scholarly journals The genetic basis of sex determination in grapevines (Vitis spp.)

2019 ◽  
Author(s):  
Mélanie Massonnet ◽  
Noé Cochetel ◽  
Andrea Minio ◽  
Amanda M. Vondras ◽  
Aline Muyle ◽  
...  
Keyword(s):  
Sex Determination ◽  
Single Molecule ◽  
Male Fertility ◽  
Genetic Basis ◽  
Sexual Systems ◽  
Sex Type ◽  
Related Wild Species ◽  
Males And Females ◽  
Vitis Spp ◽  
Sex Locus

AbstractSex determination in grapevine evolved through a complex succession of switches in sexual systems. Phased genomes built with single molecule real-time sequencing reads were assembled for eleven accessions of cultivated hermaphrodite grapevines and dioecious males and females, including the ancestor of domesticated grapevine and other related wild species. By comparing the phased sex haplotypes, we defined the sex locus of the Vitis genus and identified polymorphisms spanning regulatory and coding sequences that are in perfect association with each sex-type throughout the genus. These findings identified a novel male-fertility candidate gene, INP1, and significantly refined the model of sex determination in Vitis and its evolution.

scholarly journals Sex determination in crayfish: are intersex Cherax quadricarinatus (Decapoda, Parastacidae) genetically females?

2003 ◽  
Vol 82 (2) ◽  
pp. 107-116 ◽  
Author(s):  
S. PARNES ◽  
I. KHALAILA ◽  
G. HULATA ◽  
A. SAGI
Keyword(s):  
Sex Ratio ◽  
Sex Determination ◽  
Genetic Basis ◽  
Male And Female ◽  
Cherax Quadricarinatus ◽  
Male Ratio ◽  
Males And Females ◽  
Normal Males ◽  
Red Claw Crayfish ◽  
Female Genital

In the Australian red-claw crayfish Cherax quadricarinatus (von Martens) (Decapoda, Parastacidae), a gonochoristic species, seven different combinations of intersex individuals (with both male and female genital openings) have been described. However, to date, the genetic basis for this phenomenon has not been investigated. This study was designed to test a simple chromosome-based sex-determination model for C. quadricarinatus that assumes the male to be the homogametic (ZZ) sex. According to our model, intersex individuals that are functionally males are genetically females (WZ). Individual crosses were performed between intersex and female crayfish, with control crosses being performed between normal males and females. The control crosses yielded, in most cases, the expected 1[ratio ]1 sex ratio in the F1 progeny. Crosses between intersex individuals and females yielded a 1[ratio ]3 (male[ratio ]female) sex ratio in most crosses. According to our hypothesis, one-third of the females produced in a cross of a female with an intersex animal should be WW females. The hypothesis was tested by crossing normal males with F1 females, which were progeny of intersex fathers. These crosses yielded almost 100% females, a finding that conforms to the above-suggested sex determination model for C. quadricarinatus and the female WZ genotype of intersex individuals.

AVALIAÇÃO DO CONHECIMENTO TRADICIONAL DOS PESCADORES DA RDSM APLICADO À IDENTIFICAÇÃO DO SEXO DE PIRARUCUS

2010 ◽  
Vol 5 (2) ◽  
pp. 59-66
Author(s):  
Kelven Lopes ◽  
Helder Lima de Queiroz
Keyword(s):  
Sex Determination ◽  
Traditional Knowledge ◽  
Structured Interviews ◽  
Sustainable Fisheries ◽  
Arapaima Gigas ◽  
Males And Females

This study examined the traditional knowledge of fishermen at Mamirauá Reserve about sex determination of pirarucus, Arapaima gigas Schinz 1822. We evaluated the criteria used for by fishermen in the sector Jarauá at Mamirauá Reserve for this determination, during the fisheries season, from October to November 2004. We analyzed responses of a group of about 15 fishermen collected in structured interviews regarding 109 individual pirarucus, 65 males and 44 females. From this sample, only 64 fish have their sex correctly predicted by the fishermen. Although the traditional knowledge of local fishermen is a key component of the sustainable fisheries of this species, this knowledge is not functional in all ranges and aspects, as in sex distinction. We found that the local fishermen evaluated are not able to recognize the sex of pirarucus, although some criteria applied for this purpose are consistent with their biology. The rates of correct forecasts for recognition of males and females were similar to those obtained by chance, even when the criteria applied were consistent, as the criterion “coloration”, which was significantly consistent for identification of males. Yet the group of fishermen interviewed in this study apparently did not apply this criterion correctly.

scholarly journals Unusually High Recombination Rate Detected in the Sex Locus Region of the Honey Bee (Apis mellifera)

Genetics ◽  
1999 ◽  
Vol 153 (4) ◽  
pp. 1701-1708 ◽  
Author(s):  
Martin Beye ◽  
Greg J Hunt ◽  
Robert E Page ◽  
M Kim Fondrk ◽  
Lore Grohmann ◽  
...  
Keyword(s):  
Sex Determination ◽  
Physical Mapping ◽  
Recombination Rate ◽  
Heterozygote Advantage ◽  
Range Restriction ◽  
Group Iii ◽  
Single Sex ◽  
Complementary Sex Determination ◽  
Sex Locus ◽  
Map Distance

Abstract Sex determination in Hymenoptera is controlled by haplo-diploidy in which unfertilized eggs develop into fertile haploid males. A single sex determination locus with several complementary alleles was proposed for Hymenoptera [so-called complementary sex determination (CSD)]. Heterozygotes at the sex determination locus are normal, fertile females, whereas diploid zygotes that are homozygous develop into sterile males. This results in a strong heterozygote advantage, and the sex locus exhibits extreme polymorphism maintained by overdominant selection. We characterized the sex-determining region by genetic linkage and physical mapping analyses. Detailed linkage and physical mapping studies showed that the recombination rate is <44 kb/cM in the sex-determining region. Comparing genetic map distance along the linkage group III in three crosses revealed a large marker gap in the sex-determining region, suggesting that the recombination rate is high. We suggest that a “hotspot” for recombination has resulted here because of selection for combining favorable genotypes, and perhaps as a result of selection against deleterious mutations. The mapping data, based on long-range restriction mapping, suggest that the Q DNA-marker is within 20,000 bp of the sex locus, which should accelerate molecular analyses.

scholarly journals Sex-dependent dominance maintains migration supergene in rainbow trout

2018 ◽  
Author(s):  
Devon E. Pearse ◽  
Nicola J. Barson ◽  
Torfinn Nome ◽  
Guangtu Gao ◽  
Matthew A. Campbell ◽  
...  
Keyword(s):  
Rainbow Trout ◽  
Sex Chromosomes ◽  
Sexual Conflict ◽  
Genetic Basis ◽  
Deleterious Mutation ◽  
Deleterious Mutations ◽  
Heteromorphic Sex Chromosomes ◽  
Males And Females ◽  
Shared Genetic ◽  
Environmental Dependence

AbstractTraits with different fitness optima in males and females cause sexual conflict when they have a shared genetic basis. Heteromorphic sex chromosomes can resolve this conflict and protect sexually antagonistic polymorphisms but accumulate deleterious mutations. However, many taxa lack differentiated sex chromosomes, and how sexual conflict is resolved in these species is largely unknown. Here we present a chromosome-anchored genome assembly for rainbow trout (Oncorhynchus mykiss) and characterize a 56 Mb double-inversion supergene that mediates sex-specific migration through sex-dependent dominance, a mechanism that reduces sexual conflict. The double-inversion contains key photosensory, circadian rhythm, adiposity, and sexual differentiation genes and displays frequency clines associated with latitude and temperature, revealing environmental dependence. Our results constitute the first example of sex-dependent dominance across a large autosomal supergene, a novel mechanism for sexual conflict resolution capable of protecting polygenic sexually antagonistic variation while avoiding the homozygous lethality and deleterious mutation load of heteromorphic sex chromosomes.

scholarly journals Analysis of the sex ratio in Bradysia matogrossensis (Diptera, Sciaridae)

2000 ◽  
Vol 23 (1) ◽  
pp. 97-103 ◽  
Author(s):  
Lincoln S. Rocha ◽  
André Luiz P. Perondini
Keyword(s):  
Sex Ratio ◽  
Sex Determination ◽  
X Chromosome ◽  
Control Mechanism ◽  
Sex Ratios ◽  
Laboratory Strain ◽  
Chromosome Elimination ◽  
Common Control ◽  
Males And Females ◽  
Successive Generations

In sciarid flies, the control of sex determination and of the progeny sex ratio is exercised by the parental females, and is based on differential X-chromosome elimination in the initial stages of embryogenesis. In some species, the females produce unisexual progenies (monogenic females) while in others, the progenies consist of males and females (digenic females). The sex ratio of bisexual progenies is variable, and departs considerably from 1:1. Bradysia matogrossensis shows both monogenic and digenic reproduction. In a recently established laboratory strain of this species, 15% of the females were digenic, 10% produced only females, 13% produced only males, and 62% produced progenies with one predominant sex (33% predominantly of female and 29% predominantly male progenies). These progeny sex ratios were maintained in successive generations. Females from female-skewed progenies yielded female- and male-producing daughters in a 1:1 ratio. In contrast, daughters of females from male-skewed progenies produce bisexual or male-skewed progenies. The X-chromosome of B. matogrossensis shows no inversion or other gross aberration. These results suggest that the control of the progeny sex ratio (or differential X-chromosome elimination) involves more than one locus or, at least, more than one pair of alleles. The data also suggest that, in sciarid flies, monogeny and digeny may share a common control mechanism.

scholarly journals A compendium of novel genomics technologies provides a chromosome-scale assembly and insights into the sex determining system of the Greenland Halibut

2021 ◽  
Author(s):  
Anne-Laure Ferchaud ◽  
Claire Merot ◽  
Eric Normandeau ◽  
Ioannis Ragoussis ◽  
Charles Babin ◽  
...  
Keyword(s):  
Sex Determination ◽  
Single Molecule ◽  
Sex Chromosome ◽  
Major Effect ◽  
Whole Genome Sequence ◽  
Greenland Halibut ◽  
Long Reads ◽  
Full Picture ◽  
High Conservation ◽  
High Level

Despite the commercial importance of Greenland Halibut (Reinhardtius hippoglossoides), important gaps still persist in our knowledge of this species, including its reproductive biology and sex determination mechanism. In this study, we combined single molecule sequencing of long reads (Pacific Sciences) with Chromatin Conformation Capture sequencing (Hi-C) data to provide the first chromosome-level genome reference for this species. The high-quality assembly encompassed more than 598 Megabases (Mb) assigned to 1 594 scaffolds (scaffold N50 = 25 Mb) with 96 % of its total length distributed among 24 chromosomes. The investigation of its syntenic relationships with other economically important flatfish species revealed a high conservation of synteny blocks among members of this phylogenetic clade. Sex determination analysis revealed that flatfishes do not escape the rule applied to other teleost fish and exhibit a high level of plasticity and turnover in sex-determination mechanisms. A whole-genome sequence analysis of 198 individuals allowed us to draw a full picture of the molecular sex determination (SD) system for Greenland Halibut, revealing that this species possesses a very nascent male heterogametic XY system, with a putative major effect of the sox2 gene, also described as the main SD driver in two other flatfishes. Interestingly, our study also suggested for the first time in flatfishes that a putative Y-autosomal fusion could be associated with a reduction of recombination typical of early steps of sex chromosome evolution.

scholarly journals Chromosome-level assembly reveals a putative Y-autosomal fusion in the sex determination system of the Greenland Halibut (Reinhardtius hippoglossoides)

2021 ◽  
Author(s):  
Anne-Laure Ferchaud ◽  
Claire Mérot ◽  
Eric Normandeau ◽  
Jiannis Ragoussis ◽  
Charles Babin ◽  
...  
Keyword(s):  
Sex Determination ◽  
Single Molecule ◽  
Sex Chromosome ◽  
Whole Genome Sequence ◽  
Greenland Halibut ◽  
Syntenic Relationship ◽  
Greenland Halibut Reinhardtius Hippoglossoides ◽  
Reinhardtius Hippoglossoides ◽  
Sex Determination System ◽  
Chromosome Level

Abstract Despite the commercial importance of Greenland Halibut (Reinhardtius hippoglossoides), important gaps still persist in our knowledge of this species, including its reproductive biology and sex determination mechanism. Here, we combined single-molecule sequencing of long reads (Pacific Sciences) with chromatin conformation capture sequencing (Hi-C) data to assemble the first chromosome-level reference genome for this species. The high-quality assembly encompassed more than 598 Megabases (Mb) assigned to 1 594 scaffolds (scaffold N50 = 25 Mb) with 96% of its total length distributed among 24 chromosomes. Investigation of the syntenic relationship with other economically important flatfish species revealed a high conservation of synteny blocks among members of this phylogenetic clade. Sex determination analysis revealed that, similar to other teleost fishes, flatfishes also exhibit a high level of plasticity and turnover in sex-determination mechanisms. A low-coverage whole-genome sequence analysis of 198 individuals revealed that Greenland Halibut possesses a male heterogametic XY system and several putative candidate genes implied in the sex determination of this species. Our study also suggests for the first time in flatfishes that a putative Y-autosomal fusion could be associated with a reduction of recombination typical of the early steps of sex chromosome evolution.

Learners’ Knowledge of Local History and Culture

2021 ◽  
Vol 1 (1) ◽  
pp. 57-62
Author(s):  
Charle F. Ysulan
Keyword(s):  
Public Schools ◽  
Family Income ◽  
Local History ◽  
School Year ◽  
The Social ◽  
Sex Type ◽  
Males And Females ◽  
Spss Software ◽  
Type Of School ◽  
One Way Anova

This descriptive study determined the learners' knowledge of local history and culture. The participants were Grade 10 students enrolled for the school year 2018-2019, categorized according to sex, type of school, and family income. The data were tabulated and analyzed using SPSS (Software Package for the Social Sciences Software) with Frequency, Mean, Standard Deviation, t-Test, and One-way ANOVA. The findings demonstrated that when learners were categorized by sex, type of school, and family income, their knowledge of local history was partly knowledgeable. When taken as a whole, the learners' knowledge of local culture was also partly knowledgeable. Both males and females were partly knowledgeable when it came to sex. In terms of the type of school, public schools were knowledgeable, whereas private schools were only partly knowledgeable. Finally, when it came to family income, learners with low and average family income were partly knowledgeable, whereas learners with high family income were knowledgeable. With this study, learners' knowledge gained knowledge of local history and culture.

Linkage Analysis of Sex Determination in Bracon sp. Near hebetor (Hymenoptera: Braconidae)

Genetics ◽  
2000 ◽  
Vol 154 (1) ◽  
pp. 205-212
Author(s):  
Alisha K Holloway ◽  
Michael R Strand ◽  
William C Black ◽  
Michael F Antolin
Keyword(s):  
Linkage Group ◽  
Sex Determination ◽  
Rapd Markers ◽  
Random Amplified Polymorphic Dna ◽  
Parasitic Wasp ◽  
Specific Pattern ◽  
Diploid Males ◽  
Phenotypic Marker ◽  
Group I ◽  
Sex Locus

Abstract To test whether sex determination in the parasitic wasp Bracon sp. near hebetor (Hymenoptera: Braconidae) is based upon a single locus or multiple loci, a linkage map was constructed using random amplified polymorphic DNA (RAPD) markers. The map includes 71 RAPD markers and one phenotypic marker, blonde. Sex was scored in a manner consistent with segregation of a single “sex locus” under complementary sex determination (CSD), which is common in haplodiploid Hymenoptera. Under haplodiploidy, males arise from unfertilized haploid eggs and females develop from fertilized diploid eggs. With CSD, females are heterozygous at the sex locus; diploids that are homozygous at the sex locus become diploid males, which are usually inviable or sterile. Ten linkage groups were formed at a minimum LOD of 3.0, with one small linkage group that included the sex locus. To locate other putative quantitative trait loci (QTL) for sex determination, sex was also treated as a binary threshold character. Several QTL were found after conducting permutation tests on the data, including one on linkage group I that corresponds to the major sex locus. One other QTL of smaller effect had a segregation pattern opposite to that expected under CSD, while another putative QTL showed a female-specific pattern consistent with either a sex-differentiating gene or a sex-specific deleterious mutation. Comparisons are made between this study and the indepth studies on sex determination and sex differentiation in the closely related B. hebetor.

scholarly journals A molecular genetic approach for sex determination on helmeted hornbill (Rhinoplax vigil) casque: a forensic casework

2020 ◽  
Vol 19 ◽  
pp. 00020
Author(s):  
Yuli S. Fitriana ◽  
Mohammad Irham ◽  
Hari Sutrisno ◽  
Abinawanto
Keyword(s):  
Sex Determination ◽  
Molecular Genetic ◽  
Independent Sets ◽  
Black Market ◽  
Critically Endangered ◽  
Genetic Approach ◽  
Genetic Sexing ◽  
Male And Female ◽  
Forensic Casework ◽  
Males And Females

Helmeted Hornbill (Rhinolax vigil) is the only hornbill that equipped with solid casque made from keratin for both males and females. The demand for casque in the black market was huge and resulted in IUCN status leaped up from vulnerable to critically endangered. We received a total of 68 confiscated helmeted hornbill casques. As part of the casework and the objectives of the study, we determined to reveal the sex status of those casques and the best methods to work with keratinous material. Molecular methods to determining sex in birds rely on the CHD gene located on male and female chromosomes ZZ and ZW, respectively. We optimized laboratory protocols for genetic sexing using three independent sets of primers P2/P8, 2550F/2718R, and CHD1F/CHD1R to amplify regions of the sexlinked CHD-Z and CHD-W genes. The CHD1F/CHD1R determined sex 80.88% of samples. The 2550F/2718R were quite successful, sexing 51.47% of samples. In contrast, the P2/P8 only identified the sex around 20.58% of samples. These results showed that CHD1F/CHD1R works the most effective for sexing the casques with 52.9% females, 27.9% males, and 19.1% unidentified. Therefore, the most accurate and suitable primers are CHD1F/CHD1R, 2550F/2718R, and P2/P8, respectively for keratinous samples.

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