scholarly journals A convolutional neural network for the quality control of MRI defacing

2021 ◽  
Author(s):  
Daniel J Delbarre ◽  
Luis Santos ◽  
Habib Ganjgahi ◽  
Neil Horner ◽  
Aaron McCoy ◽  
...  
Keyword(s):  
Neural Network ◽  
Quality Control ◽  
Convolutional Neural Network ◽  
Large Scale ◽  
Test Accuracy ◽  
The Face ◽  
Mri Scans ◽  
Automated Processing ◽  
Magnetic Resonance Imaging Mri ◽  
Efficient Verification

Large scale neuroimaging datasets present unique challenges for automated processing pipelines. Motivated by a large-scale clinical trials dataset of Multiple Sclerosis (MS) with over 235,000 magnetic resonance imaging (MRI) scans, we consider the challenge of defacing - anonymisation to remove identifying features on the face and the ears. The defacing process must undergo quality control (QC) checks to ensure that the facial features have been adequately anonymised and that the brain tissue is left completely intact. Visual QC checks - particularly on a project of this scale - are time-consuming and can cause delays in preparing data for research. In this study, we have developed a convolutional neural network (CNN) that can assist with the QC of MRI defacing. Our CNN is able to distinguish between scans that are correctly defaced, and three sub-types of failures with high test accuracy (77\%). Through applying visualisation techniques, we are able to verify that the CNN uses the same anatomical features as human scorers when selecting classifications. Due to the sensitive nature of the data, strict thresholds are applied so that only classifications with high confidence are accepted, and scans that are passed by the CNN undergo a time-efficient verification check. Integration of the network into the anonymisation pipeline has led to nearly half of all scans being classified by the CNN, resulting in a considerable reduction in the amount of time needed for manual QC checks, while maintaining high QC standards to protect patient identities.

scholarly journals Detection of Parkinson’s Disease from 3T T1 Weighted MRI Scans Using 3D Convolutional Neural Network

Diagnostics ◽  
2020 ◽  
Vol 10 (6) ◽  
pp. 402
Author(s):  
Sabyasachi Chakraborty ◽  
Satyabrata Aich ◽  
Hee-Cheol Kim
Keyword(s):  
Neural Network ◽  
Parkinson’S Disease ◽  
Parkinson's Disease ◽  
Convolutional Neural Network ◽  
Dopaminergic Neurons ◽  
Aging Population ◽  
Substantia Nigra Pars Compacta ◽  
Progressive Loss ◽  
Mri Scans ◽  
Magnetic Resonance Imaging Mri

Parkinson’s Disease is a neurodegenerative disease that affects the aging population and is caused by a progressive loss of dopaminergic neurons in the substantia nigra pars compacta (SNc). With the onset of the disease, the patients suffer from mobility disorders such as tremors, bradykinesia, impairment of posture and balance, etc., and it progressively worsens in the due course of time. Additionally, as there is an exponential growth of the aging population in the world the number of people suffering from Parkinson’s Disease is increasing and it levies a huge economic burden on governments. However, until now no therapeutic method has been discovered for completely eradicating the disease from a person’s body after it’s onset. Therefore, the early detection of Parkinson’s Disease is of paramount importance to tackle the progressive loss of dopaminergic neurons in patients to serve them with a better life. In this study, 3T T1-weighted MRI scans were acquired from the Parkinson’s Progression Markers Initiative (PPMI) database of 406 subjects from baseline visit, where 203 were healthy and 203 were suffering from Parkinson’s Disease. Following data pre-processing, a 3D convolutional neural network (CNN) architecture was developed for learning the intricate patterns in the Magnetic Resonance Imaging (MRI) scans for the detection of Parkinson’s Disease. In the end, it was observed that the developed 3D CNN model performed superiorly by completely aligning with the hypothesis of the study and plotted an overall accuracy of 95.29%, average recall of 0.943, average precision of 0.927, average specificity of 0.9430, f1-score of 0.936, and Receiver Operating Characteristic—Area Under Curve (ROC-AUC) score of 0.98 for both the classes respectively.

scholarly journals Automated System for Grading Apples using Convolutional Neural Network

2019 ◽  
Vol 9 (1) ◽  
pp. 1458-1464
Keyword(s):  
Neural Network ◽  
Quality Control ◽  
Convolutional Neural Network ◽  
Recognition Rate ◽  
Automated System ◽  
Test Accuracy ◽  
Fruit Processing ◽  
Fruit Grading ◽  
Increasing Demand

Fruit grading is a process that affect quality control and fruit-processing industries to meet the efficiency of its production and society. However, these industries have suffered from lack of standards in quality control, higher time of grading and low product output because of the use of manual methods. To meet the increasing demand of quality fruit products, fruit-processing industries must consider automating their fruit grading process. Several algorithms have been proposed over the years to achieve this purpose and their works were based on color, shape and inability to handle large dataset which resulted in slow recognition accuracy. To mitigate these flaws, we develop an automated system for grading and classification of apple using Convolutional Neural Network (CNN) used in image recognition and classification. Two models were developed from CNN using ResNet50 as its convolutional base, a process called transfer learning. The first model, the apple checker model (ACM) performs the recognition of the image with two output connections (apple and non-apple) while the apple grader model (AGM) does the classification of the image that has four output classes (spoiled, grade A, grade B & grade C) if the image is an apple. A comparison evaluation of both models were conducted and experimental results show that the ACM achieved a test accuracy of 100% while the AGM obtained recognition rate of 99.89%.The developed system may be employed in food processing industries and related life applications.

scholarly journals Testing a convolutional neural network-based hippocampal segmentation method in a stroke population

2020 ◽  
Author(s):  
Artemis Zavaliangos-Petropulu ◽  
Meral A. Tubi ◽  
Elizabeth Haddad ◽  
Alyssa Zhu ◽  
Meredith N. Braskie ◽  
...  
Keyword(s):  
Neural Network ◽  
Quality Control ◽  
Convolutional Neural Network ◽  
Large Scale ◽  
Hippocampal Volume ◽  
Segmentation Method ◽  
Post Stroke ◽  
Stroke Population ◽  
Segmentation Methods

AbstractAs stroke mortality rates decrease, there has been a surge of effort to study post-stroke dementia (PSD) to improve long-term quality of life for stroke survivors. Hippocampal volume may be an important neuroimaging biomarker in post-stroke dementia, as it has been associated with many other forms of dementia. However, studying hippocampal volume using MRI requires hippocampal segmentation. Advances in automated segmentation methods have allowed for studying the hippocampus on a large scale, which is important for robust results in the heterogeneous stroke population. However, most of these automated methods use a single atlas-based approach and may fail in the presence of severe structural abnormalities common in stroke. Hippodeep, a new convolutional neural network-based hippocampal segmentation method, does not rely solely on a single atlas-based approach and thus may be better suited for stroke populations. Here, we compared quality control and the accuracy of segmentations generated by Hippodeep and two well-accepted hippocampal segmentation methods on stroke MRIs (FreeSurfer 6.0 whole hippocampus and FreeSurfer 6.0 sum of hippocampal subfields). Quality control was performed using a stringent protocol for visual inspection of the segmentations, and accuracy was measured as volumetric and spatial comparisons to the manual segmentations. Hippodeep performed significantly better than both FreeSurfer methods in terms of quality control and spatial accuracy. Overall, this study suggests that both Hippodeep and FreeSurfer may be useful for hippocampal segmentation in stroke rehabilitation research, but Hippodeep may be more robust to stroke lesion anatomy.

scholarly journals Test Accuracy Improvement in Face Recognition Using Convolutional Neural Networks

2019 ◽  
Vol 8 (2S11) ◽  
pp. 2447-2451
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Face Recognition ◽  
Facial Expression ◽  
Convolutional Neural Network ◽  
Scale Invariance ◽  
Local Binary Pattern ◽  
Test Accuracy ◽  
Accuracy Improvement ◽  
The Face

Now-a-days face recognition plays a major role in identifying face of the specific person. There are different face recognition algorithms such as Eigenfaces algorithm, Local binary pattern histograms, Fisherfaces algorithm. All these algorithms face the problem of subject independence as well as translation, rotation, and scale invariance in the recognition of facial expression. In this study, the face recognition using neural network and convolutional neural network (CNN) techniques were utilized and implemented with the help of Python software 3.6.6. It is noticed that the test accuracy is improved against translation, rotation, and scale invariance in face recognition using CNN.

scholarly journals Incorporating the Laplacian Filter with a Three-Stream Multi-Channel Convolutional Neural Network for Improved Abnormality Detection in Knee MRIs

2021 ◽  
Author(s):  
Rahul Kumar ◽  
Rohan Bhansali
Keyword(s):  
Neural Network ◽  
Convolutional Neural Network ◽  
Laplace Operator ◽  
Performance Metrics ◽  
Mri Scan ◽  
Meniscus Tears ◽  
Mri Scans ◽  
Laplacian Filter ◽  
Magnetic Resonance Imaging Mri ◽  
The Laplace Operator

AbstractDespite ACL and meniscus tears being among the most common movement induced injuries, they are often the most difficult to diagnose due to the variable severity with which these tears occur. Typically, magnetic resonance imaging (MRI) scans are used for diagnosing ligament tears, but performing and analyzing these scans is time consuming and expensive due to the necessitation of a radiologist or professional orthopedic specialist. Consequently, we developed a custom three-stream convolutional neural network (CNN) architecture that contains multiple channels to automate the diagnosis of ACL and meniscus tears from MRI scans. Our algorithm utilizes the sagittal, coronal, and axial slices to maximize feature extraction. Furthermore, we apply the Laplace Operator on the MRI scan images to evaluate and compare its propensity in different medical imaging modalities. The algorithm attained an accuracy of 92.80%, significantly higher than that of orthopedic diagnosis accuracy. Our results point towards the feasibility of shallow, multi-channel CNNs and the ability of the Laplace Operator to improve performance metrics for MRI scan diagnosis.

scholarly journals Face recognition based on full convolutional neural network based on transfer learning model

2021 ◽  
pp. 28-28
Author(s):  
Zhongkui Fan ◽  
Ye-Peng Guan
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Face Recognition ◽  
Convolutional Neural Network ◽  
Transfer Learning ◽  
Test Accuracy ◽  
Great Success ◽  
Data Set ◽  
Face Features ◽  
The Face

Deep learning has achieved a great success in face recognition (FR), however, little work has been done to apply deep learning for face photo-sketch recognition. This paper proposes an adaptive scale local binary pattern extraction method for optical face features. The extracted features are classified by Gaussian process. The most authoritative optical face test set LFW is used to train the trained model. Test, the test accuracy is 98.7%. Finally, the face features extracted by this method and the face features extracted from the convolutional neural network method are adapted to sketch faces through transfer learning, and the results of the adaptation are compared and analyzed. Finally, the paper tested the open-source sketch face data set CUHK Face Sketch database(CUFS) using the multimedia experiment of the Chinese University of Hong Kong. The test result was 97.4%. The result was compared with the test results of traditional sketch face recognition methods. It was found that the method recognized High efficiency, it is worth promoting.

Non-Blind Image Deconvolution Based on “Ringing” Removal Using Convolutional Neural Network

2020 ◽  
Vol 2020 (10) ◽  
pp. 181-1-181-7
Author(s):  
Takahiro Kudo ◽  
Takanori Fujisawa ◽  
Takuro Yamaguchi ◽  
Masaaki Ikehara
Keyword(s):  
Neural Network ◽  
Convolutional Neural Network ◽  
Network Architecture ◽  
Large Scale ◽  
Blind Deconvolution ◽  
Training Dataset ◽  
Image Deconvolution ◽  
Classic Problem ◽  
Key Points ◽  
Blind Image

Image deconvolution has been an important issue recently. It has two kinds of approaches: non-blind and blind. Non-blind deconvolution is a classic problem of image deblurring, which assumes that the PSF is known and does not change universally in space. Recently, Convolutional Neural Network (CNN) has been used for non-blind deconvolution. Though CNNs can deal with complex changes for unknown images, some CNN-based conventional methods can only handle small PSFs and does not consider the use of large PSFs in the real world. In this paper we propose a non-blind deconvolution framework based on a CNN that can remove large scale ringing in a deblurred image. Our method has three key points. The first is that our network architecture is able to preserve both large and small features in the image. The second is that the training dataset is created to preserve the details. The third is that we extend the images to minimize the effects of large ringing on the image borders. In our experiments, we used three kinds of large PSFs and were able to observe high-precision results from our method both quantitatively and qualitatively.

scholarly journals Classification of Skin Disease Using Deep Learning Neural Networks with MobileNet V2 and LSTM

Sensors ◽  
2021 ◽  
Vol 21 (8) ◽  
pp. 2852
Author(s):  
Parvathaneni Naga Srinivasu ◽  
Jalluri Gnana SivaSai ◽  
Muhammad Fazal Ijaz ◽  
Akash Kumar Bhoi ◽  
Wonjoon Kim ◽  
...  
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Skin Disease ◽  
Network Architecture ◽  
Large Scale ◽  
Short Term Memory ◽  
Convolutional Networks ◽  
Occurrence Matrix

Deep learning models are efficient in learning the features that assist in understanding complex patterns precisely. This study proposed a computerized process of classifying skin disease through deep learning based MobileNet V2 and Long Short Term Memory (LSTM). The MobileNet V2 model proved to be efficient with a better accuracy that can work on lightweight computational devices. The proposed model is efficient in maintaining stateful information for precise predictions. A grey-level co-occurrence matrix is used for assessing the progress of diseased growth. The performance has been compared against other state-of-the-art models such as Fine-Tuned Neural Networks (FTNN), Convolutional Neural Network (CNN), Very Deep Convolutional Networks for Large-Scale Image Recognition developed by Visual Geometry Group (VGG), and convolutional neural network architecture that expanded with few changes. The HAM10000 dataset is used and the proposed method has outperformed other methods with more than 85% accuracy. Its robustness in recognizing the affected region much faster with almost 2× lesser computations than the conventional MobileNet model results in minimal computational efforts. Furthermore, a mobile application is designed for instant and proper action. It helps the patient and dermatologists identify the type of disease from the affected region’s image at the initial stage of the skin disease. These findings suggest that the proposed system can help general practitioners efficiently and effectively diagnose skin conditions, thereby reducing further complications and morbidity.

scholarly journals Programmable phase-change metasurfaces on waveguides for multimode photonic convolutional neural network

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Changming Wu ◽  
Heshan Yu ◽  
Seokhyeong Lee ◽  
Ruoming Peng ◽  
Ichiro Takeuchi ◽  
...  
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Phase Change ◽  
Convolutional Neural Network ◽  
Large Scale ◽  
Phase Change Materials ◽  
Refractive Index Change ◽  
Optical Computing ◽  
Machine Learning Algorithms ◽  
Matrix Vector Multiplication

AbstractNeuromorphic photonics has recently emerged as a promising hardware accelerator, with significant potential speed and energy advantages over digital electronics for machine learning algorithms, such as neural networks of various types. Integrated photonic networks are particularly powerful in performing analog computing of matrix-vector multiplication (MVM) as they afford unparalleled speed and bandwidth density for data transmission. Incorporating nonvolatile phase-change materials in integrated photonic devices enables indispensable programming and in-memory computing capabilities for on-chip optical computing. Here, we demonstrate a multimode photonic computing core consisting of an array of programable mode converters based on on-waveguide metasurfaces made of phase-change materials. The programmable converters utilize the refractive index change of the phase-change material Ge2Sb2Te5 during phase transition to control the waveguide spatial modes with a very high precision of up to 64 levels in modal contrast. This contrast is used to represent the matrix elements, with 6-bit resolution and both positive and negative values, to perform MVM computation in neural network algorithms. We demonstrate a prototypical optical convolutional neural network that can perform image processing and recognition tasks with high accuracy. With a broad operation bandwidth and a compact device footprint, the demonstrated multimode photonic core is promising toward large-scale photonic neural networks with ultrahigh computation throughputs.

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