transcriptomic and quantitative real-time PCR (qRT-PCR) analyses demonstrated that SpuHAKs were predominantly expressed in stems, and the expression levels of SpuHAK1, SpuHAK2, SpuHAK3, SpuHAK7, and SpuHAK8 were higher at the whole plant level, whereas SpuHAK9, SpuHAK11, SpuHAK20, and SpuHAK22 were hardly detected in tested tissues. In addition, both K+ deficiency and salt stress decreased the tissue K+ content, while drought increased the tissue K+ content in purple osier plant. Moreover, SpuHAK genes were differentially responsive to K+ deficiency, drought, and salt stresses in roots. K+ deficiency and salt stress mainly enhanced the expression level of responsive SpuHAK genes. Fifteen putative cis-acting regulatory elements, including the stress response, hormone response, circadian regulation, and nutrition and development, were identified in the promoter region of SpuHAK genes. Our findings provide a foundation for further functional characterization of KT/HAK/KUP transporters in forest trees and may be useful for breeding willow rootstocks that utilize potassium more efficiently.

Systemic control of nodule formation by the plant N demand requires autoregulation dependent and independent mechanisms

2021 ◽  
Author(s):  
Marjorie Pervent ◽  
Ilana Lambert ◽  
Marc Tauzin ◽  
Alicia Karouani ◽  
Martha Nigg ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Nodule Formation ◽  
Atmospheric Nitrogen ◽  
Plant Nitrogen ◽  
Systemic Signaling ◽  
Systemic Control ◽  
Whole Plant ◽  
Strong Control ◽  
Mutant Genes ◽  
N Demand

Abstract In legumes interacting with rhizobia the formation of symbiotic organs involved in the acquisition of atmospheric nitrogen is depending of the plant nitrogen (N) demand. We used Medicago truncatula plants cultivated in split-root systems to discriminate between responses to local and systemic N signalings. We evidenced a strong control of nodule formation by systemic N-signaling but obtained no clear evidence of a local control by mineral nitrogen. Systemic signaling of the plant N demand controls numerous transcripts involved in the root transcriptome reprogramming associated to early rhizobia interaction and nodule formation. SUNN has an important role in this control but major systemic N signaling responses remained active in the sunn mutant. Genes involved in the activation of nitrogen fixation are regulated by systemic N signaling in the mutant, explaining why the hypernodulation phenotype is not associated to a higher nitrogen fixation of the whole plant. The control of the transcriptome reprogramming of nodule formation by systemic N signaling requires other pathway(s) that parallel the SUNN/CLE pathway.

Common Cocklebur (Xanthium strumarium) Resistance to Selected ALS-Inhibiting Herbicides

1997 ◽  
Vol 11 (2) ◽  
pp. 241-247 ◽  
Author(s):  
Christy L. Sprague ◽  
Edward W. Stoller ◽  
Loyd M. Wax
Keyword(s):  
Acetolactate Synthase ◽  
Cross Resistance ◽  
Xanthium Strumarium ◽  
Laboratory Studies ◽  
Whole Plant ◽  
Plant Level

Five biotypes of common cocklebur that were not controlled with acetolactate synthase (ALS)-inhibiting herbicides were tested in greenhouse and laboratory studies to determine the magnitude of resistance and cross-resistance to four ALS-inhibiting herbicides. In vivo inhibition of ALS was also evaluated. Based on phytotoxicity, all five ALS-resistant biotypes of common cocklebur were > 390 times more resistant than the susceptible biotype to imazethapyr. However, only four of these biotypes were also resistant to another imidazolinone, imazaquin. Two biotypes were cross-resistant to the sulfonylurea, chlorimuron, and the triazolopyrimidine sulfonanilide, NAF-75. One biotype demonstrated intermediate susceptibility to imazaquin, chlorimuron, and NAF-75. In all cases, the resistance exhibited at the whole plant level was associated with an insensitive ALS.

Sucrose Transporter Gene AtSUC4 Responds to Drought Stress by Regulating the Sucrose Distribution and Metabolism in Arabidopsis thaliana

2013 ◽  
Vol 765-767 ◽  
pp. 2971-2975 ◽  
Author(s):  
Xue Gong ◽  
Ming Li Liu ◽  
Li Jun Zhang ◽  
Wei Liu ◽  
Che Wang
Keyword(s):  
Arabidopsis Thaliana ◽  
Drought Stress ◽  
Plant Stress ◽  
Homozygous Mutation ◽  
Transporter Gene ◽  
Wild Type ◽  
Sucrose Transporters ◽  
Whole Plant ◽  
Plant Stress Tolerance ◽  
Plant Level

Sucrose transporters (SUCs or SUTs) are considered as the important carriers and responsible for the loading, unloading and distribution of sucrose, but at present there is no report that SUCs are involved in sucrose distribution and metabolism under drought stress at the whole-plant level. AtSUC4, as the unique member of SUT4-clade inArabidopsis thaliana, may be important for plant stress tolerance. Here, by analyzing two homozygous mutation lines ofAtSUC4(Atsuc4-1andAtsuc4-2), we found drought stress induced higher sucrose, lower fructose and glucose contents in shoots, and lower sucrose, higher fructose and glucose contents in roots of these mutants compared with the wild-type (WT), leading to an imbalance of sucrose distribution, fructose and glucose (sucrose metabolites) accumulation changes at the whole-plant level. Thus we believe thatAtSUC4regulates sucrose distribution and metabolism in response to drought stress.

scholarly journals New insight into how thigmomorphogenesis affects Epipremnum aureum plant development

2018 ◽  
Vol 36 (3) ◽  
pp. 330-340 ◽  
Author(s):  
Adalberto Di Benedetto ◽  
Claudio Galmarini ◽  
Jorge Tognetti
Keyword(s):  
Growth Promotion ◽  
Rooted Cuttings ◽  
Climbing Plants ◽  
Combination Treatments ◽  
Run Off ◽  
Whole Plant ◽  
Epipremnum Aureum ◽  
Negative Effect ◽  
Net Assimilation ◽  
Plant Level

ABSTRACT Climbing Epipremnum aureum plants develop larger leaves than unsupported, hanging plants. This effect may be regarded, in part, as a thigmomorphogenic response, but gravimorphogenetic effect may also be involved, since polar auxin transport is known to be negatively affected in plants with horizontal or hanging stems, which may result in an altered hormone balance at the whole plant level. The present work was aimed at studying how exogenous auxins and cytokinins may influence growth of E. aureum rooted cuttings under different training systems. Rooted cuttings of E. aureum were cultivated either climbing on an upright wooden board or creeping on the glasshouse bench or hanging from a basket. All leaves of each plant were sprayed to run-off at sunset with four indole-3-acetic acid (IAA) doses 7 days after transplanting and one week later, with four benzylaminopurine (BAP) concentrations, rendering 16 hormone combination treatments. The application of IAA or BAP at 50 mg L-1 to creeping and hanging plants significantly promoted growth but, in climbing plants, a negative effect was generally observed. Changes in net assimilation and photosynthetic rates, together with modified allometric coefficients, accounted for these responses. The higher growth promotion by exogenous growth regulators observed in creeping or hanging plants compared to climbing plants, may be interpreted mostly as a gravimorphogenetic response.

scholarly journals Long-non Coding RNAs Related to Fat Deposition in Pigs Included lncRNA Corresponding to Human MALAT1

2021 ◽  
Author(s):  
Katarzyna Piórkowska ◽  
Kacper Żukowski ◽  
Katarzyna Ropka-Molik ◽  
Mirosław Tyra
Keyword(s):  
Regulatory Elements ◽  
Fat Deposition ◽  
Differentially Expressed ◽  
Rna Molecules ◽  
Non Coding Rna ◽  
Sequencing Method ◽  
Non Coding Rnas ◽  
Potential Interactions ◽  
Long Non Coding Rna ◽  
Generation Sequencing

Obesity is a problem in the last decades since the development of different technologies forced the submission of a faster pace of life, resulting in nutrition style changes. In turn, domestic pigs are an excellent animal model in recognition of adiposity-related processes, corresponding to the size of individual organs, the distribution of body fat in the organism, and similar metabolism. The present study applied the next-generation sequencing method to identify adipose tissue (AT) transcriptomic signals related to increased fat content by identifying differentially expressed genes (DEGs), included long-non coding RNA molecules. The Freiburg RNA tool was applied to recognise predicting hybridisation energy of RNA-RNA interactions. The results indicated several long non-coding RNAs (lncRNAs) whose expression was significantly positively or negatively associated with fat deposition. lncRNAs play an essential role in regulating gene expression by sponging miRNA, binding transcripts, facilitating translation, or coding other smaller RNA regulatory elements. In the pig fat tissue of obese group, increased expression of lncRNAs corresponding to human MALAT1 was observed that previously recognised in the obesity-related context. Moreover, hybridisation energy analyses pinpointed numerous potential interactions between identified differentially expressed lncRNAs, and obesity-related genes and miRNAs expressed in AT.

scholarly journals Effects of Supplemental Cations on Growth and Nitrogen Accumulation in Canna indica L.

2021 ◽  
Vol 20 (4) ◽  
Author(s):  
Manutsawan Manokieng ◽  
◽  
Arunothai Jampeetong ◽  
Keyword(s):  
Plant Growth ◽  
Constructed Wetlands ◽  
Nitrate Removal ◽  
Nitrogen Accumulation ◽  
Total Biomass ◽  
Canna Indica ◽  
Whole Plant ◽  
Stimulate Plant Growth ◽  
Plant Level ◽  
Mineral Accumulation

Abstract The effects of supplemental cations on growth, nitrogen, and mineral accumulation were assessed in Canna indica L. Similar sized 45 days-old plants were grown on a nutrient solution modified from Hoagland and Arnon (1950). The different cations were added to generate 6 treatments (n=4): (i) control (no cation added), (ii) 2.5 mM K+, (iii) 2.5 mM Ca2+, (iv) 75 mM Na+, (v) 1.25 mM K+ + 1.25 mM Ca2+ and (vi) 2.5 mM Ca2+ + 75 mM Na+, respectively. An experiment was carried out in the greenhouse for 49 days. The study found that supplemental K+ and K++ Ca2+ increased plant growth and total biomass. The highest SER was found in plants receiving supplemental K+. In contrast, SERs, leaf areas, and total biomass decreased in Na+ or Na++Ca2+ supplemented plants. The accumulated NO3- concentration (at the whole plant level) was also highest in the plants with supplemental K+ and K++Ca2+. The total nitrogen accumulation was higher in the K+, Ca2+, and K++Ca2+ supplemented plants than in the control plants. The results suggest that supplemental cations particularly K+ can enhance plant growth and nitrogen accumulation in C. indica. Therefore, cation supplementation could be an alternative technique to stimulate plant growth and improve nitrate removal in constructed wetlands. Keywords: Constructed wetland, Nitrate removal, Potassium, Tropical wetland plants

scholarly journals Uncovering Trait Associations Resulting in Maximal Seed Yield in Winter and Spring Oilseed Rape

2021 ◽  
Vol 12 ◽  
Author(s):  
Laura Siles ◽  
Kirsty L. Hassall ◽  
Cristina Sanchis Gritsch ◽  
Peter J. Eastmond ◽  
Smita Kurup
Keyword(s):  
Oilseed Rape ◽  
Seed Yield ◽  
Complex Trait ◽  
Growth Conditions ◽  
Phenotypic Traits ◽  
Oilseed Crop ◽  
Crop Species ◽  
Trade Offs ◽  
Whole Plant ◽  
Plant Level

Seed yield is a complex trait for many crop species including oilseed rape (OSR) (Brassica napus), the second most important oilseed crop worldwide. Studies have focused on the contribution of distinct factors in seed yield such as environmental cues, agronomical practices, growth conditions, or specific phenotypic traits at the whole plant level, such as number of pods in a plant. However, how female reproductive traits contribute to whole plant level traits, and hence to seed yield, has been largely ignored. Here, we describe the combined contribution of 33 phenotypic traits within a B. napus diversity set population and their trade-offs at the whole plant and organ level, along with their interaction with plant level traits. Our results revealed that both Winter OSR (WOSR) and Spring OSR (SOSR); the two more economically important OSR groups in terms of oil production; share a common dominant reproductive strategy for seed yield. In this strategy, the main inflorescence is the principal source of seed yield, producing a good number of ovules, a large number of long pods with a concomitantly high number of seeds per pod. Moreover, we observed that WOSR opted for additional reproductive strategies than SOSR, presenting more plasticity to maximise seed yield. Overall, we conclude that OSR adopts a key strategy to ensure maximal seed yield and propose an ideal ideotype highlighting crucial phenotypic traits that could be potential targets for breeding.

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